Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Forward (+)

6263043 .. 6264876

Gene Structure 1834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAATTCCAATAAAATTTGCCCTAAAAAATCAGGAGAGAGATTTTCCCCAAATAAAAGCCCATATCCAAAACTGCAATTCAGGCACTCCCAAATTCAGGTACACACACCTCTGCCACCTAGTAACTTAATGTCTCCTCTCTTGTTCCTCCCCTTCCTCCTCCTCCTGCTGCCCATAGCCGTGCCCGCCGCGCAACTCCGCCCCGGCCATTACTCCCAAACATGCCCGGAAGCAGAATCCGTTGTCCGGGACGTCATGAAGAAGGCTCTAGTCAAAGAGCCCCGCAGCCTTGCCTCTGTCATGCGCTTCCAATTCCATGACTGCTTTGTGAATGGCTGTGATGGTTCTATGTTACTTGATGACACGCCAACAATGCTTGGAGAAAAACTTTCCCTTTCAAATATAAATTCTCTGAGATCTTATGAGGTGGTTGATGAAGCCAAGGAAGCCTTGGAGAAGGTCTGTCCCGGAGCTGTTTCTTGCGCTGATATCGTAATCATGGCGGCTCGAGACGCTGTTGCTCTGACGGGAGGACCTGATTGGGAAGTGAAATTAGGGAGATTGGATAGCTTATCAGCTAGCCAGGAAGCATCAGACAACATTATGCCAAGTCCAAGAGCCAACGCAAGCTCCCTCATTGACCTCTTTGCCAAATTTAATCTTTCTGTCAAAGATCTCGTTGCCCTTTCGGGGTCACACTCCATTGGCCAAGGTAGGTGCTTTTCCATCATGTTTCGGCTGTACAACCAATCCGGCACTGGGAGGCCCGACCCTGCCTTTGAACCAAAGTATAGAGAAAAGTTGAACAGGCTTTGCCCTTTAAACGTGGACCAAAATGTGACCGGAGACCTGGATGCTACACCTTTGGTATTTGATAACCAGTACTTCAAGGACTTGGTTTTGGGGAGAGGCTTTCTGAATTCTGATCAGACACTTTACACATATCCACAAACTAGGACATACGTTAAACACTTCAGCAGTAACCAAGGAGAATTTTTCAAGGCCTTTGTTGAAGGGATGATAAAGATGGGCGACTTGCAGTTTGAGCAGCCTGGGGAGGTACGACGGAATTGTAGGGTGGCTAATCACCGTCCTGTCAACACGCTTTGGAATCTTGGAGGGATGAATCCGACTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

380

Amino Acids

42.14

Weight (kDa)

8.3

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	82 - 328	7.3e-75	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccII	CGCG	1 cut(s)	191
AciI	CCGC	5 cut(s)	186, 189, 199, 283, 503
AcoI	YGGCCR	2 cut(s)	205, 706
AcsI	RAATTY	7 cut(s)	4, 15, 93, 406, 653, 919, 992
AcuI	CTGAAG	1 cut(s)	958
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	4 cut(s)	102, 743, 884, 1062
AfiI	CCNNNNNNNGG	4 cut(s)	97, 246, 690, 759
AgsI	TTSAA	6 cut(s)	399, 782, 805, 889, 1000, 1013
AjnI	CCWGG	3 cut(s)	582, 849, 1051
AluBI	AGCT	4 cut(s)	473, 570, 578, 630
AluI	AGCT	4 cut(s)	473, 570, 578, 630
Alw26I	GTCTC	3 cut(s)	138, 504, 840
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	4 cut(s)	205, 706, 764, 1002
ApeKI	GCWGC	3 cut(s)	169, 285, 1048
ApoI	RAATTY	7 cut(s)	4, 15, 93, 406, 653, 919, 992
ArsI	GACNNNNNNTTYG	4 cut(s)	761, 793, 1025, 1057
AspLEI	GCGC	3 cut(s)	193, 306, 485
AspS9I	GGNCC	3 cut(s)	533, 765, 829
AsuC2I	CCSGG	4 cut(s)	204, 227, 248, 468
AsuHPI	GGTGA	1 cut(s)	1079
AsuNHI	GCTAGC	1 cut(s)	578
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	2 cut(s)	533, 829
BaeGI	GKGCMC	1 cut(s)	186
BalI	TGGCCA	1 cut(s)	708
BanII	GRGCYC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	156, 297, 1060
BccI	CCATC	3 cut(s)	335, 734, 1021
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	3 cut(s)	584, 851, 1053
BclI	TGATCA	1 cut(s)	925
BcnI	CCSGG	4 cut(s)	204, 227, 248, 468
BcoDI	GTCTC	3 cut(s)	138, 504, 840
BfaI	CTAG	4 cut(s)	120, 269, 579, 954
BglII	AGATCT	2 cut(s)	416, 673
BisI	GCNGC	5 cut(s)	170, 189, 286, 504, 1049
BlsI	GCNGC	5 cut(s)	171, 190, 287, 505, 1050
BmcAI	AGTACT	1 cut(s)	884
Bme1390I	CCNGG	7 cut(s)	204, 227, 248, 468, 584, 851, 1053
Bme18I	GGWCC	2 cut(s)	533, 829
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	3 cut(s)	533, 765, 829
BmrFI	CCNGG	7 cut(s)	204, 227, 248, 468, 584, 851, 1053
BmrI	ACTGGG	1 cut(s)	768
BmsI	GCATC	2 cut(s)	599, 844
BmtI	GCTAGC	1 cut(s)	582
BmuI	ACTGGG	1 cut(s)	768
BpuMI	CCSGG	4 cut(s)	204, 227, 248, 468
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	840
BsaJI	CCNNGG	6 cut(s)	202, 441, 450, 709, 985, 1052
BsaWI	WCCGGW	1 cut(s)	842
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 246, 690, 759
Bse1I	ACTGG	2 cut(s)	763, 880
BseBI	CCWGG	3 cut(s)	584, 851, 1053
BseDI	CCNNGG	6 cut(s)	202, 441, 450, 709, 985, 1052
BseGI	GGATG	3 cut(s)	859, 1023, 1128
BseLI	CCNNNNNNNGG	4 cut(s)	97, 246, 690, 759
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	763, 880
BseRI	GAGGAG	3 cut(s)	126, 149, 152
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	3 cut(s)	156, 297, 1060
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	4 cut(s)	207, 708, 766, 1004
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	6 cut(s)	204, 227, 247, 468, 753, 843
BslFI	GGGAC	2 cut(s)	263, 450
BslI	CCNNNNNNNGG	4 cut(s)	97, 246, 690, 759
BsmAI	GTCTC	3 cut(s)	138, 504, 840
BsmBI	CGTCTC	1 cut(s)	504
BsmFI	GGGAC	2 cut(s)	263, 450
BsnI	GGCC	4 cut(s)	207, 708, 766, 1004
Bso31I	GGTCTC	1 cut(s)	840
BsoBI	CYCGRG	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	186, 282
Bsp1407I	TGTACA	1 cut(s)	741
Bsp143I	GATC	3 cut(s)	416, 673, 925
BspACI	CCGC	5 cut(s)	186, 189, 199, 283, 503
BspANI	GGCC	4 cut(s)	207, 708, 766, 1004
BspCNI	CTCAG	1 cut(s)	405
BspFNI	CGCG	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	255
BspOI	GCTAGC	1 cut(s)	582
BspTNI	GGTCTC	1 cut(s)	840
BsrGI	TGTACA	1 cut(s)	741
BsrI	ACTGG	2 cut(s)	763, 880
BssECI	CCNNGG	6 cut(s)	202, 441, 450, 709, 985, 1052
BssMI	GATC	3 cut(s)	416, 673, 925
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	4 cut(s)	441, 450, 709, 985
Bst2UI	CCWGG	3 cut(s)	584, 851, 1053
Bst4CI	ACNGT	1 cut(s)	1091
BstACI	GRCGYC	1 cut(s)	252
BstAUI	TGTACA	1 cut(s)	741
BstC8I	GCNNGC	3 cut(s)	186, 580, 628
BstDEI	CTNAG	1 cut(s)	413
BstF5I	GGATG	3 cut(s)	859, 1023, 1128
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	3 cut(s)	193, 306, 485
BstKTI	GATC	3 cut(s)	419, 676, 928
BstMAI	GTCTC	3 cut(s)	138, 504, 840
BstMBI	GATC	3 cut(s)	416, 673, 925
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 185, 190, 373, 446, 512, 1045
BstNI	CCWGG	3 cut(s)	584, 851, 1053
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	7 cut(s)	202, 225, 246, 466, 582, 849, 1051
BstSLI	GKGCMC	1 cut(s)	186
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	156, 297, 1060
BstX2I	RGATCY	2 cut(s)	416, 673
BstYI	RGATCY	2 cut(s)	416, 673
BsuRI	GGCC	4 cut(s)	207, 708, 766, 1004
BtsCI	GGATG	3 cut(s)	859, 1023, 1128
BtsIMutI	CAGTG	1 cut(s)	756
Cac8I	GCNNGC	3 cut(s)	186, 580, 628
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	3 cut(s)	193, 306, 485
Cfr13I	GGNCC	3 cut(s)	533, 765, 829
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	4 cut(s)	101, 742, 883, 1061
CviAII	CATG	6 cut(s)	222, 256, 301, 317, 499, 730
CviQI	GTAC	4 cut(s)	101, 742, 883, 1061
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	3 cut(s)	418, 675, 927
DpnII	GATC	3 cut(s)	416, 673, 925
DraI	TTTAAA	1 cut(s)	822
EaeI	YGGCCR	2 cut(s)	205, 706
EciI	GGCGGA	1 cut(s)	188
Eco130I	CCWWGG	4 cut(s)	441, 450, 709, 985
Eco147I	AGGCCT	1 cut(s)	1004
Eco24I	GRGCYC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	840
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	2 cut(s)	533, 829
Eco57I	CTGAAG	1 cut(s)	958
Eco88I	CYCGRG	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	533
EcoRI	GAATTC	2 cut(s)	4, 919
EcoRII	CCWGG	3 cut(s)	582, 849, 1051
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	4 cut(s)	441, 450, 709, 985
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	4 cut(s)	441, 450, 709, 985
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	6 cut(s)	225, 259, 304, 320, 502, 733
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	2 cut(s)	263, 450
FatI	CATG	6 cut(s)	221, 255, 300, 316, 498, 729
FauI	CCCGC	2 cut(s)	193, 290
FbaI	TGATCA	1 cut(s)	925
Fnu4HI	GCNGC	5 cut(s)	170, 189, 286, 504, 1049
FokI	GGATG	3 cut(s)	866, 1030, 1135
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	5 cut(s)	170, 189, 286, 504, 1049
FspBI	CTAG	4 cut(s)	120, 269, 579, 954
GlaI	GCGC	3 cut(s)	192, 305, 484
GluI	GCNGC	5 cut(s)	170, 189, 286, 504, 1049
HaeIII	GGCC	4 cut(s)	207, 708, 766, 1004
HapII	CCGG	6 cut(s)	204, 227, 247, 468, 753, 843
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	3 cut(s)	193, 306, 485
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	6 cut(s)	225, 259, 304, 320, 502, 733
Hin6I	GCGC	3 cut(s)	191, 304, 483
HinP1I	GCGC	3 cut(s)	191, 304, 483
HincII	GTYRAC	1 cut(s)	1099
HindII	GTYRAC	1 cut(s)	1099
HinfI	GANTC	3 cut(s)	236, 1111, 1126
HpaII	CCGG	6 cut(s)	204, 227, 247, 468, 753, 843
HphI	GGTGA	1 cut(s)	1079
Hpy166II	GTNNAC	3 cut(s)	103, 829, 1099
Hpy188I	TCNGA	8 cut(s)	414, 525, 595, 918, 925, 930, 1131, 1139
Hpy188III	TCNNGA	3 cut(s)	33, 256, 509
Hpy8I	GTNNAC	3 cut(s)	103, 829, 1099
Hpy99I	CGWCG	1 cut(s)	1068
HpyAV	CCTTC	4 cut(s)	163, 256, 451, 1007
HpyCH4III	ACNGT	1 cut(s)	1091
HpyCH4IV	ACGT	3 cut(s)	252, 825, 963
HpyCH4V	TGCA	2 cut(s)	76, 1039
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 185, 190, 373, 446, 512, 1045
HpyF3I	CTNAG	1 cut(s)	413
HpySE526I	ACGT	3 cut(s)	252, 825, 963
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	6 cut(s)	225, 259, 304, 320, 502, 733
HspAI	GCGC	3 cut(s)	191, 304, 483
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	3 cut(s)	416, 673, 925
LmnI	GCTCC	2 cut(s)	470, 635
Lsp1109I	GCAGC	3 cut(s)	156, 297, 1060
LweI	GCATC	2 cut(s)	599, 844
MaeI	CTAG	4 cut(s)	120, 269, 579, 954
MaeII	ACGT	3 cut(s)	252, 825, 963
MaeIII	GTNAC	5 cut(s)	122, 351, 693, 838, 980
MalI	GATC	3 cut(s)	418, 675, 927
MboI	GATC	3 cut(s)	416, 673, 925
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	2 cut(s)	416, 673
MhlI	GDGCHC	2 cut(s)	186, 282
MlsI	TGGCCA	1 cut(s)	708
MluNI	TGGCCA	1 cut(s)	708
Mox20I	TGGCCA	1 cut(s)	708
MscI	TGGCCA	1 cut(s)	708
MseI	TTAA	4 cut(s)	128, 657, 821, 966
MslI	CAYNNNNRTG	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	708
MspI	CCGG	6 cut(s)	204, 227, 247, 468, 753, 843
MspR9I	CCNGG	7 cut(s)	204, 227, 248, 468, 584, 851, 1053
MvaI	CCWGG	3 cut(s)	584, 851, 1053
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	7 cut(s)	82, 185, 190, 373, 446, 512, 1045
NciI	CCSGG	4 cut(s)	204, 227, 248, 468
NdeII	GATC	3 cut(s)	416, 673, 925
NheI	GCTAGC	1 cut(s)	578
NlaIII	CATG	6 cut(s)	225, 259, 304, 320, 502, 733
NmuCI	GTSAC	2 cut(s)	693, 838
NspI	RCATGY	1 cut(s)	225
PaeR7I	CTCGAG	1 cut(s)	507
PagI	TCATGA	1 cut(s)	255
PceI	AGGCCT	1 cut(s)	1004
PfeI	GAWTC	3 cut(s)	236, 1111, 1126
PfoI	TCCNGGA	2 cut(s)	246, 466
PkrI	GCNGC	5 cut(s)	171, 190, 287, 505, 1050
PpuMI	RGGWCCY	1 cut(s)	533
Psp5II	RGGWCCY	1 cut(s)	533
Psp6I	CCWGG	3 cut(s)	582, 849, 1051
PspGI	CCWGG	3 cut(s)	582, 849, 1051
PspPI	GGNCC	3 cut(s)	533, 765, 829
PspPPI	RGGWCCY	1 cut(s)	533
PsuI	RGATCY	2 cut(s)	416, 673
RsaI	GTAC	4 cut(s)	102, 743, 884, 1062
RsaNI	GTAC	4 cut(s)	101, 742, 883, 1061
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	4 cut(s)	128, 657, 821, 966
SatI	GCNGC	5 cut(s)	170, 189, 286, 504, 1049
Sau3AI	GATC	3 cut(s)	416, 673, 925
Sau96I	GGNCC	3 cut(s)	533, 765, 829
ScaI	AGTACT	1 cut(s)	884
ScrFI	CCNGG	7 cut(s)	204, 227, 248, 468, 584, 851, 1053
SduI	GDGCHC	2 cut(s)	186, 282
SfaNI	GCATC	2 cut(s)	599, 844
Sfr274I	CTCGAG	1 cut(s)	507
SinI	GGWCC	2 cut(s)	533, 829
SlaI	CTCGAG	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	507
SmoI	CTYRAG	1 cut(s)	507
SseBI	AGGCCT	1 cut(s)	1004
SsiI	CCGC	5 cut(s)	186, 189, 199, 283, 503
SspMI	CTAG	4 cut(s)	120, 269, 579, 954
StuI	AGGCCT	1 cut(s)	1004
StyD4I	CCNGG	7 cut(s)	202, 225, 246, 466, 582, 849, 1051
StyI	CCWWGG	4 cut(s)	441, 450, 709, 985
TaaI	ACNGT	1 cut(s)	1091
TaiI	ACGT	3 cut(s)	255, 828, 966
TaqI	TCGA	1 cut(s)	508
TatI	WGTACW	2 cut(s)	741, 882
TauI	GCSGC	2 cut(s)	191, 506
TfiI	GAWTC	3 cut(s)	236, 1111, 1126
Tru1I	TTAA	4 cut(s)	128, 657, 821, 966
Tru9I	TTAA	4 cut(s)	128, 657, 821, 966
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	2 cut(s)	693, 838
TseI	GCWGC	3 cut(s)	169, 285, 1048
Tsp45I	GTSAC	2 cut(s)	693, 838
TspDTI	ATGAA	4 cut(s)	17, 272, 450, 1139
TspGWI	ACGGA	2 cut(s)	229, 1081
TspRI	CASTG	1 cut(s)	763
VpaK11BI	GGWCC	2 cut(s)	533, 829
XapI	RAATTY	7 cut(s)	4, 15, 93, 406, 653, 919, 992
XceI	RCATGY	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	2 cut(s)	448, 755
XhoI	CTCGAG	1 cut(s)	507
XspI	CTAG	4 cut(s)	120, 269, 579, 954
ZraI	GACGTC	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.