Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004831

Physical Location & Seq

Genomic Coordinates Reverse (-)

25599371 .. 25600494

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0271000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGAAACCTTCATAATTTGGTTGAGCTCTTTATCGATACCAACCACTTAACAAGTTCCATCCCTCCAAATTTTGGAAATTTCCAAGAGCTCACTGTGATGGCATTGTGGAACAATAATCTTTCTGGTTCTATCCCTACAGAACTAGGAAATCTAAAGTCTTTGATTAAACTATACATTGACCTGAACAATTATTCTGGTTCAATCCCGGCATCCTTAGGGAACTTGAGAAACTTAGAAATCTTATACCTCCGTGACAACCAACTTTCAGGCTCCATCCCCAAAGAGATAGAGAATCTCATGAAGTTGACTGGTCCAATCCCCAAAAGCTTGAAAACTTGCAAGAGCTTATTCAGACTTCGTCTCCAATGGAACCAACTCACAGGCAATATATCTGAAGACTTTGGTGTCTATCCTCATCTTCAATTTATAGACCTAAGCCACAATAACTTCTATAGTGAAGTCTCACACACTTGGGGACAATGTCCACATTTAGAAACCCTTCGAATTGCGGGAAACAACCTTACTGGTAGCATACCACCTGAGATCAGCAATGCATCTCAAATTCATGAACTCAATCTTTCTTCAAACAGGTTAGTCGGTGCGATTCCAAAGGAGTTTGGGAGAATGACTTCTTTGGTGAAGCTGGTGTTGAATGACAATCAACTGTGGGATCATATACCCTCAGAGTTTGGATCATTGAATAATCTTGAATACCTTGACCAGTCCACTAACAAATTCAATGAGTCAATTCCAAGCAGTATAGGTAACTTATTCAGATTAAACTACATGAATTTGAGCAACAACAAGTTGAGTCATGAGATTCCGTTTCAGTTGGGGAAGTTAGTTCACTTGAGAATAAGATACCATCAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

292

Amino Acids

33.07

Weight (kDa)

6.59

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	21 - 103	1.7e-07	Leucine-rich repeat region
LRR_14	PF23598	111 - 250	2.2e-07	Leucine-rich repeat region
LRR_8	PF13855	139 - 199	7.2e-06	Leucine rich repeat
LRR_8	PF13855	163 - 223	2.7e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01850
malus_domestica	MD02G1016500.v1.1 MD15G1161000.v1.1
prunus_persica	Prupe.7G256200_v2.0.a1
pyrus_communis	pycom02g01460
rosa_chinensis	RchiOBHm_Chr2g0086821
rosa_laevigata	RLG00000015799 RLG00000015800 RLG00000015805 RLG00000015806
rosa_multiflora	Rmu_sc0010698.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154110 Rroxscaffold_2G00154130
rosa_rugosa	Rorug01G0469800 Rorug01G0469900 Rorug01G0470000 Rorug07G0271000
rosa_samantha	Rh2AG022600 Rh2AG024500 Rh2AG024600 Rh2AG024800 Rh2BG022800 Rh2BG023100 Rh2CG023500 Rh2CG023600 Rh2CG025100 Rh2DG023000 Rh2DG025000 Rh2DG025100
rosa_wichuraiana	Rw2G001790 Rw2G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	407
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	2 cut(s)	681, 703
AcsI	RAATTY	5 cut(s)	70, 79, 564, 737, 793
AcuI	CTGAAG	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	8 cut(s)	204, 334, 425, 588, 655, 703, 713, 742
AluBI	AGCT	5 cut(s)	28, 91, 330, 348, 646
AluI	AGCT	5 cut(s)	28, 91, 330, 348, 646
Alw21I	GWGCWC	2 cut(s)	30, 93
Alw26I	GTCTC	2 cut(s)	368, 469
AlwI	GGATC	2 cut(s)	681, 703
ApoI	RAATTY	5 cut(s)	70, 79, 564, 737, 793
Asp700I	GAANNNNTTC	2 cut(s)	501, 631
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	652
AsuII	TTCGAA	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	314
AxyI	CCTNAGG	1 cut(s)	217
BanII	GRGCYC	2 cut(s)	30, 93
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	2 cut(s)	30, 93
BccI	CCATC	4 cut(s)	68, 94, 284, 876
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	368, 469
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	2 cut(s)	138, 454
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	274, 374
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	2 cut(s)	221, 566
BpiI	GAAGAC	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	437
Bpu14I	TTCGAA	1 cut(s)	505
BpuEI	CTTGAG	2 cut(s)	247, 874
BpuMI	CCSGG	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	3 cut(s)	316, 532, 724
Bse21I	CCTNAGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	559
BseCI	ATCGAT	1 cut(s)	36
BseGI	GGATG	3 cut(s)	60, 212, 276
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	2 cut(s)	534, 699
BseNI	ACTGG	3 cut(s)	316, 532, 724
BshVI	ATCGAT	1 cut(s)	36
BsiHKAI	GWGCWC	2 cut(s)	30, 93
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	368, 469
BsmBI	CGTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	492
Bsp119I	TTCGAA	1 cut(s)	505
Bsp1286I	GDGCHC	2 cut(s)	30, 93
Bsp143I	GATC	3 cut(s)	546, 673, 695
BspACI	CCGC	1 cut(s)	512
BspCNI	CTCAG	2 cut(s)	535, 698
BspDI	ATCGAT	1 cut(s)	36
BspHI	TCATGA	3 cut(s)	300, 568, 817
BspLI	GGNNCC	2 cut(s)	274, 374
BspPI	GGATC	2 cut(s)	681, 703
BspT104I	TTCGAA	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	559
BsrI	ACTGG	3 cut(s)	316, 532, 724
BssMI	GATC	3 cut(s)	546, 673, 695
Bst4CI	ACNGT	2 cut(s)	97, 669
BstBI	TTCGAA	1 cut(s)	505
BstDEI	CTNAG	5 cut(s)	217, 235, 437, 543, 685
BstF5I	GGATG	3 cut(s)	60, 212, 276
BstKTI	GATC	3 cut(s)	549, 676, 698
BstMAI	GTCTC	2 cut(s)	368, 469
BstMBI	GATC	3 cut(s)	546, 673, 695
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	2 cut(s)	138, 454
BstV2I	GAAGAC	1 cut(s)	405
Bsu15I	ATCGAT	1 cut(s)	36
Bsu36I	CCTNAGG	1 cut(s)	217
BsuTUI	ATCGAT	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	60, 212, 276
BtsIMutI	CAGTG	1 cut(s)	93
CciI	TCATGA	3 cut(s)	300, 568, 817
Cfr13I	GGNCC	1 cut(s)	314
ClaI	ATCGAT	1 cut(s)	36
CviAII	CATG	4 cut(s)	301, 569, 790, 818
CviJI	RGCY	7 cut(s)	28, 91, 273, 330, 348, 441, 646
CviKI_1	RGCY	7 cut(s)	28, 91, 273, 330, 348, 441, 646
DdeI	CTNAG	5 cut(s)	217, 235, 437, 543, 685
DpnI	GATC	3 cut(s)	548, 675, 697
DpnII	GATC	3 cut(s)	546, 673, 695
DrdI	GACNNNNNNGTC	1 cut(s)	407
DseDI	GACNNNNNNGTC	1 cut(s)	407
Ecl136II	GAGCTC	2 cut(s)	28, 91
Eco24I	GRGCYC	2 cut(s)	30, 93
Eco47I	GGWCC	1 cut(s)	314
Eco53kI	GAGCTC	2 cut(s)	28, 91
Eco57I	CTGAAG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	217
EcoICRI	GAGCTC	2 cut(s)	28, 91
EcoT22I	ATGCAT	1 cut(s)	559
EcoT38I	GRGCYC	2 cut(s)	30, 93
Esp3I	CGTCTC	1 cut(s)	368
FaeI	CATG	4 cut(s)	304, 572, 793, 821
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	4 cut(s)	300, 568, 789, 817
FauI	CCCGC	1 cut(s)	505
FokI	GGATG	3 cut(s)	47, 199, 263
FriOI	GRGCYC	2 cut(s)	30, 93
FspBI	CTAG	1 cut(s)	146
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	4 cut(s)	304, 572, 793, 821
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	5 cut(s)	295, 607, 746, 814, 823
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	652
Hpy166II	GTNNAC	4 cut(s)	309, 488, 729, 850
Hpy188I	TCNGA	5 cut(s)	356, 397, 688, 779, 873
Hpy188III	TCNNGA	4 cut(s)	301, 569, 710, 818
Hpy8I	GTNNAC	4 cut(s)	309, 488, 729, 850
HpyAV	CCTTC	2 cut(s)	20, 512
HpyCH4III	ACNGT	2 cut(s)	97, 669
HpyCH4V	TGCA	2 cut(s)	342, 557
HpyF3I	CTNAG	5 cut(s)	217, 235, 437, 543, 685
Hsp92II	CATG	4 cut(s)	304, 572, 793, 821
Kzo9I	GATC	3 cut(s)	546, 673, 695
LmnI	GCTCC	1 cut(s)	278
LweI	GCATC	2 cut(s)	221, 566
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	254, 767
MalI	GATC	3 cut(s)	548, 675, 697
MboI	GATC	3 cut(s)	546, 673, 695
MboII	GAAGA	3 cut(s)	410, 413, 576
MhlI	GDGCHC	2 cut(s)	30, 93
MlyI	GAGTC	2 cut(s)	755, 823
MnlI	CCTC	4 cut(s)	75, 260, 426, 694
Mph1103I	ATGCAT	1 cut(s)	559
MroXI	GAANNNNTTC	2 cut(s)	501, 631
MseI	TTAA	3 cut(s)	50, 168, 782
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	209
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	3 cut(s)	546, 673, 695
NlaIII	CATG	4 cut(s)	304, 572, 793, 821
NlaIV	GGNNCC	2 cut(s)	274, 374
NmuCI	GTSAC	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	559
NspV	TTCGAA	1 cut(s)	505
PagI	TCATGA	3 cut(s)	300, 568, 817
PdmI	GAANNNNTTC	2 cut(s)	501, 631
PfeI	GAWTC	3 cut(s)	295, 607, 823
PflFI	GACNNNGTC	2 cut(s)	360, 483
PflMI	CCANNNNNTGG	1 cut(s)	74
PleI	GAGTC	2 cut(s)	754, 822
PpsI	GAGTC	2 cut(s)	754, 822
Psp124BI	GAGCTC	2 cut(s)	30, 93
PspN4I	GGNNCC	2 cut(s)	274, 374
PspPI	GGNCC	1 cut(s)	314
PsyI	GACNNNGTC	2 cut(s)	360, 483
RseI	CAYNNNNRTG	1 cut(s)	98
SacI	GAGCTC	2 cut(s)	30, 93
SaqAI	TTAA	3 cut(s)	50, 168, 782
Sau3AI	GATC	3 cut(s)	546, 673, 695
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	2 cut(s)	755, 823
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	30, 93
SfaNI	GCATC	2 cut(s)	221, 566
SfcI	CTRYAG	2 cut(s)	138, 454
SfuI	TTCGAA	1 cut(s)	505
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	226, 853
SmoI	CTYRAG	2 cut(s)	226, 853
SsiI	CCGC	1 cut(s)	512
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	2 cut(s)	30, 93
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	97, 669
TaqI	TCGA	2 cut(s)	36, 505
TfiI	GAWTC	3 cut(s)	295, 607, 823
Tru1I	TTAA	3 cut(s)	50, 168, 782
Tru9I	TTAA	3 cut(s)	50, 168, 782
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	317, 557, 585, 806
TspGWI	ACGGA	2 cut(s)	242, 816
TspRI	CASTG	1 cut(s)	100
Tth111I	GACNNNGTC	2 cut(s)	360, 483
Van91I	CCANNNNNTGG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	5 cut(s)	70, 79, 564, 737, 793
XmnI	GAANNNNTTC	2 cut(s)	501, 631
XspI	CTAG	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.