Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002222

Physical Location & Seq

Genomic Coordinates Forward (+)

53374868 .. 53375326

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG401100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTAGAATTGCAGTTGATGTGGATCTGGGGTATGATAGGATCAAGGACCTCTATAAGGGTTGTGGCTGGTTATTTCATGGAGTGGAAGGGTGCGATCTGTTCATGACGATGCAAGCGGAAAAATCTAGGGGGTTGGAGGTGCCTACGGTTTCAGCGCCACTGGGACCAGGTCTGGCTATTTTGAAGAAAGTCGATGTAGTACTACATGGTCCTAAGGTTTCTGGAAACCCTAATGTTCCGTCTGTAGGGGCTGGAGACAAGGTGGTCTTACCGGCAGTGTTGCATGGCAACAAGGATAAGGGTCTGAAGGTTCTGGGATCAGAGCTTCCACTGATGCATGATCTGACGAAGCGTAAGAAGTCTCAGGGTAGGGATGGTACTCTTCGCACTGAACAGGGATGCTCTTATGCAGTAGCCCAATTTCCTTGGGGTGACTCTCTTCTCTGTGAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.25

Weight (kDa)

8.34

Isoelectric Point (pI)

26.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19660 AT5G19660 AT5G19660
fragaria_vesca	FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670
malus_domestica	MD02G1045500.v1.1 MD15G1183900.v1.1
prunus_persica	Prupe.7G232300_v2.0.a1 Prupe.7G232300_v2.0.a1
pyrus_communis	pycom02g03790 pycom02g03800 pycom02g03810 pycom15g16550
rosa_chinensis	RchiOBHm_Chr2g0090281
rosa_laevigata	RLG00000008526 RLG00000016094 RLG00000021848 RLG00000032088
rosa_multiflora	Rmu_sc0000714.1_g000011 Rmu_sc0004834.1_g000013 Rmu_sc0005276.1_g000005
rosa_roxburghii	Rroxscaffold_2G00085240 Rroxscaffold_2G00151320
rosa_rugosa	Rorug02G0006200
rosa_samantha	Rh1DG037900 Rh2AG052100 Rh2BG050700 Rh2CG052900 Rh2DG052000 Rh5AG367600 Rh5AG473400 Rh5BG377700 Rh5BG493700 Rh5CG401100 Rh5CG517700 Rh5DG391000 Rh5DG505700
rosa_wichuraiana	Rw2G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	142
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	3 cut(s)	33, 50, 328
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	204, 382
AfiI	CCNNNNNNNGG	2 cut(s)	58, 248
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	252, 369
AlwI	GGATC	3 cut(s)	33, 50, 328
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	3 cut(s)	49, 167, 212
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	3 cut(s)	49, 167, 212
AxyI	CCTNAGG	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	142
BccI	CCATC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	252, 369
BfaI	CTAG	2 cut(s)	6, 129
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	161
BmcAI	AGTACT	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	3 cut(s)	49, 167, 212
BmgT120I	GGNCC	3 cut(s)	49, 167, 212
BmiI	GGNNCC	2 cut(s)	144, 168
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	3 cut(s)	102, 327, 392
BmuI	ACTGGG	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 248
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	168
Bse21I	CCTNAGG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	2 cut(s)	382, 407
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	58, 248
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	58, 248
BsmAI	GTCTC	2 cut(s)	252, 369
BsmFI	GGGAC	1 cut(s)	180
Bsp143I	GATC	5 cut(s)	25, 42, 97, 320, 343
BspACI	CCGC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	144, 168
BspPI	GGATC	3 cut(s)	33, 50, 328
BspT107I	GGYRCC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	5 cut(s)	25, 42, 97, 320, 343
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	2 cut(s)	390, 447
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	216, 366
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	382, 407
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	5 cut(s)	28, 45, 100, 323, 346
BstMAI	GTCTC	2 cut(s)	252, 369
BstMBI	GATC	5 cut(s)	25, 42, 97, 320, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
Bsu36I	CCTNAGG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	382, 407
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	4 cut(s)	161, 285, 332, 390
Cac8I	GCNNGC	1 cut(s)	117
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	3 cut(s)	49, 167, 212
CsiI	ACCWGGT	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	203, 381
CviAII	CATG	5 cut(s)	80, 106, 209, 287, 341
CviJI	RGCY	6 cut(s)	5, 69, 179, 254, 328, 419
CviKI_1	RGCY	6 cut(s)	5, 69, 179, 254, 328, 419
CviQI	GTAC	2 cut(s)	203, 381
DdeI	CTNAG	2 cut(s)	216, 366
DpnI	GATC	5 cut(s)	27, 44, 99, 322, 345
DpnII	GATC	5 cut(s)	25, 42, 97, 320, 343
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	2 cut(s)	390, 447
EarI	CTCTTC	2 cut(s)	390, 447
Eco130I	CCWWGG	1 cut(s)	428
Eco47I	GGWCC	3 cut(s)	49, 167, 212
Eco57I	CTGAAG	1 cut(s)	329
Eco81I	CCTNAGG	1 cut(s)	216
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	428
EcoT22I	ATGCAT	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	5 cut(s)	83, 109, 212, 290, 344
FaiI	YATR	9 cut(s)	36, 57, 81, 107, 210, 288, 342, 411, 457
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	5 cut(s)	79, 105, 208, 286, 340
FokI	GGATG	2 cut(s)	389, 414
FspBI	CTAG	2 cut(s)	6, 129
GlaI	GCGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	161
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	5 cut(s)	83, 109, 212, 290, 344
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	437
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	446
Hpy188I	TCNGA	3 cut(s)	309, 325, 348
Hpy188III	TCNNGA	2 cut(s)	106, 225
HpyAV	CCTTC	2 cut(s)	83, 304
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	5 cut(s)	14, 115, 286, 340, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	216, 366
Hsp92II	CATG	5 cut(s)	83, 109, 212, 290, 344
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	5 cut(s)	25, 42, 97, 320, 343
LweI	GCATC	3 cut(s)	102, 327, 392
MabI	ACCWGGT	1 cut(s)	169
MaeI	CTAG	2 cut(s)	6, 129
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	5 cut(s)	27, 44, 99, 322, 345
MboI	GATC	5 cut(s)	25, 42, 97, 320, 343
MboII	GAAGA	3 cut(s)	199, 377, 434
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	2 cut(s)	9, 422
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	2 cut(s)	62, 133
Mph1103I	ATGCAT	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	5 cut(s)	25, 42, 97, 320, 343
NlaIII	CATG	5 cut(s)	83, 109, 212, 290, 344
NlaIV	GGNNCC	2 cut(s)	144, 168
NmuCI	GTSAC	1 cut(s)	434
NsiI	ATGCAT	1 cut(s)	342
PagI	TCATGA	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	171
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PpuMI	RGGWCCY	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	144, 168
PspPI	GGNCC	3 cut(s)	49, 167, 212
PspPPI	RGGWCCY	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	25
PsyI	GACNNNGTC	1 cut(s)	171
RsaI	GTAC	2 cut(s)	204, 382
RsaNI	GTAC	2 cut(s)	203, 381
RseI	CAYNNNNRTG	1 cut(s)	110
Sau3AI	GATC	5 cut(s)	25, 42, 97, 320, 343
Sau96I	GGNCC	3 cut(s)	49, 167, 212
ScaI	AGTACT	1 cut(s)	204
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	7 cut(s)	54, 144, 175, 222, 267, 315, 330
SexAI	ACCWGGT	1 cut(s)	169
SfaNI	GCATC	3 cut(s)	102, 327, 392
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	3 cut(s)	49, 167, 212
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	9, 422
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	2 cut(s)	6, 129
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	9, 422
TatI	WGTACW	1 cut(s)	202
TscAI	CASTG	4 cut(s)	168, 285, 339, 397
TseFI	GTSAC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	68, 94
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	4 cut(s)	168, 285, 339, 397
Tth111I	GACNNNGTC	1 cut(s)	171
VpaK11BI	GGWCC	3 cut(s)	49, 167, 212
XagI	CCTNNNNNAGG	1 cut(s)	56
XspI	CTAG	2 cut(s)	6, 129
ZrmI	AGTACT	1 cut(s)	204
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.