Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002222

Physical Location & Seq

Genomic Coordinates Forward (+)

61051134 .. 61055462

Gene Structure 4329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG391000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCTAGATTGTCGTGTTCTTCATCAAGGGCTTTAAGACTAGGCCGGATTGACGATGGAGCCAGGGAATTGGTGATTGTGGAGATTGGGAAATTGGGGATGGTGAAGGATGTGAATGCTAACGTCAAGTATGGTAAGGGTTTACTTTGTGAGGACAAGAGGGATAAAGTTGTGGCCTTTGTGGATGGGGAGAAAGGGCTGGGGAAGATTTTAATGGCGATGTTGTTTAGTGAAGACGACGGAGTAGCGACAAGTAATGGTTTTGTTAGCTGGAAAAGGGAGCTCGTGGCTGAGGCGGAAAAATCTAGGGGGTTGGAGGTGCCTAAGGTTTCAACGCCACTGGGACCAGATCTGGCTATTTTGAAGAAAGTACTACTTGGAAACCCTAATGTTTTGTCTGTAGGGGCTGGAGACAAGGTGGTCTTACTAGCAGTGCTGCATGGCAACAAGGATAAGGGTCTGAAGGTTCTGGGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005794 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006984 GO:0006986 GO:0006996 GO:0007033 GO:0007040 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008237 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0017171 GO:0019216 GO:0019218 GO:0019222 GO:0019538 GO:0023052 GO:0030968 GO:0031090 GO:0031293 GO:0031974 GO:0031984 GO:0033554 GO:0033619 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036500 GO:0042175 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045540 GO:0046890 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051716 GO:0062012 GO:0065007 GO:0070011 GO:0070013 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0080090 GO:0080171 GO:0090181 GO:0098588 GO:0098791 GO:0098827 GO:0106118 GO:0140096 GO:1901564 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Peptidase_S8

Protein Analysis

159

Amino Acids

16.87

Weight (kDa)

9.25

Isoelectric Point (pI)

18.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19660 AT5G19660 AT5G19660
fragaria_vesca	FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670
malus_domestica	MD02G1045500.v1.1 MD15G1183900.v1.1
prunus_persica	Prupe.7G232300_v2.0.a1 Prupe.7G232300_v2.0.a1
pyrus_communis	pycom02g03790 pycom02g03800 pycom02g03810 pycom15g16550
rosa_chinensis	RchiOBHm_Chr2g0090281
rosa_laevigata	RLG00000008526 RLG00000016094 RLG00000021848 RLG00000032088
rosa_multiflora	Rmu_sc0000714.1_g000011 Rmu_sc0004834.1_g000013 Rmu_sc0005276.1_g000005
rosa_roxburghii	Rroxscaffold_2G00085240 Rroxscaffold_2G00151320
rosa_rugosa	Rorug02G0006200
rosa_samantha	Rh1DG037900 Rh2AG052100 Rh2BG050700 Rh2CG052900 Rh2DG052000 Rh5AG367600 Rh5AG473400 Rh5BG377700 Rh5BG493700 Rh5CG401100 Rh5CG517700 Rh5DG391000 Rh5DG505700
rosa_wichuraiana	Rw2G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AccB1I	GGYRCC	1 cut(s)	319
AciI	CCGC	1 cut(s)	296
AfaI	GTAC	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	333, 364
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	2 cut(s)	270, 283
AluI	AGCT	2 cut(s)	270, 283
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	405
AoxI	GGCC	2 cut(s)	43, 174
ApeKI	GCWGC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	85, 115
AvaII	GGWCC	1 cut(s)	344
AxyI	CCTNAGG	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	285
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	285
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	3 cut(s)	50, 94, 179
BciT130I	CCWGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	4 cut(s)	6, 41, 306, 428
BfmI	CTRYAG	1 cut(s)	399
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	438
BmcAI	AGTACT	1 cut(s)	372
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	3 cut(s)	61, 321, 345
BmrFI	CCNGG	1 cut(s)	64
BmrI	ACTGGG	1 cut(s)	350
BmuI	ACTGGG	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bse1I	ACTGG	1 cut(s)	345
Bse21I	CCTNAGG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	3 cut(s)	105, 115, 190
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	423
BseYI	CCCAGC	1 cut(s)	199
BshFI	GGCC	2 cut(s)	45, 176
BshNI	GGYRCC	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	45, 176
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	349, 473
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	2 cut(s)	45, 176
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	61, 321, 345
BspT107I	GGYRCC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	349, 473
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	291, 324
BstF5I	GGATG	3 cut(s)	105, 115, 190
BstKTI	GATC	2 cut(s)	352, 476
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	2 cut(s)	349, 473
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	423
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	349
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	45, 176
BtgZI	GCGATG	1 cut(s)	233
BtsCI	GGATG	3 cut(s)	105, 115, 190
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	2 cut(s)	338, 438
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	1 cut(s)	440
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	2 cut(s)	291, 324
DpnI	GATC	2 cut(s)	351, 475
DpnII	GATC	2 cut(s)	349, 473
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
EciI	GGCGGA	1 cut(s)	311
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	283
Eco81I	CCTNAGG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	1 cut(s)	443
FaiI	YATR	3 cut(s)	132, 441, 478
FalI	AAGNNNNNCTT	4 cut(s)	360, 392, 407, 439
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	1 cut(s)	439
Fnu4HI	GCNGC	1 cut(s)	437
FokI	GGATG	3 cut(s)	112, 122, 197
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	437
FspBI	CTAG	4 cut(s)	6, 41, 306, 428
GluI	GCNGC	1 cut(s)	437
GsaI	CCCAGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	45, 176
HapII	CCGG	1 cut(s)	46
Hin1II	CATG	1 cut(s)	443
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	2 cut(s)	85, 115
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	462
Hpy188III	TCNNGA	1 cut(s)	6
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	100, 457
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	439
HpyF3I	CTNAG	2 cut(s)	291, 324
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	443
Kzo9I	GATC	2 cut(s)	349, 473
LmnI	GCTCC	2 cut(s)	59, 280
Lsp1109I	GCAGC	1 cut(s)	423
MaeI	CTAG	4 cut(s)	6, 41, 306, 428
MaeII	ACGT	1 cut(s)	123
MalI	GATC	2 cut(s)	351, 475
MboI	GATC	2 cut(s)	349, 473
MboII	GAAGA	4 cut(s)	12, 217, 245, 376
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	2 cut(s)	68, 92
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	4 cut(s)	145, 153, 286, 310
MseI	TTAA	2 cut(s)	35, 212
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	64
NdeII	GATC	2 cut(s)	349, 473
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	3 cut(s)	61, 321, 345
PctI	GAATGC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	3 cut(s)	61, 321, 345
PspPI	GGNCC	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	35, 212
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	2 cut(s)	349, 473
Sau96I	GGNCC	1 cut(s)	344
ScaI	AGTACT	1 cut(s)	372
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	126, 272, 285, 321, 330, 420, 468
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	344
Sse9I	AATT	2 cut(s)	68, 92
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	4 cut(s)	6, 41, 306, 428
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	62
TaiI	ACGT	1 cut(s)	126
TasI	AATT	2 cut(s)	68, 92
TatI	WGTACW	1 cut(s)	370
Tru1I	TTAA	2 cut(s)	35, 212
Tru9I	TTAA	2 cut(s)	35, 212
TscAI	CASTG	2 cut(s)	345, 438
TseI	GCWGC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	12
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	2 cut(s)	345, 438
VpaK11BI	GGWCC	1 cut(s)	344
XbaI	TCTAGA	1 cut(s)	5
XspI	CTAG	4 cut(s)	6, 41, 306, 428
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.