pycom02g03790

Membrane-bound transcription factor site-1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
2531272 .. 2533960
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g03790.2

Sequence Viewer

Length: 1425 bp
ATGACCGCTCCTCCTCCTCGCGCCACCACGTCATCGCTCTCTCTTCTCTTCGTCGTCATCTCCATTTCAGTTTCCATCTCCATCTCTCTCCTCCATTTCAGACCCCAAAATTCCCCAACCCTGAACCGAAACCTTCCCCCAAATTCGTCGCGTCCCCAGGCCAACCGCCAAAGGTACGTCGTTCGATTTGTGGAGTACAGGAGGGCGGAGGAGTTCCGAGAGTATTTAAAATCAGGAGTGCGATCCGATGGGTGGGATTGGATCGAGAGGAACAACCCGGCGAAGAAGTATCCGACGGATTTCGGGTTGGTTTGGATAGAAGACTCGGTGAAAGAAAGGGTATTTTCGGAAATTGGGAGCTTGGGAATGGTGAAGGATGTGAATGCGGATGTGAGGTATGGAAGGGGTTTGCTTGCTGAGGGGAAAAGGGACAGAGTTGGGGCTTTTGTCGATGGGAAGAAGCGGCCAGGGAAGATCTTGACGGGGATGTCGTTCAGTGAAGCCGACGGTGATGCATTTTACTCCGCCACAAGTAATTCTTCGATTAGCTGGAGAAGGCAGCTCATGTCTCAGAGATCTCAAATTACTTCATTGTTTGGGGCTGAGTCCCTTTGGGAAAAAGGTTATACTGGTGTAATTGTCAAAATGGCCATCTTTGACACTGGAATTCGAGCTAATCACCCGCATTTTCGTAATATCAAGGAGCGCACAAACTGGACAAATGAAGATACTTTAAATCATAACCTTGGGCATGGGACATTTGTTGCTGGTGTTATTGCTGGTGTAGATGCAGAGTGTCTTGGTTTTGCTCCTGACACAGAGATTTATGCTTTTCGTGTGTTTACAGATGCACAGGTATCATACACATCATGGTTCCTTGACGCTTTCAACTATGCAATTGCAACCAATATGGATGTGCTAAATCTGAGTATTGGTGGACCTGATTATTTGGACCTCCCATTTGTAGAGAAGGTTTGGGAAATAACTGCAAACAACATAATTATGGTTTCGGCAATTGGAAATGATGGACCACTTTACGGAACTCTAAACAATCCAGCAGACCAAAGTGATATCATTGGCGTTGGTGGCATTGACTACAGTGATCACATTGCTTCTTTCTCGTCACGTGGCATGAGTACATGGGAGATGCCTCATGGTTATGGTCGGGTGAAGCCAGATGTTGTTGCATATGGACGGGACATCATGGGATCCAAGATCAGTACAGGCTGTAAAAGCTTATCGGGCACAAGTGTGGCAAGTCCTGTGGTTGCTGGTATGGTGTGTCTTCTTGTCAGTTTTATCCCTGTGAGCATTAGGAAGGATATTTTAAATCCAGCAAGCATGAAACAAGCACTCGTTCAGGGTGCTGCGAAGCTTTCTGGTCCAAATATGTATGAGCAGGGTGCAGGCAGGGTTGATCTGTAA

Protein Analysis

475

Amino Acids

52.1

Weight (kDa)

7.7

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 487
AccBSI CCGCTC 1 cut(s) 8
AccII CGCG 2 cut(s) 21, 151
AciI CCGC 7 cut(s) 6, 166, 206, 386, 463, 525, 683
AclWI GGATC 4 cut(s) 237, 269, 1203, 1216
AcoI YGGCCR 2 cut(s) 464, 648
AcsI RAATTY 3 cut(s) 109, 142, 666
AcvI CACGTG 1 cut(s) 1127
AfaI GTAC 4 cut(s) 176, 197, 1138, 1222
AfiI CCNNNNNNNGG 2 cut(s) 252, 1037
AgsI TTSAA 1 cut(s) 889
AjiI CACGTC 1 cut(s) 30
AjnI CCWGG 2 cut(s) 156, 466
AleI CACNNNNGTG 1 cut(s) 1250
AluBI AGCT 6 cut(s) 360, 549, 562, 674, 1236, 1375
AluI AGCT 6 cut(s) 360, 549, 562, 674, 1236, 1375
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 4 cut(s) 237, 269, 1203, 1216
AoxI GGCC 3 cut(s) 159, 464, 648
ApeKI GCWGC 2 cut(s) 559, 1367
ApoI RAATTY 3 cut(s) 109, 142, 666
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
AspLEI GCGC 2 cut(s) 23, 708
AspS9I GGNCC 4 cut(s) 938, 952, 1028, 1382
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 5 cut(s) 340, 382, 521, 671, 1180
AvaII GGWCC 4 cut(s) 938, 952, 1028, 1382
BaeGI GKGCMC 1 cut(s) 1247
BalI TGGCCA 1 cut(s) 650
BamHI GGATCC 1 cut(s) 1208
BbrPI CACGTG 1 cut(s) 1127
BbsI GAAGAC 2 cut(s) 327, 1277
BbvCI CCTCAGC 1 cut(s) 417
BbvI GCAGC 2 cut(s) 571, 1354
BccI CCATC 6 cut(s) 83, 89, 242, 446, 659, 1019
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BciT130I CCWGG 2 cut(s) 158, 468
BciVI GTATCC 1 cut(s) 300
BclI TGATCA 1 cut(s) 1102
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 573
BfmI CTRYAG 1 cut(s) 1096
BfuI GTATCC 1 cut(s) 300
BglII AGATCT 2 cut(s) 474, 575
BisI GCNGC 3 cut(s) 464, 560, 1368
BlsI GCNGC 3 cut(s) 465, 561, 1369
Bme1390I CCNGG 3 cut(s) 158, 278, 468
Bme18I GGWCC 4 cut(s) 938, 952, 1028, 1382
BmgBI CACGTC 1 cut(s) 30
BmgT120I GGNCC 4 cut(s) 938, 952, 1028, 1382
BmiI GGNNCC 2 cut(s) 875, 1210
BmrFI CCNGG 3 cut(s) 158, 278, 468
BmsI GCATC 4 cut(s) 502, 778, 838, 1137
BpiI GAAGAC 2 cut(s) 327, 1277
BpmI CTGGAG 1 cut(s) 571
Bpu10I CCTNAGC 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 1127
BsaJI CCNNGG 3 cut(s) 156, 467, 745
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 1037
Bse1I ACTGG 3 cut(s) 634, 667, 719
Bse3DI GCAATG 1 cut(s) 1107
BseBI CCWGG 2 cut(s) 158, 468
BseDI CCNNGG 3 cut(s) 156, 467, 745
BseGI GGATG 4 cut(s) 382, 394, 492, 919
BseLI CCNNNNNNNGG 2 cut(s) 252, 1037
BseMI GCAATG 1 cut(s) 1107
BseMII CTCAG 4 cut(s) 408, 584, 594, 917
BseNI ACTGG 3 cut(s) 634, 667, 719
BseRI GAGGAG 3 cut(s) 6, 80, 224
BseSI GKGCMC 1 cut(s) 1247
BseXI GCAGC 2 cut(s) 571, 1354
BsgI GTGCAG 1 cut(s) 1425
Bsh1236I CGCG 2 cut(s) 21, 151
BshFI GGCC 3 cut(s) 161, 466, 650
BsiSI CCGG 1 cut(s) 278
BslFI GGGAC 5 cut(s) 138, 443, 592, 769, 1211
BslI CCNNNNNNNGG 2 cut(s) 252, 1037
BsmAI GTCTC 1 cut(s) 573
BsmFI GGGAC 5 cut(s) 138, 443, 592, 769, 1211
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 3 cut(s) 161, 466, 650
Bsp1286I GDGCHC 1 cut(s) 1247
Bsp143I GATC 8 cut(s) 242, 261, 474, 575, 1102, 1208, 1215, 1417
BspACI CCGC 7 cut(s) 6, 166, 206, 386, 463, 525, 683
BspANI GGCC 3 cut(s) 161, 466, 650
BspCNI CTCAG 4 cut(s) 409, 583, 595, 918
BspFNI CGCG 2 cut(s) 21, 151
BspLI GGNNCC 2 cut(s) 875, 1210
BspPI GGATC 4 cut(s) 237, 269, 1203, 1216
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 1107
BsrI ACTGG 3 cut(s) 634, 667, 719
BssECI CCNNGG 3 cut(s) 156, 467, 745
BssMI GATC 8 cut(s) 242, 261, 474, 575, 1102, 1208, 1215, 1417
BssT1I CCWWGG 1 cut(s) 745
Bst2UI CCWGG 2 cut(s) 158, 468
Bst4CI ACNGT 2 cut(s) 509, 1100
Bst6I CTCTTC 2 cut(s) 48, 53
BstBAI YACGTR 1 cut(s) 1127
BstC8I GCNNGC 3 cut(s) 414, 1339, 1408
BstDEI CTNAG 4 cut(s) 417, 570, 603, 926
BstF5I GGATG 4 cut(s) 382, 394, 492, 919
BstFNI CGCG 2 cut(s) 21, 151
BstHHI GCGC 2 cut(s) 23, 708
BstKTI GATC 8 cut(s) 245, 264, 477, 578, 1105, 1211, 1218, 1420
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 8 cut(s) 242, 261, 474, 575, 1102, 1208, 1215, 1417
BstMWI GCNNNNNNNGC 3 cut(s) 1086, 1233, 1242
BstNI CCWGG 2 cut(s) 158, 468
BstSCI CCNGG 3 cut(s) 156, 276, 466
BstSFI CTRYAG 1 cut(s) 1096
BstSLI GKGCMC 1 cut(s) 1247
BstUI CGCG 2 cut(s) 21, 151
BstV1I GCAGC 2 cut(s) 571, 1354
BstV2I GAAGAC 2 cut(s) 327, 1277
BstX2I RGATCY 3 cut(s) 474, 575, 1208
BstYI RGATCY 3 cut(s) 474, 575, 1208
BsuI GTATCC 1 cut(s) 300
BsuRI GGCC 3 cut(s) 161, 466, 650
BtgZI GCGATG 1 cut(s) 18
BtrI CACGTC 1 cut(s) 30
BtsCI GGATG 4 cut(s) 382, 394, 492, 919
BtsIMutI CAGTG 3 cut(s) 502, 660, 1105
Cac8I GCNNGC 3 cut(s) 414, 1339, 1408
CfoI GCGC 2 cut(s) 23, 708
Cfr13I GGNCC 4 cut(s) 938, 952, 1028, 1382
CseI GACGC 2 cut(s) 140, 890
Csp6I GTAC 4 cut(s) 175, 196, 1137, 1221
CspCI CAANNNNNGTGG 2 cut(s) 1245, 1280
CviAII CATG 8 cut(s) 565, 752, 870, 1132, 1140, 1154, 1204, 1342
CviQI GTAC 4 cut(s) 175, 196, 1137, 1221
DdeI CTNAG 4 cut(s) 417, 570, 603, 926
DpnI GATC 8 cut(s) 244, 263, 476, 577, 1104, 1210, 1217, 1419
DpnII GATC 8 cut(s) 242, 261, 474, 575, 1102, 1208, 1215, 1417
DraI TTTAAA 3 cut(s) 228, 735, 1329
DrdI GACNNNNNNGTC 1 cut(s) 487
DseDI GACNNNNNNGTC 1 cut(s) 487
EaeI YGGCCR 2 cut(s) 464, 648
Eam1104I CTCTTC 2 cut(s) 48, 53
EarI CTCTTC 2 cut(s) 48, 53
EciI GGCGGA 2 cut(s) 221, 514
Eco130I CCWWGG 1 cut(s) 745
Eco32I GATATC 1 cut(s) 1072
Eco47I GGWCC 4 cut(s) 938, 952, 1028, 1382
Eco72I CACGTG 1 cut(s) 1127
EcoRI GAATTC 1 cut(s) 666
EcoRII CCWGG 2 cut(s) 156, 466
EcoRV GATATC 1 cut(s) 1072
EcoT14I CCWWGG 1 cut(s) 745
EcoT22I ATGCAT 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 745
FaeI CATG 8 cut(s) 568, 755, 873, 1135, 1143, 1157, 1207, 1345
FalI AAGNNNNNCTT 2 cut(s) 523, 555
FaqI GGGAC 5 cut(s) 138, 443, 592, 769, 1211
FatI CATG 8 cut(s) 564, 751, 869, 1131, 1139, 1153, 1203, 1341
FauI CCCGC 1 cut(s) 690
FauNDI CATATG 1 cut(s) 1189
FbaI TGATCA 1 cut(s) 1102
Fnu4HI GCNGC 3 cut(s) 464, 560, 1368
FokI GGATG 4 cut(s) 389, 401, 499, 926
Fsp4HI GCNGC 3 cut(s) 464, 560, 1368
GlaI GCGC 2 cut(s) 22, 707
GluI GCNGC 3 cut(s) 464, 560, 1368
GsuI CTGGAG 1 cut(s) 571
HaeIII GGCC 3 cut(s) 161, 466, 650
HapII CCGG 1 cut(s) 278
HgaI GACGC 2 cut(s) 140, 890
HhaI GCGC 2 cut(s) 23, 708
Hin1II CATG 8 cut(s) 568, 755, 873, 1135, 1143, 1157, 1207, 1345
Hin6I GCGC 2 cut(s) 21, 706
HinP1I GCGC 2 cut(s) 21, 706
HindIII AAGCTT 2 cut(s) 1234, 1373
HinfI GANTC 2 cut(s) 323, 605
HpaII CCGG 1 cut(s) 278
HphI GGTGA 5 cut(s) 340, 382, 521, 671, 1180
Hpy166II GTNNAC 2 cut(s) 843, 938
Hpy188I TCNGA 7 cut(s) 101, 218, 247, 294, 349, 573, 927
Hpy188III TCNNGA 4 cut(s) 234, 265, 478, 812
Hpy8I GTNNAC 2 cut(s) 843, 938
Hpy99I CGWCG 5 cut(s) 56, 151, 182, 298, 509
HpyAV CCTTC 6 cut(s) 143, 367, 396, 549, 964, 1312
HpyCH4III ACNGT 2 cut(s) 509, 1100
HpyCH4IV ACGT 3 cut(s) 29, 177, 1126
HpyCH4V TGCA 8 cut(s) 515, 791, 851, 896, 902, 989, 1187, 1406
HpyF10VI GCNNNNNNNGC 3 cut(s) 1086, 1233, 1242
HpyF3I CTNAG 4 cut(s) 417, 570, 603, 926
HpySE526I ACGT 3 cut(s) 29, 177, 1126
Hsp92II CATG 8 cut(s) 568, 755, 873, 1135, 1143, 1157, 1207, 1345
HspAI GCGC 2 cut(s) 21, 706
Ksp22I TGATCA 1 cut(s) 1102
Kzo9I GATC 8 cut(s) 242, 261, 474, 575, 1102, 1208, 1215, 1417
LmnI GCTCC 4 cut(s) 13, 357, 703, 814
Lsp1109I GCAGC 2 cut(s) 571, 1354
LweI GCATC 4 cut(s) 502, 778, 838, 1137
MaeII ACGT 3 cut(s) 29, 177, 1126
MaeIII GTNAC 1 cut(s) 1122
MalI GATC 8 cut(s) 244, 263, 476, 577, 1104, 1210, 1217, 1419
MbiI CCGCTC 1 cut(s) 8
MboI GATC 8 cut(s) 242, 261, 474, 575, 1102, 1208, 1215, 1417
MboII GAAGA 9 cut(s) 35, 40, 295, 332, 469, 484, 531, 737, 1277
MfeI CAATTG 2 cut(s) 897, 1014
MflI RGATCY 3 cut(s) 474, 575, 1208
MhlI GDGCHC 1 cut(s) 1247
MlsI TGGCCA 1 cut(s) 650
MluNI TGGCCA 1 cut(s) 650
MlyI GAGTC 2 cut(s) 317, 614
MmeI TCCRAC 1 cut(s) 317
Mox20I TGGCCA 1 cut(s) 650
Mph1103I ATGCAT 1 cut(s) 517
MscI TGGCCA 1 cut(s) 650
MseI TTAA 3 cut(s) 227, 734, 1328
MslI CAYNNNNRTG 3 cut(s) 1001, 1158, 1250
Msp20I TGGCCA 1 cut(s) 650
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 3 cut(s) 158, 278, 468
MunI CAATTG 2 cut(s) 897, 1014
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 2 cut(s) 158, 468
MvnI CGCG 2 cut(s) 21, 151
MwoI GCNNNNNNNGC 3 cut(s) 1086, 1233, 1242
NciI CCSGG 1 cut(s) 278
NdeI CATATG 1 cut(s) 1189
NdeII GATC 8 cut(s) 242, 261, 474, 575, 1102, 1208, 1215, 1417
NlaIII CATG 8 cut(s) 568, 755, 873, 1135, 1143, 1157, 1207, 1345
NlaIV GGNNCC 2 cut(s) 875, 1210
NmuCI GTSAC 1 cut(s) 1122
NsiI ATGCAT 1 cut(s) 517
OliI CACNNNNGTG 1 cut(s) 1250
PcsI WCGNNNNNNNCGW 1 cut(s) 488
PctI GAATGC 1 cut(s) 388
PkrI GCNGC 3 cut(s) 465, 561, 1369
PleI GAGTC 2 cut(s) 317, 613
PmaCI CACGTG 1 cut(s) 1127
PmlI CACGTG 1 cut(s) 1127
PpsI GAGTC 2 cut(s) 317, 613
Ppu21I YACGTR 1 cut(s) 1127
Psp6I CCWGG 2 cut(s) 156, 466
PspCI CACGTG 1 cut(s) 1127
PspGI CCWGG 2 cut(s) 156, 466
PspN4I GGNNCC 2 cut(s) 875, 1210
PspPI GGNCC 4 cut(s) 938, 952, 1028, 1382
PsuI RGATCY 3 cut(s) 474, 575, 1208
RsaI GTAC 4 cut(s) 176, 197, 1138, 1222
RsaNI GTAC 4 cut(s) 175, 196, 1137, 1221
RseI CAYNNNNRTG 3 cut(s) 1001, 1158, 1250
SaqAI TTAA 3 cut(s) 227, 734, 1328
SatI GCNGC 3 cut(s) 464, 560, 1368
Sau3AI GATC 8 cut(s) 242, 261, 474, 575, 1102, 1208, 1215, 1417
Sau96I GGNCC 4 cut(s) 938, 952, 1028, 1382
SchI GAGTC 2 cut(s) 317, 614
ScrFI CCNGG 3 cut(s) 158, 278, 468
SduI GDGCHC 1 cut(s) 1247
SfaNI GCATC 4 cut(s) 502, 778, 838, 1137
SfcI CTRYAG 1 cut(s) 1096
SinI GGWCC 4 cut(s) 938, 952, 1028, 1382
SmiMI CAYNNNNRTG 3 cut(s) 1001, 1158, 1250
SsiI CCGC 7 cut(s) 6, 166, 206, 386, 463, 525, 683
StyD4I CCNGG 3 cut(s) 156, 276, 466
StyI CCWWGG 1 cut(s) 745
TaaI ACNGT 2 cut(s) 509, 1100
TaiI ACGT 3 cut(s) 32, 180, 1129
TaqI TCGA 5 cut(s) 184, 264, 450, 542, 670
TatI WGTACW 3 cut(s) 195, 1136, 1220
TauI GCSGC 1 cut(s) 466
Tru1I TTAA 3 cut(s) 227, 734, 1328
Tru9I TTAA 3 cut(s) 227, 734, 1328
TscAI CASTG 3 cut(s) 502, 667, 1105
TseFI GTSAC 1 cut(s) 1122
TseI GCWGC 2 cut(s) 559, 1367
Tsp45I GTSAC 1 cut(s) 1122
TspDTI ATGAA 3 cut(s) 579, 738, 1358
TspGWI ACGGA 2 cut(s) 311, 1053
TspRI CASTG 3 cut(s) 502, 667, 1105
VpaK11BI GGWCC 4 cut(s) 938, 952, 1028, 1382
XapI RAATTY 3 cut(s) 109, 142, 666
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.