Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002222

Physical Location & Seq

Genomic Coordinates Reverse (-)

10795230 .. 10798506

Gene Structure 3277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032088

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGATGTTGTCGAATCACTTGCAAAATGGGATCAAGGCGCCGAAACTGGCCTGGTCTAGCCTCCCGAACTCAGATGAATCCGAGAATGACGTTGTTGGGTTAAGGAAGAAGGATGACGAGGGCGCCAGTTTAATTTGGGGTTTCTTGGAGCTTTGGATCATAAAGCATAGTGGTAGCAATCATAGTGACCTCTCCAAGCATGATGGCAGATCAAGCGGTGAGGTTGATGCTAGGGTTGTTGATGATTACATTCATTGGTTGAGCCTGAGTATAGCCAGAGATCCGACCGTGGTGTGGAGTGAGTGCGAGGCACATGCATGCCAGCTCCAAGTTCTTCTCAAGGGTTTGGGTTTGGTCTTTCCGAGGGCTTTAAGACTGGGCCGGAATGACGATGGAGCCAGGGAATTAGTGATTGTGGAGATTGGGAAATTGGGGATGGTGAAGGATGTGAATGCTGACGTCAGGTATAGGAAGGGTTTGCTTTGTGAGGACAAGAGGGATAAAGTTGTGGCCTTTGTGGATGGGGAGAAAGGGCCAGGGAAGATTTTAATGGCAATGTTGTTTAGTGAAGACGATGGAGCAGCGACGAGTAATGGTTCTGTTAGCTGGAAAAGGGAGCTCTTGGCTGAGAATTGGGAATTGGAATTAAGGGAGGCGGAAATTTCCCCAACCACTTCGGCCATCAAATTCAACCCCTCGACGGAGGTGGAGAAAGGAGAGGCGAAGTCGTCGACGTCGTCATCGTTAACGACGTCGTTTTGGGGAGAGGAGGACAGGTTGCCTTCGGCAACATCTTGGTCAGGGGCCATGGTAGTGATGGTTAAGATGAGGATGCCCAATTGTCATAACCAGACAAGGGCGGACACCCATCTCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005794 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006984 GO:0006986 GO:0006996 GO:0007033 GO:0007040 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008237 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0017171 GO:0019216 GO:0019218 GO:0019222 GO:0019538 GO:0023052 GO:0030968 GO:0031090 GO:0031293 GO:0031974 GO:0031984 GO:0033554 GO:0033619 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036500 GO:0042175 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045540 GO:0046890 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051716 GO:0062012 GO:0065007 GO:0070011 GO:0070013 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0080090 GO:0080171 GO:0090181 GO:0098588 GO:0098791 GO:0098827 GO:0106118 GO:0140096 GO:1901564 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Peptidase_S8

Protein Analysis

293

Amino Acids

32.23

Weight (kDa)

5.46

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19660 AT5G19660 AT5G19660
fragaria_vesca	FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670
malus_domestica	MD02G1045500.v1.1 MD15G1183900.v1.1
prunus_persica	Prupe.7G232300_v2.0.a1 Prupe.7G232300_v2.0.a1
pyrus_communis	pycom02g03790 pycom02g03800 pycom02g03810 pycom15g16550
rosa_chinensis	RchiOBHm_Chr2g0090281
rosa_laevigata	RLG00000008526 RLG00000016094 RLG00000021848 RLG00000032088
rosa_multiflora	Rmu_sc0000714.1_g000011 Rmu_sc0004834.1_g000013 Rmu_sc0005276.1_g000005
rosa_roxburghii	Rroxscaffold_2G00085240 Rroxscaffold_2G00151320
rosa_rugosa	Rorug02G0006200
rosa_samantha	Rh1DG037900 Rh2AG052100 Rh2BG050700 Rh2CG052900 Rh2DG052000 Rh5AG367600 Rh5AG473400 Rh5BG377700 Rh5BG493700 Rh5CG401100 Rh5CG517700 Rh5DG391000 Rh5DG505700
rosa_wichuraiana	Rw2G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	462, 737, 755
AccB1I	GGYRCC	2 cut(s)	37, 122
AccI	GTMKAC	1 cut(s)	731
AciI	CCGC	3 cut(s)	216, 656, 860
AclWI	GGATC	3 cut(s)	38, 164, 275
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	2 cut(s)	660, 686
AcyI	GRCGYC	5 cut(s)	38, 123, 459, 734, 752
AfiI	CCNNNNNNNGG	3 cut(s)	294, 700, 856
AgsI	TTSAA	1 cut(s)	691
AjnI	CCWGG	3 cut(s)	50, 398, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	4 cut(s)	151, 325, 606, 619
AluI	AGCT	4 cut(s)	151, 325, 606, 619
Alw21I	GWGCWC	1 cut(s)	621
AlwI	GGATC	3 cut(s)	38, 164, 275
AoxI	GGCC	6 cut(s)	48, 379, 510, 533, 678, 804
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	2 cut(s)	660, 686
AspLEI	GCGC	2 cut(s)	40, 125
AspS9I	GGNCC	3 cut(s)	379, 533, 804
AsuHPI	GGTGA	2 cut(s)	230, 451
BanI	GGYRCC	2 cut(s)	37, 122
BanII	GRGCYC	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	8 cut(s)	197, 386, 430, 515, 569, 689, 811, 876
BcgI	CGANNNNNNTGC	3 cut(s)	35, 296, 330
BciT130I	CCWGG	3 cut(s)	52, 400, 537
BfaI	CTAG	2 cut(s)	57, 231
BfoI	RGCGCY	2 cut(s)	41, 126
BisI	GCNGC	1 cut(s)	582
BlsI	GCNGC	1 cut(s)	583
Bme1390I	CCNGG	3 cut(s)	52, 400, 537
BmgT120I	GGNCC	3 cut(s)	379, 533, 804
BmiI	GGNNCC	4 cut(s)	39, 124, 397, 805
BmrFI	CCNGG	3 cut(s)	52, 400, 537
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	2 cut(s)	217, 822
BmuI	ACTGGG	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	323
BsaHI	GRCGYC	5 cut(s)	38, 123, 459, 734, 752
BsaJI	CCNNGG	5 cut(s)	288, 362, 399, 536, 807
BsaXI	ACNNNNNCTCC	2 cut(s)	761, 791
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 700, 856
Bse1I	ACTGG	3 cut(s)	51, 126, 381
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	3 cut(s)	52, 400, 537
BseDI	CCNNGG	5 cut(s)	288, 362, 399, 536, 807
BseGI	GGATG	5 cut(s)	118, 441, 451, 526, 837
BseLI	CCNNNNNNNGG	3 cut(s)	294, 700, 856
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	3 cut(s)	84, 257, 618
BseNI	ACTGG	3 cut(s)	51, 126, 381
BseRI	GAGGAG	1 cut(s)	782
BseXI	GCAGC	1 cut(s)	593
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	6 cut(s)	50, 381, 512, 535, 680, 806
BshNI	GGYRCC	2 cut(s)	37, 122
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	294, 700, 856
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	6 cut(s)	50, 381, 512, 535, 680, 806
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	4 cut(s)	30, 156, 209, 280
Bsp19I	CCATGG	1 cut(s)	807
BspACI	CCGC	3 cut(s)	216, 656, 860
BspANI	GGCC	6 cut(s)	50, 381, 512, 535, 680, 806
BspCNI	CTCAG	3 cut(s)	83, 258, 619
BspLI	GGNNCC	4 cut(s)	39, 124, 397, 805
BspPI	GGATC	3 cut(s)	38, 164, 275
BspT107I	GGYRCC	2 cut(s)	37, 122
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	3 cut(s)	51, 126, 381
BssECI	CCNNGG	5 cut(s)	288, 362, 399, 536, 807
BssMI	GATC	4 cut(s)	30, 156, 209, 280
BssNI	GRCGYC	5 cut(s)	38, 123, 459, 734, 752
BssT1I	CCWWGG	1 cut(s)	807
Bst2UI	CCWGG	3 cut(s)	52, 400, 537
Bst4CI	ACNGT	1 cut(s)	289
BstACI	GRCGYC	5 cut(s)	38, 123, 459, 734, 752
BstC8I	GCNNGC	2 cut(s)	319, 323
BstDEI	CTNAG	3 cut(s)	70, 266, 627
BstDSI	CCRYGG	2 cut(s)	288, 807
BstF5I	GGATG	5 cut(s)	118, 441, 451, 526, 837
BstH2I	RGCGCY	2 cut(s)	41, 126
BstHHI	GCGC	2 cut(s)	40, 125
BstKTI	GATC	4 cut(s)	33, 159, 212, 283
BstMBI	GATC	4 cut(s)	30, 156, 209, 280
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstNI	CCWGG	3 cut(s)	52, 400, 537
BstNSI	RCATGY	2 cut(s)	317, 321
BstSCI	CCNGG	3 cut(s)	50, 398, 535
BstV1I	GCAGC	1 cut(s)	593
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	6 cut(s)	50, 381, 512, 535, 680, 806
BtgI	CCRYGG	2 cut(s)	288, 807
BtsCI	GGATG	5 cut(s)	118, 441, 451, 526, 837
Cac8I	GCNNGC	2 cut(s)	319, 323
CfoI	GCGC	2 cut(s)	40, 125
Cfr13I	GGNCC	3 cut(s)	379, 533, 804
CviAII	CATG	4 cut(s)	200, 314, 318, 808
DdeI	CTNAG	3 cut(s)	70, 266, 627
DinI	GGCGCC	2 cut(s)	39, 124
DpnI	GATC	4 cut(s)	32, 158, 211, 282
DpnII	GATC	4 cut(s)	30, 156, 209, 280
EaeI	YGGCCR	1 cut(s)	678
EciI	GGCGGA	2 cut(s)	671, 875
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	807
Eco24I	GRGCYC	1 cut(s)	621
Eco53kI	GAGCTC	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	619
EcoRII	CCWGG	3 cut(s)	50, 398, 535
EcoT14I	CCWWGG	1 cut(s)	807
EcoT22I	ATGCAT	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	621
EgeI	GGCGCC	2 cut(s)	39, 124
EheI	GGCGCC	2 cut(s)	39, 124
ErhI	CCWWGG	1 cut(s)	807
FaeI	CATG	4 cut(s)	203, 317, 321, 811
FatI	CATG	4 cut(s)	199, 313, 317, 807
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	1 cut(s)	582
FokI	GGATG	5 cut(s)	125, 448, 458, 533, 844
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	1 cut(s)	582
FspBI	CTAG	2 cut(s)	57, 231
GlaI	GCGC	2 cut(s)	39, 124
GluI	GCNGC	1 cut(s)	582
HaeII	RGCGCY	2 cut(s)	41, 126
HaeIII	GGCC	6 cut(s)	50, 381, 512, 535, 680, 806
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	2 cut(s)	40, 125
Hin1I	GRCGYC	5 cut(s)	38, 123, 459, 734, 752
Hin1II	CATG	4 cut(s)	203, 317, 321, 811
Hin6I	GCGC	2 cut(s)	38, 123
HinP1I	GCGC	2 cut(s)	38, 123
HincII	GTYRAC	2 cut(s)	732, 747
HindII	GTYRAC	2 cut(s)	732, 747
HinfI	GANTC	2 cut(s)	13, 77
HpaI	GTTAAC	1 cut(s)	747
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	2 cut(s)	230, 451
Hpy166II	GTNNAC	2 cut(s)	732, 747
Hpy188I	TCNGA	4 cut(s)	73, 82, 285, 363
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	2 cut(s)	732, 747
Hpy99I	CGWCG	7 cut(s)	589, 703, 733, 736, 739, 754, 757
HpyAV	CCTTC	4 cut(s)	103, 436, 466, 792
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	4 cut(s)	90, 459, 734, 752
HpyCH4V	TGCA	2 cut(s)	22, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	3 cut(s)	70, 266, 627
HpySE526I	ACGT	4 cut(s)	90, 459, 734, 752
Hsp92I	GRCGYC	5 cut(s)	38, 123, 459, 734, 752
Hsp92II	CATG	4 cut(s)	203, 317, 321, 811
HspAI	GCGC	2 cut(s)	38, 123
KasI	GGCGCC	2 cut(s)	37, 122
KspAI	GTTAAC	1 cut(s)	747
Kzo9I	GATC	4 cut(s)	30, 156, 209, 280
LmnI	GCTCC	5 cut(s)	148, 330, 395, 578, 616
Lsp1109I	GCAGC	1 cut(s)	593
LweI	GCATC	2 cut(s)	217, 822
MaeI	CTAG	2 cut(s)	57, 231
MaeII	ACGT	4 cut(s)	90, 459, 734, 752
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	4 cut(s)	32, 158, 211, 282
MboI	GATC	4 cut(s)	30, 156, 209, 280
MboII	GAAGA	4 cut(s)	118, 326, 553, 581
MfeI	CAATTG	1 cut(s)	838
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	9 cut(s)	132, 404, 428, 631, 638, 644, 660, 686, 838
Mly113I	GGCGCC	2 cut(s)	38, 123
MmeI	TCCRAC	1 cut(s)	308
Mph1103I	ATGCAT	1 cut(s)	319
MseI	TTAA	7 cut(s)	101, 131, 371, 548, 647, 746, 822
MslI	CAYNNNNRTG	2 cut(s)	316, 812
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	3 cut(s)	52, 400, 537
MunI	CAATTG	1 cut(s)	838
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	3 cut(s)	52, 400, 537
MwoI	GCNNNNNNNGC	1 cut(s)	213
NarI	GGCGCC	2 cut(s)	38, 123
NcoI	CCATGG	1 cut(s)	807
NdeII	GATC	4 cut(s)	30, 156, 209, 280
NlaIII	CATG	4 cut(s)	203, 317, 321, 811
NlaIV	GGNNCC	4 cut(s)	39, 124, 397, 805
NmuCI	GTSAC	1 cut(s)	185
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	2 cut(s)	317, 321
PaeI	GCATGC	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	3 cut(s)	734, 740, 749
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	13, 77
PflFI	GACNNNGTC	1 cut(s)	736
PkrI	GCNGC	1 cut(s)	583
PluTI	GGCGCC	2 cut(s)	41, 126
Psp124BI	GAGCTC	1 cut(s)	621
Psp6I	CCWGG	3 cut(s)	50, 398, 535
PspGI	CCWGG	3 cut(s)	50, 398, 535
PspN4I	GGNNCC	4 cut(s)	39, 124, 397, 805
PspPI	GGNCC	3 cut(s)	379, 533, 804
PsuI	RGATCY	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	736
RseI	CAYNNNNRTG	2 cut(s)	316, 812
SacI	GAGCTC	1 cut(s)	621
SalI	GTCGAC	1 cut(s)	730
SaqAI	TTAA	7 cut(s)	101, 131, 371, 548, 647, 746, 822
SatI	GCNGC	1 cut(s)	582
Sau3AI	GATC	4 cut(s)	30, 156, 209, 280
Sau96I	GGNCC	3 cut(s)	379, 533, 804
ScrFI	CCNGG	3 cut(s)	52, 400, 537
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	2 cut(s)	217, 822
SfoI	GGCGCC	2 cut(s)	39, 124
SgrDI	CGTCGACG	1 cut(s)	730
SmiMI	CAYNNNNRTG	2 cut(s)	316, 812
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SphI	GCATGC	1 cut(s)	321
Sse9I	AATT	9 cut(s)	132, 404, 428, 631, 638, 644, 660, 686, 838
SsiI	CCGC	3 cut(s)	216, 656, 860
SspDI	GGCGCC	2 cut(s)	37, 122
SspMI	CTAG	2 cut(s)	57, 231
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	3 cut(s)	50, 398, 535
StyI	CCWWGG	1 cut(s)	807
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	4 cut(s)	93, 462, 737, 755
TaqI	TCGA	3 cut(s)	11, 698, 731
TasI	AATT	9 cut(s)	132, 404, 428, 631, 638, 644, 660, 686, 838
TfiI	GAWTC	2 cut(s)	13, 77
Tru1I	TTAA	7 cut(s)	101, 131, 371, 548, 647, 746, 822
Tru9I	TTAA	7 cut(s)	101, 131, 371, 548, 647, 746, 822
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	90, 242
TspGWI	ACGGA	1 cut(s)	716
Tth111I	GACNNNGTC	1 cut(s)	736
XapI	RAATTY	2 cut(s)	660, 686
XceI	RCATGY	2 cut(s)	317, 321
XcmI	CCANNNNNNNNNTGG	1 cut(s)	814
XmiI	GTMKAC	1 cut(s)	731
XspI	CTAG	2 cut(s)	57, 231
ZraI	GACGTC	3 cut(s)	460, 735, 753
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.