RLG00000021848

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002222
Physical Location & Seq
Forward (+)
78802687 .. 78803140
454 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021848

Sequence Viewer

Length: 369 bp
ATGGTTGCTTTTAGGGTTCATGGTTGGCCTTTGGGCTCTTGGCTTGCAGTTTTGAACCAACTACTACTATACTACAACCTCGCAAAGGTATTTCTCGTCCGGCGGTGGCGGCGCCCCATCATTAGAGGTCGCCTTGGCCATGCTGATGGTGTGATGCTTCACGCTGTCGGACGGGTATTGCTCTCTATTGCAGGCCTAAGGCCTTCTGGGAGTGTCGGGCTTGGAGATTGCAGTAGAGAAGTCGAATGGAGTTCCAGACCTGCGATTTCATGGCTATGGTGGTTGCAGGCACTGATTCACAGAATGGCTTTTTGTGCAAATACTAGCGGCGGCGACATCGGTTGGAGTTGTGGCAGTTTTGGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.6

Weight (kDa)

10.69

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 111
AciI CCGC 4 cut(s) 103, 109, 327, 330
AcoI YGGCCR 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 1 cut(s) 55
AlwNI CAGNNNCTG 1 cut(s) 292
AoxI GGCC 4 cut(s) 26, 136, 193, 200
AspLEI GCGC 1 cut(s) 114
AxyI CCTNAGG 1 cut(s) 197
BalI TGGCCA 1 cut(s) 138
BanI GGYRCC 1 cut(s) 111
BanII GRGCYC 1 cut(s) 38
BccI CCATC 2 cut(s) 125, 140
BfaI CTAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 115
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 3 cut(s) 110, 328, 331
BlsI GCNGC 3 cut(s) 111, 329, 332
BmiI GGNNCC 1 cut(s) 113
BmsI GCATC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse21I CCTNAGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 85
BshFI GGCC 4 cut(s) 28, 138, 195, 202
BshNI GGYRCC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 85
BsnI GGCC 4 cut(s) 28, 138, 195, 202
Bsp1286I GDGCHC 1 cut(s) 38
BspACI CCGC 4 cut(s) 103, 109, 327, 330
BspANI GGCC 4 cut(s) 28, 138, 195, 202
BspLI GGNNCC 1 cut(s) 113
BspMI ACCTGC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 133
BssNI GRCGYC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 133
BstACI GRCGYC 1 cut(s) 112
BstC8I GCNNGC 3 cut(s) 45, 193, 288
BstDEI CTNAG 1 cut(s) 197
BstENI CCTNNNNNAGG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstMWI GCNNNNNNNGC 2 cut(s) 109, 314
BstXI CCANNNNNNTGG 1 cut(s) 146
Bsu36I CCTNAGG 1 cut(s) 197
BsuRI GGCC 4 cut(s) 28, 138, 195, 202
BtsIMutI CAGTG 1 cut(s) 290
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 3 cut(s) 45, 193, 288
CaiI CAGNNNCTG 1 cut(s) 292
CfoI GCGC 1 cut(s) 114
CviAII CATG 3 cut(s) 20, 140, 270
CviJI RGCY 9 cut(s) 28, 36, 43, 138, 195, 202, 220, 274, 308
CviKI_1 RGCY 9 cut(s) 28, 36, 43, 138, 195, 202, 220, 274, 308
DdeI CTNAG 1 cut(s) 197
DinI GGCGCC 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 133
Eco147I AGGCCT 2 cut(s) 195, 202
Eco24I GRGCYC 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 38
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 3 cut(s) 23, 143, 273
FaiI YATR 5 cut(s) 21, 70, 141, 271, 277
FatI CATG 3 cut(s) 19, 139, 269
Fnu4HI GCNGC 3 cut(s) 110, 328, 331
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 110, 328, 331
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 113
GluI GCNGC 3 cut(s) 110, 328, 331
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 4 cut(s) 28, 138, 195, 202
HapII CCGG 1 cut(s) 100
HhaI GCGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 3 cut(s) 23, 143, 273
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 295
HpaII CCGG 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 255
HpyAV CCTTC 1 cut(s) 213
HpyCH4V TGCA 5 cut(s) 47, 191, 231, 286, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 314
HpyF3I CTNAG 1 cut(s) 197
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 3 cut(s) 23, 143, 273
HspAI GCGC 1 cut(s) 112
KasI GGCGCC 1 cut(s) 111
LpnPI CCDG 6 cut(s) 113, 177, 192, 268, 272, 273
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 138
MluNI TGGCCA 1 cut(s) 138
Mly113I GGCGCC 1 cut(s) 112
MmeI TCCRAC 2 cut(s) 148, 323
MnlI CCTC 2 cut(s) 89, 119
Mox20I TGGCCA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 138
MslI CAYNNNNRTG 2 cut(s) 144, 274
Msp20I TGGCCA 1 cut(s) 138
MspI CCGG 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 109, 314
NarI GGCGCC 1 cut(s) 112
NlaIII CATG 3 cut(s) 23, 143, 273
NlaIV GGNNCC 1 cut(s) 113
PceI AGGCCT 2 cut(s) 195, 202
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 3 cut(s) 111, 329, 332
PluTI GGCGCC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 144, 274
SatI GCNGC 3 cut(s) 110, 328, 331
SduI GDGCHC 1 cut(s) 38
SetI ASST 4 cut(s) 81, 90, 130, 262
SfaNI GCATC 1 cut(s) 144
SfoI GGCGCC 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 144, 274
SseBI AGGCCT 2 cut(s) 195, 202
SsiI CCGC 4 cut(s) 103, 109, 327, 330
SspDI GGCGCC 1 cut(s) 111
SspMI CTAG 1 cut(s) 324
StuI AGGCCT 2 cut(s) 195, 202
StyI CCWWGG 1 cut(s) 133
TaqI TCGA 1 cut(s) 243
TauI GCSGC 3 cut(s) 112, 330, 333
TfiI GAWTC 1 cut(s) 295
TscAI CASTG 1 cut(s) 297
TspDTI ATGAA 2 cut(s) 8, 258
TspRI CASTG 1 cut(s) 297
XagI CCTNNNNNAGG 1 cut(s) 83
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.