Rroxscaffold_2G00154110
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004831
Physical Location & Seq
Forward (+)
90815934 .. 90816503
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154110.1

Sequence Viewer

Length: 318 bp
ATGAACCTTGTCGATTCAAACAGGACTCTAATTGAGCCCAGGGAGCGGGATACTGAGACACAGTATCTAGGTCAGCTCTACTGGATTTTCAGTATACGCGGTACTCCTCGCCTTCACCTTCTACCAGCAGATGTAGCTGGCTTTCGGGACTGGGAGACTGTCCCTCGGTTTCGCAGAGCCAACCTCCTCCGACGTTTCCCGATGCTTGGTGCTAATGGCAATCGGCTCCCGGCGCATTTATTGAGCTACTCTCCAGTAGAAAGGCTGTCAACTACTGCCGCGATTGGGCATGATATTTTCCAGGAACTGCACCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

105

Amino Acids

12.18

Weight (kDa)

9.66

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 46
AccI GTMKAC 1 cut(s) 94
AccII CGCG 2 cut(s) 99, 281
AciI CCGC 3 cut(s) 46, 99, 279
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 3 cut(s) 45, 206, 285
AgsI TTSAA 1 cut(s) 18
AjnI CCWGG 2 cut(s) 38, 300
AluBI AGCT 3 cut(s) 76, 137, 246
AluI AGCT 3 cut(s) 76, 137, 246
Alw26I GTCTC 2 cut(s) 50, 149
AlwNI CAGNNNCTG 1 cut(s) 307
AspLEI GCGC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 39
BciT130I CCWGG 2 cut(s) 40, 302
BciVI GTATCC 1 cut(s) 43
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 2 cut(s) 50, 149
BfaI CTAG 1 cut(s) 68
BfuI GTATCC 1 cut(s) 43
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 3 cut(s) 40, 230, 302
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 3 cut(s) 40, 230, 302
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 160
BplI GAGNNNNNCTC 4 cut(s) 168, 200, 235, 267
BpmI CTGGAG 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 230
BsaJI CCNNGG 3 cut(s) 38, 39, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 206, 285
Bse1I ACTGG 3 cut(s) 86, 155, 254
BseBI CCWGG 2 cut(s) 40, 302
BseDI CCNNGG 3 cut(s) 38, 39, 164
BseLI CCNNNNNNNGG 3 cut(s) 45, 206, 285
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 3 cut(s) 86, 155, 254
BseRI GAGGAG 2 cut(s) 96, 176
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 2 cut(s) 99, 281
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 2 cut(s) 146, 161
BslI CCNNNNNNNGG 3 cut(s) 45, 206, 285
BsmAI GTCTC 2 cut(s) 50, 149
BsmFI GGGAC 2 cut(s) 146, 161
Bsp1286I GDGCHC 1 cut(s) 39
BspACI CCGC 3 cut(s) 46, 99, 279
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 2 cut(s) 99, 281
BspLI GGNNCC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 46
BsrI ACTGG 3 cut(s) 86, 155, 254
BssECI CCNNGG 3 cut(s) 38, 39, 164
BssNAI GTATAC 1 cut(s) 95
Bst1107I GTATAC 1 cut(s) 95
Bst2UI CCWGG 2 cut(s) 40, 302
Bst4CI ACNGT 2 cut(s) 63, 160
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 54
BstFNI CGCG 2 cut(s) 99, 281
BstHHI GCGC 1 cut(s) 235
BstMAI GTCTC 2 cut(s) 50, 149
BstMWI GCNNNNNNNGC 3 cut(s) 43, 134, 232
BstNI CCWGG 2 cut(s) 40, 302
BstSCI CCNGG 3 cut(s) 38, 228, 300
BstUI CGCG 2 cut(s) 99, 281
BstZ17I GTATAC 1 cut(s) 95
BsuI GTATCC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 139
CaiI CAGNNNCTG 1 cut(s) 307
CfoI GCGC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 290
CviJI RGCY 8 cut(s) 37, 76, 137, 141, 179, 226, 246, 265
CviKI_1 RGCY 8 cut(s) 37, 76, 137, 141, 179, 226, 246, 265
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 39
EcoRII CCWGG 2 cut(s) 38, 300
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 1 cut(s) 293
FaiI YATR 2 cut(s) 95, 291
FaqI GGGAC 2 cut(s) 146, 161
FatI CATG 1 cut(s) 289
FauI CCCGC 1 cut(s) 39
FblI GTMKAC 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 279
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 237
HapII CCGG 1 cut(s) 230
HhaI GCGC 1 cut(s) 235
Hin1II CATG 1 cut(s) 293
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 2 cut(s) 14, 25
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 2 cut(s) 95, 270
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 2 cut(s) 146, 199
Hpy8I GTNNAC 2 cut(s) 95, 270
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 122, 128
HpyCH4III ACNGT 2 cut(s) 63, 160
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 134, 232
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 1 cut(s) 293
HspAI GCGC 1 cut(s) 233
LmnI GCTCC 2 cut(s) 43, 231
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 193
MbiI CCGCTC 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 30
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 4 cut(s) 117, 174, 194, 197
MseI TTAA 1 cut(s) 316
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 3 cut(s) 40, 230, 302
MvaI CCWGG 2 cut(s) 40, 302
MvnI CGCG 2 cut(s) 99, 281
MwoI GCNNNNNNNGC 3 cut(s) 43, 134, 232
NciI CCSGG 1 cut(s) 230
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 227
PasI CCCWGGG 1 cut(s) 39
PfeI GAWTC 1 cut(s) 14
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp6I CCWGG 2 cut(s) 38, 300
PspGI CCWGG 2 cut(s) 38, 300
PspN4I GGNNCC 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 1 cut(s) 279
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 3 cut(s) 40, 230, 302
SduI GDGCHC 1 cut(s) 39
SetI ASST 8 cut(s) 9, 73, 78, 120, 139, 186, 196, 248
SfaNI GCATC 1 cut(s) 192
Sse9I AATT 1 cut(s) 30
SsiI CCGC 3 cut(s) 46, 99, 279
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 3 cut(s) 38, 228, 300
TaaI ACNGT 2 cut(s) 63, 160
TaiI ACGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 30
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 94
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.