Rmu_sc0010698.1_g000004

RING-H2 zinc finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010698.1
OG0004831
Physical Location & Seq
Reverse (-)
14937 .. 20937
6001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010698.1_g000004.1.cds

Sequence Viewer

Length: 558 bp
atgagcaatcgctttggagggatgaggcatgatgtggataacgtgtcatatgaggagctattggctttagaagatcatatagggtatgtcagcacagggttatccgaggaagcagccgttgcatctctcaaacgcagtagttattttctgcttgctgatgaaaatgctcctaaagagttttgcagcatctgccaggtactcgccgagttggcagataggggcagggttttgttccctggaatgaaccttattgattcaaacaggactctaattcaacccagggagcaggataccgagacacagtatctaggtcagctatacaagattttcagtatacgcggcactcctcgccttcaccttctaccagccgatgtagctggctttctgtactgggagactgtcccttggtttcgcagagccaacctcctcccacgtttcccgatgcttggtgtttctggcaatcggctcctggcgcgtttgttgagctactcttcagtagataggctgtcagctgctgccgcgattgggcactactttttagaggaactgcacccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

185

Amino Acids

20.88

Weight (kDa)

5.73

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 334
AccII CGCG 3 cut(s) 339, 475, 521
AciI CCGC 2 cut(s) 339, 519
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 2 cut(s) 198, 389
AfiI CCNNNNNNNGG 2 cut(s) 446, 525
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 2 cut(s) 258, 275
AjnI CCWGG 4 cut(s) 192, 235, 278, 468
AluBI AGCT 5 cut(s) 58, 316, 377, 486, 512
AluI AGCT 5 cut(s) 58, 316, 377, 486, 512
Alw26I GTCTC 2 cut(s) 290, 389
AlwNI CAGNNNCTG 2 cut(s) 189, 515
ApeKI GCWGC 4 cut(s) 113, 183, 512, 515
AspLEI GCGC 1 cut(s) 475
AsuHPI GGTGA 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 531
BbvI GCAGC 4 cut(s) 125, 195, 499, 502
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 4 cut(s) 194, 237, 280, 470
BciVI GTATCC 1 cut(s) 283
BcoDI GTCTC 2 cut(s) 290, 389
BfaI CTAG 1 cut(s) 308
BfuI GTATCC 1 cut(s) 283
BglI GCCNNNNNGGC 1 cut(s) 209
BisI GCNGC 6 cut(s) 114, 184, 340, 513, 516, 519
BlsI GCNGC 6 cut(s) 115, 185, 341, 514, 517, 520
Bme1390I CCNGG 4 cut(s) 194, 237, 280, 470
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 4 cut(s) 194, 237, 280, 470
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 3 cut(s) 131, 195, 432
BmuI ACTGGG 1 cut(s) 400
BplI GAGNNNNNCTC 2 cut(s) 408, 440
BsaJI CCNNGG 5 cut(s) 105, 235, 278, 279, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 446, 525
Bse1I ACTGG 1 cut(s) 395
BseBI CCWGG 4 cut(s) 194, 237, 280, 470
BseDI CCNNGG 5 cut(s) 105, 235, 278, 279, 404
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 2 cut(s) 446, 525
BseNI ACTGG 1 cut(s) 395
BseRI GAGGAG 3 cut(s) 68, 336, 416
BseSI GKGCMC 1 cut(s) 531
BseXI GCAGC 4 cut(s) 125, 195, 499, 502
BsgI GTGCAG 1 cut(s) 533
Bsh1236I CGCG 3 cut(s) 339, 475, 521
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 2 cut(s) 446, 525
BsmAI GTCTC 2 cut(s) 290, 389
BsmFI GGGAC 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 2 cut(s) 339, 519
BspFNI CGCG 3 cut(s) 339, 475, 521
BspLI GGNNCC 1 cut(s) 467
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 5 cut(s) 105, 235, 278, 279, 404
BssMI GATC 1 cut(s) 73
BssNAI GTATAC 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 404
Bst1107I GTATAC 1 cut(s) 335
Bst2UI CCWGG 4 cut(s) 194, 237, 280, 470
Bst4CI ACNGT 2 cut(s) 303, 400
Bst6I CTCTTC 1 cut(s) 496
BstAPI GCANNNNNTGC 2 cut(s) 119, 189
BstC8I GCNNGC 2 cut(s) 153, 379
BstF5I GGATG 1 cut(s) 27
BstFNI CGCG 3 cut(s) 339, 475, 521
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 2 cut(s) 290, 389
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 7 cut(s) 119, 189, 209, 348, 374, 472, 518
BstNI CCWGG 4 cut(s) 194, 237, 280, 470
BstSCI CCNGG 4 cut(s) 192, 235, 278, 468
BstSLI GKGCMC 1 cut(s) 531
BstUI CGCG 3 cut(s) 339, 475, 521
BstV1I GCAGC 4 cut(s) 125, 195, 499, 502
BstZ17I GTATAC 1 cut(s) 335
BsuI GTATCC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 27
Cac8I GCNNGC 2 cut(s) 153, 379
CaiI CAGNNNCTG 2 cut(s) 189, 515
CfoI GCGC 1 cut(s) 475
Csp6I GTAC 2 cut(s) 197, 388
CviAII CATG 1 cut(s) 29
CviQI GTAC 2 cut(s) 197, 388
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
Eco130I CCWWGG 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 477
EcoRII CCWGG 4 cut(s) 192, 235, 278, 468
EcoT14I CCWWGG 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 1 cut(s) 32
FaiI YATR 8 cut(s) 30, 49, 51, 78, 80, 87, 319, 335
FaqI GGGAC 1 cut(s) 386
FatI CATG 1 cut(s) 28
FauNDI CATATG 1 cut(s) 49
FblI GTMKAC 1 cut(s) 334
Fnu4HI GCNGC 6 cut(s) 114, 184, 340, 513, 516, 519
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 6 cut(s) 114, 184, 340, 513, 516, 519
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 474
GluI GCNGC 6 cut(s) 114, 184, 340, 513, 516, 519
HhaI GCGC 1 cut(s) 475
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HinfI GANTC 2 cut(s) 254, 265
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 439
Hpy8I GTNNAC 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 362, 368
HpyCH4III ACNGT 2 cut(s) 303, 400
HpyCH4IV ACGT 2 cut(s) 42, 433
HpyCH4V TGCA 3 cut(s) 122, 183, 550
HpyF10VI GCNNNNNNNGC 7 cut(s) 119, 189, 209, 348, 374, 472, 518
HpySE526I ACGT 2 cut(s) 42, 433
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 1 cut(s) 473
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 4 cut(s) 55, 172, 283, 471
Lsp1109I GCAGC 4 cut(s) 125, 195, 499, 502
LweI GCATC 3 cut(s) 131, 195, 432
MaeI CTAG 1 cut(s) 308
MaeII ACGT 2 cut(s) 42, 433
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 83, 483
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 1 cut(s) 270
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 8 cut(s) 11, 18, 46, 100, 357, 434, 437, 535
MseI TTAA 1 cut(s) 556
MspA1I CMGCKG 1 cut(s) 512
MspR9I CCNGG 4 cut(s) 194, 237, 280, 470
MvaI CCWGG 4 cut(s) 194, 237, 280, 470
MvnI CGCG 3 cut(s) 339, 475, 521
MwoI GCNNNNNNNGC 7 cut(s) 119, 189, 209, 348, 374, 472, 518
NdeI CATATG 1 cut(s) 49
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 467
NmeAIII GCCGAG 1 cut(s) 229
PasI CCCWGGG 1 cut(s) 279
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 6 cut(s) 115, 185, 341, 514, 517, 520
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp6I CCWGG 4 cut(s) 192, 235, 278, 468
PspGI CCWGG 4 cut(s) 192, 235, 278, 468
PspN4I GGNNCC 1 cut(s) 467
PstNI CAGNNNCTG 2 cut(s) 189, 515
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 198, 389
RsaNI GTAC 2 cut(s) 197, 388
SaqAI TTAA 1 cut(s) 556
SatI GCNGC 6 cut(s) 114, 184, 340, 513, 516, 519
Sau3AI GATC 1 cut(s) 73
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 4 cut(s) 194, 237, 280, 470
SduI GDGCHC 1 cut(s) 531
SfaNI GCATC 3 cut(s) 131, 195, 432
Sse9I AATT 1 cut(s) 270
SsiI CCGC 2 cut(s) 339, 519
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 4 cut(s) 192, 235, 278, 468
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 2 cut(s) 303, 400
TaiI ACGT 2 cut(s) 45, 436
TasI AATT 1 cut(s) 270
TatI WGTACW 1 cut(s) 387
TauI GCSGC 2 cut(s) 342, 521
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 1 cut(s) 556
Tru9I TTAA 1 cut(s) 556
TseI GCWGC 4 cut(s) 113, 183, 512, 515
TspDTI ATGAA 2 cut(s) 174, 257
XmiI GTMKAC 1 cut(s) 334
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.