Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004831

Physical Location & Seq

Genomic Coordinates Forward (+)

1552583 .. 1555120

Gene Structure 2538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015806

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAACAAATACGAACGTGTCCGGACGCTTTCCAAGACTGGGAGGTACGGCAAAGTCTACTCCGTGAGGAACAAGCAGACGAATGAGTATTTCATCGCCCAAGAATTCAATCGGAGAGGCCTTGAAGTTGCCCGGCGCGAATGCTGGTTCCTGGACGAGCCATCCGGGTCGGGTCATGTTATCAAGAAAGTGGAGGAAATCCCGAACTCCGGTGAGCGACTCGCCGTCGCGGTGGTCTACGAAGCCCTTGCCGCGACAAGTCTGAGGCGGTTCTTGGACGCCAACCCCGAACAGGCTCTGGTGCTCCGGGTCGTCAAATCGATCACATACCAAATCTTGAAGGGTTTGGCTTACGCTCATGGCCTGGGTATATATATTTTTCACCTTGATATCCTGCCCAGAAAGATCGCCGTCGCGGTCGCCGACAATGGGTCGTTGACAGTCAAGATAGTGGATTTCGGGGACGCCAGAAGGGTGGGTCCACCGGAACCCGTCACTCCGAGACATCGAAAAGGTGAATCTTTACTACAGTCGCCGGAGCAACTTATGGGCTCCACAAGCTACGGCGCCGCCGTCGACATGTGGGCTGTCGGATGCATTCTTGTAGCAGAAGCAGTAGTAGTAGCAGGAGCAGCTGAACGTGTCCTCGGTTCAGTAGCAGTTTTATTTGCAGTAGCAGGAGCAACTGAAAGTGTCCTCGATTCAATAGCAGCTGAAAGTGTCCTCGTTTCAATAGCAACTTCATTTGCAGTAGCAGTAGCAGTAGCAGGAGCAGTAGTAGTAGCAGGAGCAATAGCAGTAACAGTAGCAATAGTAGTAGCAGGAGCAGCTAAACATGTCCTCCGTTCAGTAGCAGCTTCATTGGCAGTAGCAGTAGCAGGAGCAGGAGTTAGATCTGTCAAATTCAATTTGGCTTTAATCTGGTTCATAAGGAAAATCCAGCAAATCATTCAAATTCGGAAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

323

Amino Acids

34.34

Weight (kDa)

9.72

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 202	3.5e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	75 - 201	1.2e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01850
malus_domestica	MD02G1016500.v1.1 MD15G1161000.v1.1
prunus_persica	Prupe.7G256200_v2.0.a1
pyrus_communis	pycom02g01460
rosa_chinensis	RchiOBHm_Chr2g0086821
rosa_laevigata	RLG00000015799 RLG00000015800 RLG00000015805 RLG00000015806
rosa_multiflora	Rmu_sc0010698.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154110 Rroxscaffold_2G00154130
rosa_rugosa	Rorug01G0469800 Rorug01G0469900 Rorug01G0470000 Rorug07G0271000
rosa_samantha	Rh2AG022600 Rh2AG024500 Rh2AG024600 Rh2AG024800 Rh2BG022800 Rh2BG023100 Rh2CG023500 Rh2CG023600 Rh2CG025100 Rh2DG023000 Rh2DG025000 Rh2DG025100
rosa_wichuraiana	Rw2G001790 Rw2G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	566
AccI	GTMKAC	3 cut(s)	57, 237, 576
AccII	CGCG	4 cut(s)	138, 230, 254, 416
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	5 cut(s)	230, 252, 268, 416, 570
AcsI	RAATTY	3 cut(s)	104, 902, 954
AcyI	GRCGYC	3 cut(s)	279, 465, 567
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	4 cut(s)	39, 209, 292, 429
AflIII	ACRYGT	4 cut(s)	16, 579, 640, 835
AgsI	TTSAA	7 cut(s)	109, 125, 340, 705, 732, 907, 953
AhdI	GACNNNNNGTC	2 cut(s)	224, 430
AjnI	CCWGG	2 cut(s)	150, 363
AluBI	AGCT	5 cut(s)	561, 635, 713, 830, 857
AluI	AGCT	5 cut(s)	561, 635, 713, 830, 857
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	496
AlwNI	CAGNNNCTG	1 cut(s)	298
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	2 cut(s)	118, 361
ApeKI	GCWGC	4 cut(s)	632, 710, 827, 854
ApoI	RAATTY	3 cut(s)	104, 902, 954
AspLEI	GCGC	2 cut(s)	138, 569
AspS9I	GGNCC	1 cut(s)	479
AsuC2I	CCSGG	3 cut(s)	133, 166, 308
AsuHPI	GGTGA	3 cut(s)	224, 374, 527
AvaII	GGWCC	1 cut(s)	479
BanI	GGYRCC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	554
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	4 cut(s)	644, 722, 839, 866
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	5 cut(s)	64, 209, 395, 557, 580
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	2 cut(s)	152, 365
BcnI	CCSGG	3 cut(s)	133, 166, 308
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	1 cut(s)	967
BfmI	CTRYAG	1 cut(s)	527
BfoI	RGCGCY	1 cut(s)	570
BglII	AGATCT	1 cut(s)	893
BisI	GCNGC	6 cut(s)	252, 570, 633, 711, 828, 855
BlsI	GCNGC	6 cut(s)	253, 571, 634, 712, 829, 856
Bme1390I	CCNGG	5 cut(s)	133, 152, 166, 308, 365
Bme18I	GGWCC	1 cut(s)	479
BmeRI	GACNNNNNGTC	2 cut(s)	224, 430
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	5 cut(s)	149, 480, 489, 553, 568
BmrFI	CCNGG	5 cut(s)	133, 152, 166, 308, 365
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	584
BmuI	ACTGGG	1 cut(s)	48
BpuMI	CCSGG	3 cut(s)	133, 166, 308
Bsa29I	ATCGAT	1 cut(s)	320
BsaHI	GRCGYC	3 cut(s)	279, 465, 567
BsaJI	CCNNGG	2 cut(s)	364, 646
BsaWI	WCCGGW	3 cut(s)	21, 209, 484
BsaXI	ACNNNNNCTCC	6 cut(s)	762, 792, 825, 855, 873, 903
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 209, 292, 429
Bse1I	ACTGG	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	152, 365
BseCI	ATCGAT	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	364, 646
BseGI	GGATG	2 cut(s)	161, 599
BseLI	CCNNNNNNNGG	4 cut(s)	39, 209, 292, 429
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	4 cut(s)	644, 722, 839, 866
Bsh1236I	CGCG	4 cut(s)	138, 230, 254, 416
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	120, 363
BshNI	GGYRCC	1 cut(s)	566
BshVI	ATCGAT	1 cut(s)	320
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	7 cut(s)	22, 133, 165, 210, 307, 485, 536
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	4 cut(s)	39, 209, 292, 429
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	476
BsmI	GAATGC	2 cut(s)	146, 597
BsnI	GGCC	2 cut(s)	120, 363
Bsp1286I	GDGCHC	2 cut(s)	306, 554
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	321, 405, 893
BspACI	CCGC	5 cut(s)	230, 252, 268, 416, 570
BspANI	GGCC	2 cut(s)	120, 363
BspCNI	CTCAG	1 cut(s)	255
BspDI	ATCGAT	1 cut(s)	320
BspEI	TCCGGA	1 cut(s)	21
BspFNI	CGCG	4 cut(s)	138, 230, 254, 416
BspLI	GGNNCC	5 cut(s)	149, 480, 489, 553, 568
BspT107I	GGYRCC	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	364, 646
BssMI	GATC	3 cut(s)	321, 405, 893
BssNI	GRCGYC	3 cut(s)	279, 465, 567
Bst2UI	CCWGG	2 cut(s)	152, 365
Bst4CI	ACNGT	3 cut(s)	442, 531, 805
BstACI	GRCGYC	3 cut(s)	279, 465, 567
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	161, 599
BstFNI	CGCG	4 cut(s)	138, 230, 254, 416
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	2 cut(s)	138, 569
BstKTI	GATC	3 cut(s)	324, 408, 896
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	3 cut(s)	321, 405, 893
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 558, 632, 827, 863
BstNI	CCWGG	2 cut(s)	152, 365
BstNSI	RCATGY	2 cut(s)	583, 839
BstSCI	CCNGG	5 cut(s)	131, 150, 164, 306, 363
BstSFI	CTRYAG	1 cut(s)	527
BstUI	CGCG	4 cut(s)	138, 230, 254, 416
BstV1I	GCAGC	4 cut(s)	644, 722, 839, 866
BstX2I	RGATCY	1 cut(s)	893
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	893
Bsu15I	ATCGAT	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	120, 363
BsuTUI	ATCGAT	1 cut(s)	320
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	161, 599
CaiI	CAGNNNCTG	1 cut(s)	298
CfoI	GCGC	2 cut(s)	138, 569
Cfr13I	GGNCC	1 cut(s)	479
ClaI	ATCGAT	1 cut(s)	320
CseI	GACGC	3 cut(s)	34, 287, 473
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	4 cut(s)	176, 359, 580, 836
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	263
DinI	GGCGCC	1 cut(s)	568
DpnI	GATC	3 cut(s)	323, 407, 895
DpnII	GATC	3 cut(s)	321, 405, 893
DriI	GACNNNNNGTC	2 cut(s)	224, 430
Eam1105I	GACNNNNNGTC	2 cut(s)	224, 430
Eco147I	AGGCCT	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	554
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	150, 363
EcoRV	GATATC	1 cut(s)	391
EcoT22I	ATGCAT	1 cut(s)	599
EcoT38I	GRGCYC	1 cut(s)	554
EgeI	GGCGCC	1 cut(s)	568
EheI	GGCGCC	1 cut(s)	568
FaeI	CATG	4 cut(s)	179, 362, 583, 839
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	4 cut(s)	175, 358, 579, 835
FblI	GTMKAC	3 cut(s)	57, 237, 576
Fnu4HI	GCNGC	6 cut(s)	252, 570, 633, 711, 828, 855
FokI	GGATG	2 cut(s)	148, 606
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	6 cut(s)	252, 570, 633, 711, 828, 855
FspBI	CTAG	1 cut(s)	967
GlaI	GCGC	2 cut(s)	137, 568
GluI	GCNGC	6 cut(s)	252, 570, 633, 711, 828, 855
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	2 cut(s)	120, 363
HapII	CCGG	7 cut(s)	22, 133, 165, 210, 307, 485, 536
HgaI	GACGC	3 cut(s)	34, 287, 473
HhaI	GCGC	2 cut(s)	138, 569
Hin1I	GRCGYC	3 cut(s)	279, 465, 567
Hin1II	CATG	4 cut(s)	179, 362, 583, 839
Hin6I	GCGC	2 cut(s)	136, 567
HinP1I	GCGC	2 cut(s)	136, 567
HincII	GTYRAC	2 cut(s)	438, 577
HindII	GTYRAC	2 cut(s)	438, 577
HinfI	GANTC	3 cut(s)	219, 518, 701
HpaII	CCGG	7 cut(s)	22, 133, 165, 210, 307, 485, 536
HphI	GGTGA	3 cut(s)	224, 374, 527
Hpy166II	GTNNAC	5 cut(s)	58, 238, 438, 482, 577
Hpy188I	TCNGA	5 cut(s)	114, 264, 501, 593, 960
Hpy188III	TCNNGA	5 cut(s)	22, 184, 202, 337, 445
Hpy8I	GTNNAC	5 cut(s)	58, 238, 438, 482, 577
Hpy99I	CGWCG	3 cut(s)	230, 416, 578
HpyAV	CCTTC	2 cut(s)	334, 465
HpyCH4III	ACNGT	3 cut(s)	442, 531, 805
HpyCH4IV	ACGT	2 cut(s)	16, 640
HpyCH4V	TGCA	3 cut(s)	597, 671, 749
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 558, 632, 827, 863
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	2 cut(s)	16, 640
Hsp92I	GRCGYC	3 cut(s)	279, 465, 567
Hsp92II	CATG	4 cut(s)	179, 362, 583, 839
HspAI	GCGC	2 cut(s)	136, 567
KasI	GGCGCC	1 cut(s)	566
Kpn2I	TCCGGA	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	321, 405, 893
LmnI	GCTCC	9 cut(s)	309, 538, 557, 629, 680, 770, 788, 824, 881
Lsp1109I	GCAGC	4 cut(s)	644, 722, 839, 866
LweI	GCATC	1 cut(s)	584
MaeI	CTAG	1 cut(s)	967
MaeII	ACGT	2 cut(s)	16, 640
MaeIII	GTNAC	2 cut(s)	493, 799
MalI	GATC	3 cut(s)	323, 407, 895
MboI	GATC	3 cut(s)	321, 405, 893
MflI	RGATCY	1 cut(s)	893
MhlI	GDGCHC	2 cut(s)	306, 554
MluCI	AATT	4 cut(s)	104, 902, 907, 954
Mly113I	GGCGCC	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	9 cut(s)	36, 60, 110, 187, 258, 656, 707, 734, 851
Mph1103I	ATGCAT	1 cut(s)	599
MroI	TCCGGA	1 cut(s)	21
MseI	TTAA	1 cut(s)	917
MspA1I	CMGCKG	2 cut(s)	635, 713
MspI	CCGG	7 cut(s)	22, 133, 165, 210, 307, 485, 536
MspR9I	CCNGG	5 cut(s)	133, 152, 166, 308, 365
Mva1269I	GAATGC	2 cut(s)	146, 597
MvaI	CCWGG	2 cut(s)	152, 365
MvnI	CGCG	4 cut(s)	138, 230, 254, 416
MwoI	GCNNNNNNNGC	5 cut(s)	251, 558, 632, 827, 863
NarI	GGCGCC	1 cut(s)	567
NciI	CCSGG	3 cut(s)	133, 166, 308
NdeII	GATC	3 cut(s)	321, 405, 893
NlaIII	CATG	4 cut(s)	179, 362, 583, 839
NlaIV	GGNNCC	5 cut(s)	149, 480, 489, 553, 568
NmuCI	GTSAC	1 cut(s)	493
NsiI	ATGCAT	1 cut(s)	599
NspI	RCATGY	2 cut(s)	583, 839
PceI	AGGCCT	1 cut(s)	120
PciI	ACATGT	2 cut(s)	579, 835
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 420, 570
PctI	GAATGC	2 cut(s)	146, 597
PfeI	GAWTC	2 cut(s)	518, 701
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	6 cut(s)	253, 571, 634, 712, 829, 856
PleI	GAGTC	1 cut(s)	213
PluTI	GGCGCC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	213
PscI	ACATGT	2 cut(s)	579, 835
Psp6I	CCWGG	2 cut(s)	150, 363
PspGI	CCWGG	2 cut(s)	150, 363
PspN4I	GGNNCC	5 cut(s)	149, 480, 489, 553, 568
PspPI	GGNCC	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	893
PvuII	CAGCTG	2 cut(s)	635, 713
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SalI	GTCGAC	1 cut(s)	575
SaqAI	TTAA	1 cut(s)	917
SatI	GCNGC	6 cut(s)	252, 570, 633, 711, 828, 855
Sau3AI	GATC	3 cut(s)	321, 405, 893
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	5 cut(s)	133, 152, 166, 308, 365
SduI	GDGCHC	2 cut(s)	306, 554
SfaNI	GCATC	1 cut(s)	584
SfcI	CTRYAG	1 cut(s)	527
SfoI	GGCGCC	1 cut(s)	568
SinI	GGWCC	1 cut(s)	479
Sse9I	AATT	4 cut(s)	104, 902, 907, 954
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	5 cut(s)	230, 252, 268, 416, 570
SspDI	GGCGCC	1 cut(s)	566
SspMI	CTAG	1 cut(s)	967
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	5 cut(s)	131, 150, 164, 306, 363
TaaI	ACNGT	3 cut(s)	442, 531, 805
TaiI	ACGT	2 cut(s)	19, 643
TaqI	TCGA	4 cut(s)	320, 508, 576, 699
TasI	AATT	4 cut(s)	104, 902, 907, 954
TauI	GCSGC	2 cut(s)	254, 572
TfiI	GAWTC	2 cut(s)	518, 701
Tru1I	TTAA	1 cut(s)	917
Tru9I	TTAA	1 cut(s)	917
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	4 cut(s)	632, 710, 827, 854
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	5 cut(s)	17, 82, 732, 849, 916
TspGWI	ACGGA	2 cut(s)	52, 833
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	3 cut(s)	104, 902, 954
XceI	RCATGY	2 cut(s)	583, 839
XmiI	GTMKAC	3 cut(s)	57, 237, 576
XspI	CTAG	1 cut(s)	967
Zsp2I	ATGCAT	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.