Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004831

Physical Location & Seq

Genomic Coordinates Reverse (-)

1476219 .. 1482284

Gene Structure 6066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG025000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAAATTGCACCACATTTGCTTTTCGGATCCACTCCTCTTTGCCGATTCTCTCTTTCTCAAGGTCTTTTTGGGGTGCCTTCAAATCTTTTCCGGTCTGTAATGCCTGCCATTCAGCTTCCCCACACAAGCGGAGATTCAATGTCTCAAATGGAAGACGCTCCTGCTACTTATGATGATAGTGGATTCCCTAGTGAGAACCAAATAATTGATATATGGAGGCAACTTCTCATGGAATCGACTCTATATATACACAGGCCGGCTGATAACTTGCTAGAAGGATCAAGTTCCGTCTTTAGGGTAACGGCTGACAATGGATCAGTGGACTTCAGACTTGTAACAGAGAACGCTGAAGTTGTTAACCAATCACTAGTGTACTTTTCAATTGAAATGCGCAATCGCTTTGGAGGGATGAGGCTTGATGTGGATAACGTGTCATATGAGGAGCTATTGGCTTTAGAAGATCATATAGGGTATGTCAGCACAGGGTTATCCGAGGAAGCAGCCGTTGCATCTCTCAAACGCAGTAGTTATTTTCTGCTTGCTGATGAAAATGCTCCTAAAGAGTTTTGCAGCATCTGCCAGGTACTCGCCGAGTTGGCAGATAGGGGCAGGGTTTTGTTCCCTGGAATGAACCTTATTGATTCAAACAGGACTCTAATTCAACCCAGGGAGCAGGATACCGAGACACAGTATCTAGTATACGCGGCACTCCTCGCCTTCACCTTCTACCAGCCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

247

Amino Acids

27.63

Weight (kDa)

4.46

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01850
malus_domestica	MD02G1016500.v1.1 MD15G1161000.v1.1
prunus_persica	Prupe.7G256200_v2.0.a1
pyrus_communis	pycom02g01460
rosa_chinensis	RchiOBHm_Chr2g0086821
rosa_laevigata	RLG00000015799 RLG00000015800 RLG00000015805 RLG00000015806
rosa_multiflora	Rmu_sc0010698.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154110 Rroxscaffold_2G00154130
rosa_rugosa	Rorug01G0469800 Rorug01G0469900 Rorug01G0470000 Rorug07G0271000
rosa_samantha	Rh2AG022600 Rh2AG024500 Rh2AG024600 Rh2AG024800 Rh2BG022800 Rh2BG023100 Rh2CG023500 Rh2CG023600 Rh2CG025100 Rh2DG023000 Rh2DG025000 Rh2DG025100
rosa_wichuraiana	Rw2G001790 Rw2G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	395
AccB1I	GGYRCC	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	702
AccII	CGCG	1 cut(s)	707
AciI	CCGC	2 cut(s)	132, 707
AclWI	GGATC	4 cut(s)	24, 37, 289, 325
AcuI	CTGAAG	2 cut(s)	313, 372
AfaI	GTAC	2 cut(s)	377, 588
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	6 cut(s)	84, 141, 384, 389, 648, 665
AhlI	ACTAGT	1 cut(s)	370
AjnI	CCWGG	3 cut(s)	582, 625, 668
AluBI	AGCT	2 cut(s)	118, 448
AluI	AGCT	2 cut(s)	118, 448
Alw26I	GTCTC	2 cut(s)	150, 680
AlwI	GGATC	4 cut(s)	24, 37, 289, 325
AlwNI	CAGNNNCTG	1 cut(s)	579
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	2 cut(s)	503, 573
AspLEI	GCGC	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	715
BamHI	GGATCC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	515, 585
BceAI	ACGGC	2 cut(s)	321, 491
BciT130I	CCWGG	3 cut(s)	584, 627, 670
BciVI	GTATCC	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	150, 680
BcuI	ACTAGT	1 cut(s)	370
BfaI	CTAG	4 cut(s)	192, 275, 371, 698
BfuI	GTATCC	1 cut(s)	673
BglI	GCCNNNNNGGC	1 cut(s)	599
BisI	GCNGC	3 cut(s)	504, 574, 708
BlsI	GCNGC	3 cut(s)	505, 575, 709
Bme1390I	CCNGG	3 cut(s)	584, 627, 670
BmiI	GGNNCC	2 cut(s)	31, 78
BmrFI	CCNGG	3 cut(s)	584, 627, 670
BmsI	GCATC	2 cut(s)	521, 585
BpiI	GAAGAC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	45
BsaJI	CCNNGG	4 cut(s)	495, 625, 668, 669
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse118I	RCCGGY	1 cut(s)	259
BseBI	CCWGG	3 cut(s)	584, 627, 670
BseDI	CCNNGG	4 cut(s)	495, 625, 668, 669
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseRI	GAGGAG	3 cut(s)	27, 458, 704
BseXI	GCAGC	2 cut(s)	515, 585
Bsh1236I	CGCG	1 cut(s)	707
BshFI	GGCC	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	94, 260
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	150, 680
BsnI	GGCC	1 cut(s)	259
Bsp143I	GATC	4 cut(s)	29, 281, 317, 463
BspACI	CCGC	2 cut(s)	132, 707
BspANI	GGCC	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	707
BspLI	GGNNCC	2 cut(s)	31, 78
BspPI	GGATC	4 cut(s)	24, 37, 289, 325
BspT107I	GGYRCC	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	4 cut(s)	495, 625, 668, 669
BssMI	GATC	4 cut(s)	29, 281, 317, 463
BssNAI	GTATAC	1 cut(s)	703
Bst1107I	GTATAC	1 cut(s)	703
Bst2UI	CCWGG	3 cut(s)	584, 627, 670
Bst4CI	ACNGT	1 cut(s)	693
BstAPI	GCANNNNNTGC	2 cut(s)	509, 579
BstC8I	GCNNGC	3 cut(s)	108, 261, 543
BstF5I	GGATG	1 cut(s)	417
BstFNI	CGCG	1 cut(s)	707
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	4 cut(s)	32, 284, 320, 466
BstMAI	GTCTC	2 cut(s)	150, 680
BstMBI	GATC	4 cut(s)	29, 281, 317, 463
BstMWI	GCNNNNNNNGC	4 cut(s)	509, 579, 599, 716
BstNI	CCWGG	3 cut(s)	584, 627, 670
BstSCI	CCNGG	3 cut(s)	582, 625, 668
BstUI	CGCG	1 cut(s)	707
BstV1I	GCAGC	2 cut(s)	515, 585
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BstZ17I	GTATAC	1 cut(s)	703
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	3 cut(s)	108, 261, 543
CaiI	CAGNNNCTG	1 cut(s)	579
CfoI	GCGC	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	259
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	376, 587
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	9 cut(s)	118, 259, 263, 308, 418, 448, 455, 506, 736
CviKI_1	RGCY	9 cut(s)	118, 259, 263, 308, 418, 448, 455, 506, 736
CviQI	GTAC	2 cut(s)	376, 587
DpnI	GATC	4 cut(s)	31, 283, 319, 465
DpnII	GATC	4 cut(s)	29, 281, 317, 463
Eco57I	CTGAAG	2 cut(s)	313, 372
EcoRII	CCWGG	3 cut(s)	582, 625, 668
FaeI	CATG	1 cut(s)	235
FatI	CATG	1 cut(s)	231
FauNDI	CATATG	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	3 cut(s)	504, 574, 708
FokI	GGATG	1 cut(s)	424
Fsp4HI	GCNGC	3 cut(s)	504, 574, 708
FspBI	CTAG	4 cut(s)	192, 275, 371, 698
FspI	TGCGCA	1 cut(s)	395
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	3 cut(s)	504, 574, 708
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	2 cut(s)	94, 260
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	7 cut(s)	48, 137, 186, 236, 241, 644, 655
HpaI	GTTAAC	1 cut(s)	361
HpaII	CCGG	2 cut(s)	94, 260
HphI	GGTGA	1 cut(s)	715
Hpy166II	GTNNAC	4 cut(s)	325, 361, 376, 703
Hpy188I	TCNGA	3 cut(s)	29, 332, 496
Hpy8I	GTNNAC	4 cut(s)	325, 361, 376, 703
HpyAV	CCTTC	4 cut(s)	90, 272, 730, 736
HpyCH4III	ACNGT	1 cut(s)	693
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	11, 512, 573
HpyF10VI	GCNNNNNNNGC	4 cut(s)	509, 579, 599, 716
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	1 cut(s)	394
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	29, 281, 317, 463
LmnI	GCTCC	4 cut(s)	166, 445, 562, 673
Lsp1109I	GCAGC	2 cut(s)	515, 585
LweI	GCATC	2 cut(s)	521, 585
MaeI	CTAG	4 cut(s)	192, 275, 371, 698
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	301, 337
MalI	GATC	4 cut(s)	31, 283, 319, 465
MboI	GATC	4 cut(s)	29, 281, 317, 463
MboII	GAAGA	2 cut(s)	167, 473
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	4 cut(s)	6, 207, 384, 660
MlyI	GAGTC	2 cut(s)	235, 649
MnlI	CCTC	7 cut(s)	48, 213, 401, 408, 436, 490, 725
MroNI	GCCGGC	1 cut(s)	259
MseI	TTAA	1 cut(s)	360
MspI	CCGG	2 cut(s)	94, 260
MspR9I	CCNGG	3 cut(s)	584, 627, 670
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	3 cut(s)	584, 627, 670
MvnI	CGCG	1 cut(s)	707
MwoI	GCNNNNNNNGC	4 cut(s)	509, 579, 599, 716
NaeI	GCCGGC	1 cut(s)	261
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	4 cut(s)	29, 281, 317, 463
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	2 cut(s)	31, 78
NmeAIII	GCCGAG	1 cut(s)	619
NsbI	TGCGCA	1 cut(s)	395
PasI	CCCWGGG	1 cut(s)	669
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	5 cut(s)	48, 137, 186, 236, 644
PkrI	GCNGC	3 cut(s)	505, 575, 709
PleI	GAGTC	2 cut(s)	235, 649
PpsI	GAGTC	2 cut(s)	235, 649
Psp6I	CCWGG	3 cut(s)	582, 625, 668
PspGI	CCWGG	3 cut(s)	582, 625, 668
PspN4I	GGNNCC	2 cut(s)	31, 78
PstNI	CAGNNNCTG	1 cut(s)	579
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	2 cut(s)	377, 588
RsaNI	GTAC	2 cut(s)	376, 587
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	3 cut(s)	504, 574, 708
Sau3AI	GATC	4 cut(s)	29, 281, 317, 463
SchI	GAGTC	2 cut(s)	235, 649
ScrFI	CCNGG	3 cut(s)	584, 627, 670
SetI	ASST	7 cut(s)	67, 120, 435, 450, 588, 639, 728
SfaNI	GCATC	2 cut(s)	521, 585
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
SpeI	ACTAGT	1 cut(s)	370
Sse9I	AATT	4 cut(s)	6, 207, 384, 660
SsiI	CCGC	2 cut(s)	132, 707
SspMI	CTAG	4 cut(s)	192, 275, 371, 698
StyD4I	CCNGG	3 cut(s)	582, 625, 668
TaaI	ACNGT	1 cut(s)	693
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	1 cut(s)	239
TasI	AATT	4 cut(s)	6, 207, 384, 660
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	710
TfiI	GAWTC	5 cut(s)	48, 137, 186, 236, 644
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	327
TseI	GCWGC	2 cut(s)	503, 573
TspDTI	ATGAA	2 cut(s)	564, 647
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	4 cut(s)	192, 275, 371, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.