Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004831

Physical Location & Seq

Genomic Coordinates Forward (+)

1543304 .. 1544893

Gene Structure 1590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015805

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCGTGGGACTTGTTCCAATGTCGATGATTTCTCTCAAGAACAACCATCTGAGCAGCCAATAATATGTGAGCGTTCCAATGAGGAAAATTGTGAATGTAGTAGAGGGATGAGTTCTGCTGCACATTTTATAAAACACCTTCCGGGTGAAAGTCAAGGGCCTCAGCTGAATAATGCCGGTATTGGATTGCTTGCCAATTTTGAATCCGAGTGTCAATGGCCATCTTTTACCTCATCCTGTGAGTATTTTTTATTTATTTTTAAGTGTACTTCATCAATGGTCAATCATAACTCGTCGCGAAGACTAATGGTTCGAAGGAACTCGCATCCTAATTCAGAAGCCACAGTAAGAGGCCTAACAAGTTATATTGCTAACACTCCGAATCTTATTAACAATGGAAATTGCACCACATTGCTTTTCGGATCCACTCTTTCTCAAGGTCTTTTTGGGGTGCCTTCAAATCTTTTCCGGTCTGTAATGCCTGCCATTCAGCTTCCCCACACAAGCGGAGATTCAATGTCTCAAATGGAAGACGCTCCTGCTACTTTTGATGATAGTGGATTCCCTAGTGAGGACCAAATAATTGATATATGGAGGCAACTTCTCATGGAATCGACTCTATATATACACAGGGCGGCTGATAACTTGCTAGAAGGTTCAAGTTCCGTCTTTAGGGTAACGGCTGACAATGGATCAGTGGACTTCAGACTTAACGTTGAAGTTGTTAACCAATCACTAGTGTACTTTTCAATTGAAATGCGCAATCGCTTTGGAGGGATGAGGCTTGATGTGGATAACATGTCATATGAGGAGCTATTGGCTTTAGAAGATCATATAGGGTATGTCAGCACAGGGTTATCCGAGGAAGCAGCCGTTGCATCTCTCAAACGCAGTAGTTATATTCTGCTTGCTGATGAAAATGCTCCGAAAGAGTTTTGCAGCATCTGCCAGGTACTCGGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

322

Amino Acids

35.51

Weight (kDa)

4.7

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01850
malus_domestica	MD02G1016500.v1.1 MD15G1161000.v1.1
prunus_persica	Prupe.7G256200_v2.0.a1
pyrus_communis	pycom02g01460
rosa_chinensis	RchiOBHm_Chr2g0086821
rosa_laevigata	RLG00000015799 RLG00000015800 RLG00000015805 RLG00000015806
rosa_multiflora	Rmu_sc0010698.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154110 Rroxscaffold_2G00154130
rosa_rugosa	Rorug01G0469800 Rorug01G0469900 Rorug01G0470000 Rorug07G0271000
rosa_samantha	Rh2AG022600 Rh2AG024500 Rh2AG024600 Rh2AG024800 Rh2BG022800 Rh2BG023100 Rh2CG023500 Rh2CG023600 Rh2CG025100 Rh2DG023000 Rh2DG025000 Rh2DG025100
rosa_wichuraiana	Rw2G001790 Rw2G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
Acc16I	TGCGCA	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	451
AccII	CGCG	1 cut(s)	298
AciI	CCGC	2 cut(s)	507, 635
AclI	AACGTT	1 cut(s)	714
AclWI	GGATC	3 cut(s)	417, 430, 700
AcoI	YGGCCR	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	688
AfaI	GTAC	3 cut(s)	268, 743, 954
AfiI	CCNNNNNNNGG	2 cut(s)	571, 672
AflIII	ACRYGT	1 cut(s)	798
AgsI	TTSAA	7 cut(s)	203, 459, 516, 660, 719, 750, 755
AhlI	ACTAGT	1 cut(s)	736
AjnI	CCWGG	1 cut(s)	948
AluBI	AGCT	3 cut(s)	166, 493, 814
AluI	AGCT	3 cut(s)	166, 493, 814
Alw26I	GTCTC	1 cut(s)	525
AlwI	GGATC	3 cut(s)	417, 430, 700
AlwNI	CAGNNNCTG	1 cut(s)	945
AoxI	GGCC	3 cut(s)	158, 218, 352
ApeKI	GCWGC	4 cut(s)	55, 119, 869, 939
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AspLEI	GCGC	1 cut(s)	762
AspS9I	GGNCC	2 cut(s)	158, 574
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	158
AsuII	TTCGAA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	574
BalI	TGGCCA	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	451
BbsI	GAAGAC	2 cut(s)	307, 537
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	4 cut(s)	67, 106, 881, 951
BccI	CCATC	2 cut(s)	55, 229
BceAI	ACGGC	2 cut(s)	696, 857
BciT130I	CCWGG	1 cut(s)	950
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	525
BcuI	ACTAGT	1 cut(s)	736
BfaI	CTAG	3 cut(s)	567, 650, 737
BisI	GCNGC	5 cut(s)	56, 120, 636, 870, 940
BlsI	GCNGC	5 cut(s)	57, 121, 637, 871, 941
Bme1390I	CCNGG	2 cut(s)	144, 950
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	2 cut(s)	158, 574
BmiI	GGNNCC	2 cut(s)	424, 453
BmrFI	CCNGG	2 cut(s)	144, 950
BmsI	GCATC	3 cut(s)	334, 887, 951
BpiI	GAAGAC	2 cut(s)	307, 537
Bpu10I	CCTNAGC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	313
BpuEI	CTTGAG	2 cut(s)	21, 420
BpuMI	CCSGG	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	861
BsaWI	WCCGGW	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 672
Bse118I	RCCGGY	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	950
BseDI	CCNNGG	1 cut(s)	861
BseGI	GGATG	4 cut(s)	114, 233, 325, 783
BseLI	CCNNNNNNNGG	2 cut(s)	571, 672
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	2 cut(s)	42, 176
BseRI	GAGGAG	1 cut(s)	824
BseXI	GCAGC	4 cut(s)	67, 106, 881, 951
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	3 cut(s)	160, 220, 354
BshNI	GGYRCC	1 cut(s)	451
BsiSI	CCGG	3 cut(s)	143, 177, 469
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	571, 672
BsmAI	GTCTC	1 cut(s)	525
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	160, 220, 354
Bsp119I	TTCGAA	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	422, 692, 829
Bsp68I	TCGCGA	1 cut(s)	298
BspACI	CCGC	2 cut(s)	507, 635
BspANI	GGCC	3 cut(s)	160, 220, 354
BspCNI	CTCAG	2 cut(s)	43, 175
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	424, 453
BspPI	GGATC	3 cut(s)	417, 430, 700
BspT104I	TTCGAA	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	861
BssMI	GATC	3 cut(s)	422, 692, 829
Bst2UI	CCWGG	1 cut(s)	950
Bst4CI	ACNGT	1 cut(s)	346
BstAPI	GCANNNNNTGC	2 cut(s)	875, 945
BstBI	TTCGAA	1 cut(s)	313
BstC8I	GCNNGC	3 cut(s)	192, 483, 909
BstDEI	CTNAG	2 cut(s)	51, 162
BstF5I	GGATG	4 cut(s)	114, 233, 325, 783
BstFNI	CGCG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	762
BstKTI	GATC	3 cut(s)	425, 695, 832
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	3 cut(s)	422, 692, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	875, 945
BstNI	CCWGG	1 cut(s)	950
BstNSI	RCATGY	1 cut(s)	802
BstSCI	CCNGG	2 cut(s)	142, 948
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	4 cut(s)	67, 106, 881, 951
BstV2I	GAAGAC	2 cut(s)	307, 537
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	3 cut(s)	160, 220, 354
BtsCI	GGATG	4 cut(s)	114, 233, 325, 783
BtsIMutI	CAGTG	1 cut(s)	702
BtuMI	TCGCGA	1 cut(s)	298
Cac8I	GCNNGC	3 cut(s)	192, 483, 909
CaiI	CAGNNNCTG	1 cut(s)	945
CfoI	GCGC	1 cut(s)	762
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	158, 574
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	3 cut(s)	267, 742, 953
CviAII	CATG	2 cut(s)	607, 799
CviQI	GTAC	3 cut(s)	267, 742, 953
DdeI	CTNAG	2 cut(s)	51, 162
DpnI	GATC	3 cut(s)	424, 694, 831
DpnII	GATC	3 cut(s)	422, 692, 829
EaeI	YGGCCR	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	1 cut(s)	688
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	948
FaeI	CATG	2 cut(s)	610, 802
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	606, 798
FauNDI	CATATG	1 cut(s)	805
Fnu4HI	GCNGC	5 cut(s)	56, 120, 636, 870, 940
FokI	GGATG	4 cut(s)	121, 220, 312, 790
Fsp4HI	GCNGC	5 cut(s)	56, 120, 636, 870, 940
FspBI	CTAG	3 cut(s)	567, 650, 737
FspI	TGCGCA	1 cut(s)	761
GlaI	GCGC	1 cut(s)	761
GluI	GCNGC	5 cut(s)	56, 120, 636, 870, 940
HaeIII	GGCC	3 cut(s)	160, 220, 354
HapII	CCGG	3 cut(s)	143, 177, 469
HgaI	GACGC	1 cut(s)	542
HhaI	GCGC	1 cut(s)	762
Hin1II	CATG	2 cut(s)	610, 802
Hin6I	GCGC	1 cut(s)	760
HinP1I	GCGC	1 cut(s)	760
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	6 cut(s)	203, 382, 512, 561, 611, 616
HpaI	GTTAAC	1 cut(s)	727
HpaII	CCGG	3 cut(s)	143, 177, 469
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	4 cut(s)	267, 700, 727, 742
Hpy188I	TCNGA	8 cut(s)	52, 208, 337, 381, 422, 707, 862, 927
Hpy188III	TCNNGA	2 cut(s)	38, 297
Hpy8I	GTNNAC	4 cut(s)	267, 700, 727, 742
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	4 cut(s)	149, 309, 465, 647
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	4 cut(s)	122, 405, 878, 939
HpyF10VI	GCNNNNNNNGC	2 cut(s)	875, 945
HpyF3I	CTNAG	2 cut(s)	51, 162
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	2 cut(s)	610, 802
HspAI	GCGC	1 cut(s)	760
KspAI	GTTAAC	1 cut(s)	727
Kzo9I	GATC	3 cut(s)	422, 692, 829
LmnI	GCTCC	3 cut(s)	541, 811, 928
Lsp1109I	GCAGC	4 cut(s)	67, 106, 881, 951
LweI	GCATC	3 cut(s)	334, 887, 951
MaeI	CTAG	3 cut(s)	567, 650, 737
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	3 cut(s)	424, 694, 831
MboI	GATC	3 cut(s)	422, 692, 829
MboII	GAAGA	3 cut(s)	312, 542, 839
MfeI	CAATTG	1 cut(s)	750
MflI	RGATCY	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	220
MluCI	AATT	6 cut(s)	88, 196, 331, 400, 582, 750
MluNI	TGGCCA	1 cut(s)	220
MlyI	GAGTC	1 cut(s)	610
Mox20I	TGGCCA	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	220
MseI	TTAA	4 cut(s)	261, 390, 711, 726
Msp20I	TGGCCA	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	3 cut(s)	143, 177, 469
MspR9I	CCNGG	2 cut(s)	144, 950
MunI	CAATTG	1 cut(s)	750
MvaI	CCWGG	1 cut(s)	950
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	875, 945
NciI	CCSGG	1 cut(s)	144
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	3 cut(s)	422, 692, 829
NlaIII	CATG	2 cut(s)	610, 802
NlaIV	GGNNCC	2 cut(s)	424, 453
NruI	TCGCGA	1 cut(s)	298
NsbI	TGCGCA	1 cut(s)	761
NspI	RCATGY	1 cut(s)	802
NspV	TTCGAA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	354
PciI	ACATGT	1 cut(s)	798
PfeI	GAWTC	5 cut(s)	203, 382, 512, 561, 611
PkrI	GCNGC	5 cut(s)	57, 121, 637, 871, 941
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PscI	ACATGT	1 cut(s)	798
PsiI	TTATAA	1 cut(s)	131
Psp1406I	AACGTT	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	948
PspGI	CCWGG	1 cut(s)	948
PspN4I	GGNNCC	2 cut(s)	424, 453
PspPI	GGNCC	2 cut(s)	158, 574
PstNI	CAGNNNCTG	1 cut(s)	945
PsuI	RGATCY	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	166
RruI	TCGCGA	1 cut(s)	298
RsaI	GTAC	3 cut(s)	268, 743, 954
RsaNI	GTAC	3 cut(s)	267, 742, 953
SaqAI	TTAA	4 cut(s)	261, 390, 711, 726
SatI	GCNGC	5 cut(s)	56, 120, 636, 870, 940
Sau3AI	GATC	3 cut(s)	422, 692, 829
Sau96I	GGNCC	2 cut(s)	158, 574
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	2 cut(s)	144, 950
SetI	ASST	9 cut(s)	141, 168, 233, 442, 495, 658, 717, 816, 954
SfaNI	GCATC	3 cut(s)	334, 887, 951
SfuI	TTCGAA	1 cut(s)	313
SinI	GGWCC	1 cut(s)	574
SmlI	CTYRAG	2 cut(s)	36, 435
SmoI	CTYRAG	2 cut(s)	36, 435
SpeI	ACTAGT	1 cut(s)	736
Sse9I	AATT	6 cut(s)	88, 196, 331, 400, 582, 750
SseBI	AGGCCT	1 cut(s)	354
SsiI	CCGC	2 cut(s)	507, 635
SspMI	CTAG	3 cut(s)	567, 650, 737
StuI	AGGCCT	1 cut(s)	354
StyD4I	CCNGG	2 cut(s)	142, 948
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	3 cut(s)	24, 313, 614
TasI	AATT	6 cut(s)	88, 196, 331, 400, 582, 750
TatI	WGTACW	2 cut(s)	266, 741
TauI	GCSGC	1 cut(s)	638
TfiI	GAWTC	5 cut(s)	203, 382, 512, 561, 611
Tru1I	TTAA	4 cut(s)	261, 390, 711, 726
Tru9I	TTAA	4 cut(s)	261, 390, 711, 726
TscAI	CASTG	1 cut(s)	702
TseI	GCWGC	4 cut(s)	55, 119, 869, 939
TspDTI	ATGAA	2 cut(s)	261, 930
TspGWI	ACGGA	1 cut(s)	655
TspRI	CASTG	1 cut(s)	702
VpaK11BI	GGWCC	1 cut(s)	574
XceI	RCATGY	1 cut(s)	802
XspI	CTAG	3 cut(s)	567, 650, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.