Rh2DG025100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004831
Physical Location & Seq
Reverse (-)
1482543 .. 1483048
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG025100.1

Sequence Viewer

Length: 354 bp
ATGCGTGGGACTTGTTCCAATGTCGATGATTCCCCTCAAGAACAACCATCTGAGCAGCCAATAATTTGTGAGCGTTCCAATGAGGAAAATTGTGAATGTAGTAGAGGGATGAGTTCTGCTGCACATTTTATAAAACACCTTCCGGGTGAAAGTCAAGGGCCTCAGCTGAATAATGCCGGTATTGGATTGCTTGCCAATTTTGAATCCGAGAGTGTCAATGGCCATCTTTTACCTCATCCTCTACAAGTTGGTTGTGACCCAATTTGTGGAAGCAATAGGCCTCAAACGTTCATAGATTTTCAATGCCATGGCATTGAATTTATGCTTAGCACAATGTTTGCTTGGGTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.8

Weight (kDa)

4.72

Isoelectric Point (pI)

60.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 266
AclI AACGTT 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 3 cut(s) 203, 302, 317
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AoxI GGCC 3 cut(s) 158, 220, 278
ApeKI GCWGC 2 cut(s) 55, 119
ApoI RAATTY 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 158
BalI TGGCCA 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 67, 106
BccI CCATC 2 cut(s) 55, 231
BcnI CCSGG 1 cut(s) 144
BisI GCNGC 2 cut(s) 56, 120
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 2 cut(s) 57, 121
Bme1390I CCNGG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 307
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 2 cut(s) 114, 235
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMII CTCAG 2 cut(s) 42, 176
BseXI GCAGC 2 cut(s) 67, 106
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 3 cut(s) 160, 222, 280
BsiSI CCGG 2 cut(s) 143, 177
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 3 cut(s) 160, 222, 280
Bsp1720I GCTNAGC 1 cut(s) 326
Bsp19I CCATGG 1 cut(s) 307
BspANI GGCC 3 cut(s) 160, 222, 280
BspCNI CTCAG 2 cut(s) 43, 175
BspLI GGNNCC 1 cut(s) 348
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 3 cut(s) 51, 162, 326
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 2 cut(s) 114, 235
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 67, 106
BsuRI GGCC 3 cut(s) 160, 222, 280
BtgI CCRYGG 1 cut(s) 307
BtsCI GGATG 2 cut(s) 114, 235
Cac8I GCNNGC 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 158
CviAII CATG 2 cut(s) 308, 351
CviJI RGCY 5 cut(s) 58, 160, 166, 222, 280
CviKI_1 RGCY 5 cut(s) 58, 160, 166, 222, 280
DdeI CTNAG 3 cut(s) 51, 162, 326
EaeI YGGCCR 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 307
Eco147I AGGCCT 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 2 cut(s) 311, 354
FaiI YATR 5 cut(s) 131, 293, 309, 323, 352
FaqI GGGAC 1 cut(s) 22
FatI CATG 2 cut(s) 307, 350
Fnu4HI GCNGC 2 cut(s) 56, 120
FokI GGATG 2 cut(s) 121, 222
Fsp4HI GCNGC 2 cut(s) 56, 120
GluI GCNGC 2 cut(s) 56, 120
HaeIII GGCC 3 cut(s) 160, 222, 280
HapII CCGG 2 cut(s) 143, 177
Hin1II CATG 2 cut(s) 311, 354
HinfI GANTC 2 cut(s) 29, 203
HpaII CCGG 2 cut(s) 143, 177
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 52, 208
Hpy188III TCNNGA 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 1 cut(s) 122
HpyF3I CTNAG 3 cut(s) 51, 162, 326
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 2 cut(s) 311, 354
LpnPI CCDG 2 cut(s) 156, 190
Lsp1109I GCAGC 2 cut(s) 67, 106
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 254
MlsI TGGCCA 1 cut(s) 222
MluCI AATT 5 cut(s) 63, 88, 196, 261, 317
MluNI TGGCCA 1 cut(s) 222
MnlI CCTC 7 cut(s) 45, 76, 98, 171, 243, 249, 291
Mox20I TGGCCA 1 cut(s) 222
MscI TGGCCA 1 cut(s) 222
Msp20I TGGCCA 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 2 cut(s) 143, 177
MspR9I CCNGG 1 cut(s) 144
NciI CCSGG 1 cut(s) 144
NcoI CCATGG 1 cut(s) 307
NlaIII CATG 2 cut(s) 311, 354
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 254
PceI AGGCCT 1 cut(s) 280
PfeI GAWTC 2 cut(s) 29, 203
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 2 cut(s) 57, 121
PsiI TTATAA 1 cut(s) 131
Psp1406I AACGTT 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 166
SatI GCNGC 2 cut(s) 56, 120
Sau96I GGNCC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 144
SetI ASST 4 cut(s) 141, 168, 235, 290
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 5 cut(s) 63, 88, 196, 261, 317
SseBI AGGCCT 1 cut(s) 280
StuI AGGCCT 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 307
TaiI ACGT 1 cut(s) 290
TaqI TCGA 1 cut(s) 24
TasI AATT 5 cut(s) 63, 88, 196, 261, 317
TfiI GAWTC 2 cut(s) 29, 203
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 2 cut(s) 55, 119
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 280
Van91I CCANNNNNTGG 1 cut(s) 266
XapI RAATTY 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.