Rh2AG024500

RING-H2 zinc finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004831
Physical Location & Seq
Reverse (-)
1723373 .. 1731118
7746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG024500.1

Sequence Viewer

Length: 972 bp
ATGGAAATTGCACCACATTTGCTTTTCGGATCCACTCCTCTTTGCCGATTCTCTCTTTCTCAAGGTCTTTTTGGGGTGCCTTCAAATCTTTTCCGGTCTGTAATGCCTGCCATTCAGCTTCCCCACACAAGCGGAGATTCAATGTCTCAAATGGAAGACGCTCCTGCTACTTTTGATGATAGTGGATTCCCTAGTGAGAACCAAATAATTGATATATGGAGGCAACTTCTCATGGAATCGACTCTATATATACACAGGCCGGCTGATAACTTGCTAGAAGGTTCAAGTTCCGTCTTTAGGGTAACGGCTGACAATGGATCAGTGGACTTCAGACTTGTAACAGAGAACGCTGAAGTTGTTAACCAATCACTAGTGTACTTTTCAATTGAAATGCGCAATCGCTTTGGAGGGATGAGGCTTGATGTGGATAACGTGTCATATGAGGAGCTATTGGCTTTAGAAGATCATATAGGGTATGTCAGCACAGGGTTATCCGAGGAAGCAGCCGTTGCATCTCTCAAACGCAGTAGTTATTTTCTGCTTGCTGATGAAAATGCTCCTAAAGAGTTTTGCAGCATCTGCCAGGAGGATTTTATAGAGGAAGATGAGCTAGGAACATTGGATTGCGGACACAGCTTCCACAATTCCGAGTTGGCAGATAGGGGCAGGGTTTTGTTCCCTGGAATGAACCTTATTGATTCAAACAGGACTCTAATTCAACCCAGGGAGCAGGATACCGAGACACAGTATCTAGGTCAGCTATACAAGATGAACGTCCTTATTGATGTAGCTGGCTTTCTGTACTGGGAGACTGTCCCTCGGTTTCGCAGAGCCAACCTCCTCCGACGTTTCCCGATGCTTGGTGTTTCTGGCAATCGGCTCCTGGCGCGTTTGTTGAGCTACTCTTCAGTAGAAAGGCTGTCAGCTGCTGCCGCGATTGGGCACTACTTTTTCGAGGAACTGCACCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

323

Amino Acids

36.37

Weight (kDa)

4.72

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_11 PF17123 191 - 214 5.5e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 76
AccII CGCG 2 cut(s) 889, 935
AciI CCGC 3 cut(s) 132, 627, 933
AclWI GGATC 3 cut(s) 24, 37, 325
AcuI CTGAAG 3 cut(s) 313, 372, 891
AfaI GTAC 2 cut(s) 377, 803
AfiI CCNNNNNNNGG 3 cut(s) 297, 860, 939
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 7 cut(s) 84, 141, 285, 384, 389, 702, 719
AhlI ACTAGT 1 cut(s) 370
AjnI CCWGG 4 cut(s) 582, 679, 722, 882
AluBI AGCT 8 cut(s) 118, 448, 610, 636, 760, 791, 900, 926
AluI AGCT 8 cut(s) 118, 448, 610, 636, 760, 791, 900, 926
Alw26I GTCTC 3 cut(s) 150, 734, 803
AlwI GGATC 3 cut(s) 24, 37, 325
AlwNI CAGNNNCTG 2 cut(s) 579, 929
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 4 cut(s) 503, 573, 926, 929
AspLEI GCGC 2 cut(s) 396, 889
BaeGI GKGCMC 1 cut(s) 945
BamHI GGATCC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 4 cut(s) 515, 585, 913, 916
BceAI ACGGC 2 cut(s) 321, 491
BciT130I CCWGG 4 cut(s) 584, 681, 724, 884
BciVI GTATCC 1 cut(s) 727
BcoDI GTCTC 3 cut(s) 150, 734, 803
BcuI ACTAGT 1 cut(s) 370
BfaI CTAG 5 cut(s) 192, 275, 371, 611, 752
BfuI GTATCC 1 cut(s) 727
BisI GCNGC 5 cut(s) 504, 574, 927, 930, 933
BlsI GCNGC 5 cut(s) 505, 575, 928, 931, 934
Bme1390I CCNGG 4 cut(s) 584, 681, 724, 884
BmiI GGNNCC 3 cut(s) 31, 78, 881
BmrFI CCNGG 4 cut(s) 584, 681, 724, 884
BmrI ACTGGG 1 cut(s) 814
BmsI GCATC 3 cut(s) 521, 585, 846
BmuI ACTGGG 1 cut(s) 814
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 822, 854
BpuEI CTTGAG 1 cut(s) 45
BsaJI CCNNGG 5 cut(s) 495, 679, 722, 723, 818
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 3 cut(s) 297, 860, 939
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 809
BseBI CCWGG 4 cut(s) 584, 681, 724, 884
BseDI CCNNGG 5 cut(s) 495, 679, 722, 723, 818
BseGI GGATG 1 cut(s) 417
BseLI CCNNNNNNNGG 3 cut(s) 297, 860, 939
BseNI ACTGG 1 cut(s) 809
BseRI GAGGAG 3 cut(s) 27, 458, 830
BseSI GKGCMC 1 cut(s) 945
BseXI GCAGC 4 cut(s) 515, 585, 913, 916
BsgI GTGCAG 1 cut(s) 947
Bsh1236I CGCG 2 cut(s) 889, 935
BshFI GGCC 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 76
BsiSI CCGG 2 cut(s) 94, 260
BslFI GGGAC 1 cut(s) 800
BslI CCNNNNNNNGG 3 cut(s) 297, 860, 939
BsmAI GTCTC 3 cut(s) 150, 734, 803
BsmFI GGGAC 1 cut(s) 800
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 945
Bsp143I GATC 3 cut(s) 29, 317, 463
BspACI CCGC 3 cut(s) 132, 627, 933
BspANI GGCC 1 cut(s) 259
BspFNI CGCG 2 cut(s) 889, 935
BspLI GGNNCC 3 cut(s) 31, 78, 881
BspPI GGATC 3 cut(s) 24, 37, 325
BspT107I GGYRCC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 1 cut(s) 809
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 5 cut(s) 495, 679, 722, 723, 818
BssMI GATC 3 cut(s) 29, 317, 463
Bst2UI CCWGG 4 cut(s) 584, 681, 724, 884
Bst4CI ACNGT 2 cut(s) 747, 814
Bst6I CTCTTC 1 cut(s) 910
BstAPI GCANNNNNTGC 2 cut(s) 509, 579
BstC8I GCNNGC 4 cut(s) 108, 261, 543, 793
BstF5I GGATG 1 cut(s) 417
BstFNI CGCG 2 cut(s) 889, 935
BstHHI GCGC 2 cut(s) 396, 889
BstKTI GATC 3 cut(s) 32, 320, 466
BstMAI GTCTC 3 cut(s) 150, 734, 803
BstMBI GATC 3 cut(s) 29, 317, 463
BstMWI GCNNNNNNNGC 5 cut(s) 509, 579, 633, 886, 932
BstNI CCWGG 4 cut(s) 584, 681, 724, 884
BstSCI CCNGG 4 cut(s) 582, 679, 722, 882
BstSLI GKGCMC 1 cut(s) 945
BstUI CGCG 2 cut(s) 889, 935
BstV1I GCAGC 4 cut(s) 515, 585, 913, 916
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BsuI GTATCC 1 cut(s) 727
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 4 cut(s) 108, 261, 543, 793
CaiI CAGNNNCTG 2 cut(s) 579, 929
CfoI GCGC 2 cut(s) 396, 889
Cfr10I RCCGGY 1 cut(s) 259
CseI GACGC 1 cut(s) 167
Csp6I GTAC 2 cut(s) 376, 802
CviAII CATG 1 cut(s) 232
CviQI GTAC 2 cut(s) 376, 802
DpnI GATC 3 cut(s) 31, 319, 465
DpnII GATC 3 cut(s) 29, 317, 463
Eam1104I CTCTTC 1 cut(s) 910
EarI CTCTTC 1 cut(s) 910
Eco57I CTGAAG 3 cut(s) 313, 372, 891
EcoRII CCWGG 4 cut(s) 582, 679, 722, 882
FaeI CATG 1 cut(s) 235
FaqI GGGAC 1 cut(s) 800
FatI CATG 1 cut(s) 231
FauNDI CATATG 1 cut(s) 439
Fnu4HI GCNGC 5 cut(s) 504, 574, 927, 930, 933
FokI GGATG 1 cut(s) 424
Fsp4HI GCNGC 5 cut(s) 504, 574, 927, 930, 933
FspBI CTAG 5 cut(s) 192, 275, 371, 611, 752
FspI TGCGCA 1 cut(s) 395
GlaI GCGC 2 cut(s) 395, 888
GluI GCNGC 5 cut(s) 504, 574, 927, 930, 933
HaeIII GGCC 1 cut(s) 259
HapII CCGG 2 cut(s) 94, 260
HgaI GACGC 1 cut(s) 167
HhaI GCGC 2 cut(s) 396, 889
Hin1II CATG 1 cut(s) 235
Hin6I GCGC 2 cut(s) 394, 887
HinP1I GCGC 2 cut(s) 394, 887
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 7 cut(s) 48, 137, 186, 236, 241, 698, 709
HpaI GTTAAC 1 cut(s) 361
HpaII CCGG 2 cut(s) 94, 260
Hpy166II GTNNAC 3 cut(s) 325, 361, 376
Hpy188I TCNGA 5 cut(s) 29, 332, 496, 649, 845
Hpy188III TCNNGA 1 cut(s) 853
Hpy8I GTNNAC 3 cut(s) 325, 361, 376
Hpy99I CGWCG 1 cut(s) 849
HpyAV CCTTC 2 cut(s) 90, 272
HpyCH4III ACNGT 2 cut(s) 747, 814
HpyCH4IV ACGT 3 cut(s) 432, 774, 847
HpyCH4V TGCA 4 cut(s) 11, 512, 573, 964
HpyF10VI GCNNNNNNNGC 5 cut(s) 509, 579, 633, 886, 932
HpySE526I ACGT 3 cut(s) 432, 774, 847
Hsp92II CATG 1 cut(s) 235
HspAI GCGC 2 cut(s) 394, 887
KroI GCCGGC 1 cut(s) 259
KroNI GCCGGC 1 cut(s) 261
KspAI GTTAAC 1 cut(s) 361
Kzo9I GATC 3 cut(s) 29, 317, 463
LmnI GCTCC 5 cut(s) 166, 445, 562, 727, 885
Lsp1109I GCAGC 4 cut(s) 515, 585, 913, 916
LweI GCATC 3 cut(s) 521, 585, 846
MaeI CTAG 5 cut(s) 192, 275, 371, 611, 752
MaeII ACGT 3 cut(s) 432, 774, 847
MaeIII GTNAC 2 cut(s) 301, 337
MalI GATC 3 cut(s) 31, 319, 465
MboI GATC 3 cut(s) 29, 317, 463
MboII GAAGA 4 cut(s) 167, 473, 614, 897
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 945
MluCI AATT 5 cut(s) 6, 207, 384, 643, 714
MlyI GAGTC 2 cut(s) 235, 703
MmeI TCCRAC 1 cut(s) 868
MroNI GCCGGC 1 cut(s) 259
MseI TTAA 2 cut(s) 360, 970
MspA1I CMGCKG 1 cut(s) 926
MspI CCGG 2 cut(s) 94, 260
MspR9I CCNGG 4 cut(s) 584, 681, 724, 884
MunI CAATTG 1 cut(s) 384
MvaI CCWGG 4 cut(s) 584, 681, 724, 884
MvnI CGCG 2 cut(s) 889, 935
MwoI GCNNNNNNNGC 5 cut(s) 509, 579, 633, 886, 932
NaeI GCCGGC 1 cut(s) 261
NdeI CATATG 1 cut(s) 439
NdeII GATC 3 cut(s) 29, 317, 463
NgoMIV GCCGGC 1 cut(s) 259
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 3 cut(s) 31, 78, 881
NsbI TGCGCA 1 cut(s) 395
PasI CCCWGGG 1 cut(s) 723
PdiI GCCGGC 1 cut(s) 261
PfeI GAWTC 5 cut(s) 48, 137, 186, 236, 698
PkrI GCNGC 5 cut(s) 505, 575, 928, 931, 934
PleI GAGTC 2 cut(s) 235, 703
PpsI GAGTC 2 cut(s) 235, 703
Psp6I CCWGG 4 cut(s) 582, 679, 722, 882
PspGI CCWGG 4 cut(s) 582, 679, 722, 882
PspN4I GGNNCC 3 cut(s) 31, 78, 881
PstNI CAGNNNCTG 2 cut(s) 579, 929
PsuI RGATCY 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 2 cut(s) 377, 803
RsaNI GTAC 2 cut(s) 376, 802
SaqAI TTAA 2 cut(s) 360, 970
SatI GCNGC 5 cut(s) 504, 574, 927, 930, 933
Sau3AI GATC 3 cut(s) 29, 317, 463
SchI GAGTC 2 cut(s) 235, 703
ScrFI CCNGG 4 cut(s) 584, 681, 724, 884
SduI GDGCHC 1 cut(s) 945
SfaNI GCATC 3 cut(s) 521, 585, 846
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
SpeI ACTAGT 1 cut(s) 370
Sse9I AATT 5 cut(s) 6, 207, 384, 643, 714
SsiI CCGC 3 cut(s) 132, 627, 933
SspMI CTAG 5 cut(s) 192, 275, 371, 611, 752
StyD4I CCNGG 4 cut(s) 582, 679, 722, 882
TaaI ACNGT 2 cut(s) 747, 814
TaiI ACGT 3 cut(s) 435, 777, 850
TaqI TCGA 2 cut(s) 239, 954
TasI AATT 5 cut(s) 6, 207, 384, 643, 714
TatI WGTACW 2 cut(s) 375, 801
TauI GCSGC 1 cut(s) 935
TfiI GAWTC 5 cut(s) 48, 137, 186, 236, 698
Tru1I TTAA 2 cut(s) 360, 970
Tru9I TTAA 2 cut(s) 360, 970
TscAI CASTG 1 cut(s) 327
TseI GCWGC 4 cut(s) 503, 573, 926, 929
TspDTI ATGAA 3 cut(s) 564, 701, 785
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 1 cut(s) 327
XspI CTAG 5 cut(s) 192, 275, 371, 611, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.