Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004831

Physical Location & Seq

Genomic Coordinates Forward (+)

883690 .. 884808

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCAACTTGTTCCCATGCTAATCCTCCTCGAGAACCAACTTCAATTCGGGAACTTGCGCCACATTAATTCTTGGATCCGCTCCTCTTCGCCAATTTTTTTCCGATCTTTATGGCCTCTCCACATAAGACACAGAGGTTATACATTTCGATTAGGTCAGGTTTCTGCGTCTTCTGATGATAACGGGTTCCAAAATGAGACCCGAATTGATCTGTGGAGGCAACTTCTCATGGAGTCGACTCTATACATGCACAGGCCACCTGATAGCTTGTTAGAAGGTCCGACTTCATTTTTTGTCATAACAGCCAGCCGCGGTGTAAATTTTATTATGAACGCTGGAGCTACTTACCAACAACCTCTGCACTTCTCGATTGAAATGCGTAATCGTTCCGGAGCAATGTGGCTCGATGTGGATAGCATGTCATATGAGGTACACTCTCACATCGGAACTTTCTTTGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

155

Amino Acids

17.97

Weight (kDa)

7.07

Isoelectric Point (pI)

59.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01850
malus_domestica	MD02G1016500.v1.1 MD15G1161000.v1.1
prunus_persica	Prupe.7G256200_v2.0.a1
pyrus_communis	pycom02g01460
rosa_chinensis	RchiOBHm_Chr2g0086821
rosa_laevigata	RLG00000015799 RLG00000015800 RLG00000015805 RLG00000015806
rosa_multiflora	Rmu_sc0010698.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154110 Rroxscaffold_2G00154130
rosa_rugosa	Rorug01G0469800 Rorug01G0469900 Rorug01G0470000 Rorug07G0271000
rosa_samantha	Rh2AG022600 Rh2AG024500 Rh2AG024600 Rh2AG024800 Rh2BG022800 Rh2BG023100 Rh2CG023500 Rh2CG023600 Rh2CG025100 Rh2DG023000 Rh2DG025000 Rh2DG025100
rosa_wichuraiana	Rw2G001790 Rw2G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	236
AccII	CGCG	1 cut(s)	312
AccIII	TCCGGA	1 cut(s)	389
AciI	CCGC	3 cut(s)	79, 310, 312
AclWI	GGATC	2 cut(s)	70, 83
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	44, 374
AluBI	AGCT	2 cut(s)	267, 341
AluI	AGCT	2 cut(s)	267, 341
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	70, 83
Ama87I	CYCGRG	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	389
AoxI	GGCC	2 cut(s)	113, 254
ApoI	RAATTY	1 cut(s)	319
AseI	ATTAAT	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	278
BamHI	GGATCC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	162
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BcoDI	GTCTC	1 cut(s)	191
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	77, 188
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	310
BseMI	GCAATG	1 cut(s)	402
BseRI	GAGGAG	2 cut(s)	17, 73
BsgI	GTGCAG	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	115, 256
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	390
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	115, 256
Bso31I	GGTCTC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	389
Bsp143I	GATC	3 cut(s)	75, 104, 208
BspACI	CCGC	3 cut(s)	79, 310, 312
BspANI	GGCC	2 cut(s)	115, 256
BspEI	TCCGGA	1 cut(s)	389
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	77, 188
BspPI	GGATC	2 cut(s)	70, 83
BspTNI	GGTCTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	3 cut(s)	75, 104, 208
Bst6I	CTCTTC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	307
BstDSI	CCRYGG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	3 cut(s)	78, 107, 211
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	3 cut(s)	75, 104, 208
BstNSI	RCATGY	2 cut(s)	250, 421
BstUI	CGCG	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	115, 256
BtgI	CCRYGG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	278
Cfr42I	CCGCGG	1 cut(s)	313
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	4 cut(s)	16, 229, 247, 418
CviJI	RGCY	7 cut(s)	115, 256, 267, 305, 309, 341, 403
CviKI_1	RGCY	7 cut(s)	115, 256, 267, 305, 309, 341, 403
CviQI	GTAC	1 cut(s)	431
DpnI	GATC	3 cut(s)	77, 106, 210
DpnII	GATC	3 cut(s)	75, 104, 208
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	29
FaeI	CATG	4 cut(s)	19, 232, 250, 421
FatI	CATG	4 cut(s)	15, 228, 246, 417
FauNDI	CATATG	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	310
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	115, 256
HapII	CCGG	1 cut(s)	390
HgaI	GACGC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	19, 232, 250, 421
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HinfI	GANTC	2 cut(s)	233, 238
HpaII	CCGG	1 cut(s)	390
Hpy166II	GTNNAC	2 cut(s)	237, 433
Hpy188I	TCNGA	4 cut(s)	104, 175, 282, 446
Hpy188III	TCNNGA	4 cut(s)	31, 49, 367, 390
Hpy8I	GTNNAC	2 cut(s)	237, 433
HpyAV	CCTTC	1 cut(s)	269
HpyCH4V	TGCA	3 cut(s)	4, 250, 361
Hsp92II	CATG	4 cut(s)	19, 232, 250, 421
HspAI	GCGC	1 cut(s)	58
Kpn2I	TCCGGA	1 cut(s)	389
KspI	CCGCGG	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	75, 104, 208
LmnI	GCTCC	3 cut(s)	86, 338, 392
LpnPI	CCDG	6 cut(s)	143, 238, 273, 319, 321, 403
MalI	GATC	3 cut(s)	77, 106, 210
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	3 cut(s)	75, 104, 208
MboII	GAAGA	2 cut(s)	78, 162
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	5 cut(s)	44, 67, 93, 204, 319
MlyI	GAGTC	2 cut(s)	232, 242
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	8 cut(s)	35, 38, 94, 126, 128, 210, 366, 421
MroI	TCCGGA	1 cut(s)	389
MseI	TTAA	2 cut(s)	66, 463
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	312
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	3 cut(s)	75, 104, 208
NlaIII	CATG	4 cut(s)	19, 232, 250, 421
NlaIV	GGNNCC	2 cut(s)	77, 188
NspI	RCATGY	2 cut(s)	250, 421
PaeR7I	CTCGAG	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	311
PleI	GAGTC	2 cut(s)	232, 241
PpsI	GAGTC	2 cut(s)	232, 241
PshBI	ATTAAT	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	77, 188
PspPI	GGNCC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
SacII	CCGCGG	1 cut(s)	313
SalI	GTCGAC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	66, 463
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	3 cut(s)	75, 104, 208
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	2 cut(s)	232, 242
SetI	ASST	9 cut(s)	139, 157, 162, 262, 269, 280, 343, 358, 432
Sfr274I	CTCGAG	1 cut(s)	29
Sfr303I	CCGCGG	1 cut(s)	313
SgrBI	CCGCGG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	5 cut(s)	44, 67, 93, 204, 319
SsiI	CCGC	3 cut(s)	79, 310, 312
TaqI	TCGA	5 cut(s)	30, 148, 236, 368, 405
TasI	AATT	5 cut(s)	44, 67, 93, 204, 319
TauI	GCSGC	1 cut(s)	312
Tru1I	TTAA	2 cut(s)	66, 463
Tru9I	TTAA	2 cut(s)	66, 463
TspDTI	ATGAA	2 cut(s)	276, 344
VpaK11BI	GGWCC	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	2 cut(s)	250, 421
XhoI	CTCGAG	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.