Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002222

Physical Location & Seq

Genomic Coordinates Forward (+)

2534640 .. 2535291

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTCAACATGTTACGAGACGCTGGGTATTATGTCAAAACACTTGGTTCGCCATTTACTTGCTTTGATGCTCTCCGGTATTGGACACTTCTTCTTGTCGATCTTGAAGAAGAGTACTTCCAGGAGGAGATTGAAAAGCTTCGAGATGATGTTCTTAATTCTGGACTGGGATTAGCGGTGTTTTCTGAATGGTATAATGTGGACACAATGGTGAAGATGAGATTCTTTGATGATAACACACGGAGCTGGTGGACTCCAGTCACTGGTGGCGCAAATATTCCAGCATTGAATGACCTTTTAGCTCCATTTGGGATTGCATTTGGAGATAAGATTCTGAATGGTGATTTTTCTATTAATGGTGAGCATAGTCGATATGCATCTGGAACGGATATTGTGAGGTTTCCACGCGGTGGTTATTTGCACAAGTTCCCTTTAGTTGATAGCTCTGAAAGCGGGGCCACTCAAAATGTACTTCGGACTCCTGAGATGACCACGATTCTCCCATTCTTGGTCTTGTGGAGGCGGGTGAAGGTCGTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005794 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006984 GO:0006986 GO:0006996 GO:0007033 GO:0007040 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008237 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0017171 GO:0019216 GO:0019218 GO:0019222 GO:0019538 GO:0023052 GO:0030968 GO:0031090 GO:0031293 GO:0031974 GO:0031984 GO:0033554 GO:0033619 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036500 GO:0042175 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045540 GO:0046890 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051716 GO:0062012 GO:0065007 GO:0070011 GO:0070013 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0080090 GO:0080171 GO:0090181 GO:0098588 GO:0098791 GO:0098827 GO:0106118 GO:0140096 GO:1901564 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Peptidase_S8

Protein Analysis

181

Amino Acids

20.56

Weight (kDa)

4.91

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19660 AT5G19660 AT5G19660
fragaria_vesca	FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670
malus_domestica	MD02G1045500.v1.1 MD15G1183900.v1.1
prunus_persica	Prupe.7G232300_v2.0.a1 Prupe.7G232300_v2.0.a1
pyrus_communis	pycom02g03790 pycom02g03800 pycom02g03810 pycom15g16550
rosa_chinensis	RchiOBHm_Chr2g0090281
rosa_laevigata	RLG00000008526 RLG00000016094 RLG00000021848 RLG00000032088
rosa_multiflora	Rmu_sc0000714.1_g000011 Rmu_sc0004834.1_g000013 Rmu_sc0005276.1_g000005
rosa_roxburghii	Rroxscaffold_2G00085240 Rroxscaffold_2G00151320
rosa_rugosa	Rorug02G0006200
rosa_samantha	Rh1DG037900 Rh2AG052100 Rh2BG050700 Rh2CG052900 Rh2DG052000 Rh5AG367600 Rh5AG473400 Rh5BG377700 Rh5BG493700 Rh5CG401100 Rh5CG517700 Rh5DG391000 Rh5DG505700
rosa_wichuraiana	Rw2G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	263, 410
AccII	CGCG	1 cut(s)	408
AciI	CCGC	4 cut(s)	176, 408, 453, 523
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	2 cut(s)	116, 471
AfiI	CCNNNNNNNGG	3 cut(s)	263, 410, 508
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	4 cut(s)	7, 107, 134, 289
AjnI	CCWGG	1 cut(s)	120
AleI	CACNNNNGTG	1 cut(s)	209
AluBI	AGCT	4 cut(s)	139, 246, 302, 444
AluI	AGCT	4 cut(s)	139, 246, 302, 444
Alw26I	GTCTC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	456
AseI	ATTAAT	1 cut(s)	354
Asp700I	GAANNNNTTC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	456
AsuHPI	GGTGA	4 cut(s)	223, 353, 371, 538
BciT130I	CCWGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	12
BmcAI	AGTACT	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	2 cut(s)	58, 386
BmuI	ACTGGG	1 cut(s)	176
BoxI	GACNNNNGTC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	376
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 410, 508
Bse1I	ACTGG	3 cut(s)	171, 257, 268
Bse8I	GATNNNNATC	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	122
BseJI	GATNNNNATC	1 cut(s)	376
BseLI	CCNNNNNNNGG	3 cut(s)	263, 410, 508
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	3 cut(s)	171, 257, 268
BseRI	GAGGAG	1 cut(s)	140
BseYI	CCCAGC	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	76
BslI	CCNNNNNNNGG	3 cut(s)	263, 410, 508
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	458
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	4 cut(s)	176, 408, 453, 523
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	475
BspFNI	CGCG	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	457
BsrI	ACTGG	3 cut(s)	171, 257, 268
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	483
BstFNI	CGCG	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	450
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	13
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	263
CfoI	GCGC	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	456
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	115, 470
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	5 cut(s)	139, 246, 302, 444, 458
CviKI_1	RGCY	5 cut(s)	139, 246, 302, 444, 458
CviQI	GTAC	2 cut(s)	115, 470
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DraIII	CACNNNGTG	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	379
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	13
FaiI	YATR	5 cut(s)	11, 33, 195, 366, 375
FatI	CATG	1 cut(s)	9
FauI	CCCGC	2 cut(s)	446, 516
GlaI	GCGC	1 cut(s)	271
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	5 cut(s)	222, 253, 331, 478, 496
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	4 cut(s)	223, 353, 371, 538
Hpy166II	GTNNAC	2 cut(s)	202, 252
Hpy188I	TCNGA	4 cut(s)	187, 336, 448, 477
Hpy188III	TCNNGA	5 cut(s)	104, 143, 162, 381, 482
Hpy8I	GTNNAC	2 cut(s)	202, 252
HpyAV	CCTTC	1 cut(s)	523
HpyCH4V	TGCA	3 cut(s)	317, 377, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	450
HpyF3I	CTNAG	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	2 cut(s)	243, 307
LweI	GCATC	2 cut(s)	58, 386
MaeIII	GTNAC	2 cut(s)	12, 259
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	4 cut(s)	83, 119, 122, 226
MluCI	AATT	1 cut(s)	157
MlyI	GAGTC	2 cut(s)	247, 472
MnlI	CCTC	3 cut(s)	118, 390, 513
Mph1103I	ATGCAT	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	2 cut(s)	156, 354
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	450
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	1 cut(s)	13
OliI	CACNNNNGTG	1 cut(s)	209
PciI	ACATGT	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	3 cut(s)	222, 331, 496
PflMI	CCANNNNNTGG	2 cut(s)	263, 410
PfoI	TCCNGGA	1 cut(s)	120
PleI	GAGTC	2 cut(s)	247, 472
PpsI	GAGTC	2 cut(s)	247, 472
PscI	ACATGT	1 cut(s)	9
PshAI	GACNNNNGTC	1 cut(s)	257
PshBI	ATTAAT	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	457
PspPI	GGNCC	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	263
RsaI	GTAC	2 cut(s)	116, 471
RsaNI	GTAC	2 cut(s)	115, 470
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	156, 354
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	456
ScaI	AGTACT	1 cut(s)	116
SchI	GAGTC	2 cut(s)	247, 472
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	7 cut(s)	141, 248, 297, 304, 401, 446, 534
SfaNI	GCATC	2 cut(s)	58, 386
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	4 cut(s)	176, 408, 453, 523
SspI	AATATT	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	120
TaqI	TCGA	3 cut(s)	99, 142, 370
TasI	AATT	1 cut(s)	157
TatI	WGTACW	2 cut(s)	114, 469
TfiI	GAWTC	3 cut(s)	222, 331, 496
Tru1I	TTAA	2 cut(s)	156, 354
Tru9I	TTAA	2 cut(s)	156, 354
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspGWI	ACGGA	2 cut(s)	256, 401
TspRI	CASTG	1 cut(s)	268
Van91I	CCANNNNNTGG	2 cut(s)	263, 410
VspI	ATTAAT	1 cut(s)	354
XceI	RCATGY	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	138
ZrmI	AGTACT	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.