Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004831

Physical Location & Seq

Genomic Coordinates Forward (+)

1749429 .. 1750187

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG024800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGATTGTGTGACGCTCCACTTAAAAGCTCCCACGGAGATATTGGATCTAACTCAGATCCATGCAGCTGAGTTGGCAAATAGGGGCAGCGTTTTGTTCCCTGGAGCGAACCTTGTCGATTCAAACAGGACTCTAATTGAGCCCAGGGAGCAGGATACTGAGACACAGTATCGAGCTAGGTCAGCTCTACCGGATTTTCAGTATACTGGGTACTCCTCGCCTTCACCTTCTACCAGCAGATGTAGCTGGCTTTCTGGACTGGGAGACTGTCCCTCGGTTTCGCAGCCAACCTCCTCCGACGTTTCCCGATGCTTGGTGCTTATGGCAATCGGCTCCTGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.44

Weight (kDa)

5.18

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01850
malus_domestica	MD02G1016500.v1.1 MD15G1161000.v1.1
prunus_persica	Prupe.7G256200_v2.0.a1
pyrus_communis	pycom02g01460
rosa_chinensis	RchiOBHm_Chr2g0086821
rosa_laevigata	RLG00000015799 RLG00000015800 RLG00000015805 RLG00000015806
rosa_multiflora	Rmu_sc0010698.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154110 Rroxscaffold_2G00154130
rosa_rugosa	Rorug01G0469800 Rorug01G0469900 Rorug01G0470000 Rorug07G0271000
rosa_samantha	Rh2AG022600 Rh2AG024500 Rh2AG024600 Rh2AG024800 Rh2BG022800 Rh2BG023100 Rh2CG023500 Rh2CG023600 Rh2CG025100 Rh2DG023000 Rh2DG025000 Rh2DG025100
rosa_wichuraiana	Rw2G001790 Rw2G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	203
AciI	CCGC	1 cut(s)	340
AclWI	GGATC	2 cut(s)	52, 54
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	1 cut(s)	123
AjnI	CCWGG	3 cut(s)	100, 143, 335
AluBI	AGCT	5 cut(s)	29, 68, 176, 185, 246
AluI	AGCT	5 cut(s)	29, 68, 176, 185, 246
Alw26I	GTCTC	2 cut(s)	155, 258
AlwI	GGATC	2 cut(s)	52, 54
ApeKI	GCWGC	3 cut(s)	65, 87, 283
AsuHPI	GGTGA	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	77, 99, 295
BciT130I	CCWGG	3 cut(s)	102, 145, 337
BciVI	GTATCC	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	155, 258
BfaI	CTAG	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	148
BisI	GCNGC	3 cut(s)	66, 88, 284
BlsI	GCNGC	3 cut(s)	67, 89, 285
Bme1390I	CCNGG	3 cut(s)	102, 145, 337
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	3 cut(s)	102, 145, 337
BmrI	ACTGGG	2 cut(s)	216, 269
BmsI	GCATC	1 cut(s)	299
BmuI	ACTGGG	2 cut(s)	216, 269
BpmI	CTGGAG	1 cut(s)	123
BsaJI	CCNNGG	5 cut(s)	33, 100, 143, 144, 273
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	211, 264
BseBI	CCWGG	3 cut(s)	102, 145, 337
BseDI	CCNNGG	5 cut(s)	33, 100, 143, 144, 273
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	3 cut(s)	60, 68, 150
BseNI	ACTGG	2 cut(s)	211, 264
BseRI	GAGGAG	2 cut(s)	205, 283
BseXI	GCAGC	3 cut(s)	77, 99, 295
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	155, 258
BsmFI	GGGAC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	46, 57
BspACI	CCGC	1 cut(s)	340
BspCNI	CTCAG	3 cut(s)	61, 67, 151
BspLI	GGNNCC	1 cut(s)	334
BspPI	GGATC	2 cut(s)	52, 54
BsrI	ACTGG	2 cut(s)	211, 264
BssECI	CCNNGG	5 cut(s)	33, 100, 143, 144, 273
BssMI	GATC	2 cut(s)	46, 57
BssNAI	GTATAC	1 cut(s)	204
Bst1107I	GTATAC	1 cut(s)	204
Bst2UI	CCWGG	3 cut(s)	102, 145, 337
Bst4CI	ACNGT	2 cut(s)	168, 269
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	3 cut(s)	54, 69, 159
BstDSI	CCRYGG	1 cut(s)	33
BstKTI	GATC	2 cut(s)	49, 60
BstMAI	GTCTC	2 cut(s)	155, 258
BstMBI	GATC	2 cut(s)	46, 57
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 148, 182, 243
BstNI	CCWGG	3 cut(s)	102, 145, 337
BstSCI	CCNGG	3 cut(s)	100, 143, 335
BstV1I	GCAGC	3 cut(s)	77, 99, 295
BstX2I	RGATCY	2 cut(s)	46, 57
BstYI	RGATCY	2 cut(s)	46, 57
BstZ17I	GTATAC	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	248
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	9 cut(s)	29, 68, 142, 176, 185, 246, 250, 286, 333
CviKI_1	RGCY	9 cut(s)	29, 68, 142, 176, 185, 246, 250, 286, 333
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	3 cut(s)	54, 69, 159
DpnI	GATC	2 cut(s)	48, 59
DpnII	GATC	2 cut(s)	46, 57
Eco24I	GRGCYC	1 cut(s)	144
EcoRII	CCWGG	3 cut(s)	100, 143, 335
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	65
FaiI	YATR	3 cut(s)	63, 204, 323
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	3 cut(s)	66, 88, 284
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	3 cut(s)	66, 88, 284
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	3 cut(s)	66, 88, 284
GsuI	CTGGAG	1 cut(s)	123
HapII	CCGG	1 cut(s)	191
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	65
HinfI	GANTC	2 cut(s)	119, 130
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	2 cut(s)	57, 298
Hpy188III	TCNNGA	2 cut(s)	255, 306
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	231, 237
HpyCH4III	ACNGT	2 cut(s)	168, 269
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 148, 182, 243
HpyF3I	CTNAG	3 cut(s)	54, 69, 159
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	65
Kzo9I	GATC	2 cut(s)	46, 57
LmnI	GCTCC	5 cut(s)	21, 34, 104, 148, 338
Lsp1109I	GCAGC	3 cut(s)	77, 99, 295
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	48, 59
MboI	GATC	2 cut(s)	46, 57
MflI	RGATCY	2 cut(s)	46, 57
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	4 cut(s)	226, 283, 301, 304
MseI	TTAA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	3 cut(s)	102, 145, 337
MvaI	CCWGG	3 cut(s)	102, 145, 337
MwoI	GCNNNNNNNGC	4 cut(s)	74, 148, 182, 243
NdeII	GATC	2 cut(s)	46, 57
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	10
PasI	CCCWGGG	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	67, 89, 285
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	3 cut(s)	100, 143, 335
PspGI	CCWGG	3 cut(s)	100, 143, 335
PspN4I	GGNNCC	1 cut(s)	334
PsuI	RGATCY	2 cut(s)	46, 57
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	3 cut(s)	66, 88, 284
Sau3AI	GATC	2 cut(s)	46, 57
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	3 cut(s)	102, 145, 337
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	299
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	340
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	3 cut(s)	100, 143, 335
TaaI	ACNGT	2 cut(s)	168, 269
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	117, 172
TasI	AATT	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	65, 87, 283
Tsp45I	GTSAC	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	203
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.