Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004834.1

Orthogroup ID

OG0002222

Physical Location & Seq

Genomic Coordinates Forward (+)

40022 .. 40669

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004834.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgtctagattgtcgtgttcttcatcaagggctttaagactaggccggattgacgatggagccagggaattagtgattgtggagattgggaaattagggatggtgaaggatgtgaatgctaacgtcaggtatggtaagggtttactttgtgaggacaagagggataaagttgtggcctttgtggatggggagaaagggctggggaagattttaatggcgatgttgtttagtgaagacgacggagtagcgacaagtaatggttttgttagctggaaaagggagctcttggctgagagttgggaattggacttaagggaggcgacaattaccccaaccactctggccatcaaattcaacccctcgacggaggtgacgccatcggaggtggagaaaggagaggcgaagtcgtcgacgtcgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005794 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006984 GO:0006986 GO:0006996 GO:0007033 GO:0007040 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008237 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0017171 GO:0019216 GO:0019218 GO:0019222 GO:0019538 GO:0023052 GO:0030968 GO:0031090 GO:0031293 GO:0031974 GO:0031984 GO:0033554 GO:0033619 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036500 GO:0042175 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045540 GO:0046890 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051716 GO:0062012 GO:0065007 GO:0070011 GO:0070013 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0080090 GO:0080171 GO:0090181 GO:0098588 GO:0098791 GO:0098827 GO:0106118 GO:0140096 GO:1901564 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Peptidase_S8

Protein Analysis

140

Amino Acids

15.29

Weight (kDa)

5.32

Isoelectric Point (pI)

30.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19660 AT5G19660 AT5G19660
fragaria_vesca	FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670
malus_domestica	MD02G1045500.v1.1 MD15G1183900.v1.1
prunus_persica	Prupe.7G232300_v2.0.a1 Prupe.7G232300_v2.0.a1
pyrus_communis	pycom02g03790 pycom02g03800 pycom02g03810 pycom15g16550
rosa_chinensis	RchiOBHm_Chr2g0090281
rosa_laevigata	RLG00000008526 RLG00000016094 RLG00000021848 RLG00000032088
rosa_multiflora	Rmu_sc0000714.1_g000011 Rmu_sc0004834.1_g000013 Rmu_sc0005276.1_g000005
rosa_roxburghii	Rroxscaffold_2G00085240 Rroxscaffold_2G00151320
rosa_rugosa	Rorug02G0006200
rosa_samantha	Rh1DG037900 Rh2AG052100 Rh2BG050700 Rh2CG052900 Rh2DG052000 Rh5AG367600 Rh5AG473400 Rh5BG377700 Rh5BG493700 Rh5CG401100 Rh5CG517700 Rh5DG391000 Rh5DG505700
rosa_wichuraiana	Rw2G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	410
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	2 cut(s)	374, 413
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflII	CTTAAG	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	2 cut(s)	270, 283
AluI	AGCT	2 cut(s)	270, 283
Alw21I	GWGCWC	1 cut(s)	285
AoxI	GGCC	3 cut(s)	43, 174, 342
ApoI	RAATTY	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	115, 382
BalI	TGGCCA	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	285
BccI	CCATC	5 cut(s)	50, 94, 179, 353, 385
BciT130I	CCWGG	1 cut(s)	64
BfaI	CTAG	2 cut(s)	6, 41
BfrI	CTTAAG	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	240
BsaHI	GRCGYC	2 cut(s)	374, 413
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	3 cut(s)	105, 115, 190
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	282
BseYI	CCCAGC	1 cut(s)	199
BshFI	GGCC	3 cut(s)	45, 176, 344
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	3 cut(s)	45, 176, 344
Bsp1286I	GDGCHC	1 cut(s)	285
BspANI	GGCC	3 cut(s)	45, 176, 344
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	61
BspTI	CTTAAG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	63
BssNI	GRCGYC	2 cut(s)	374, 413
Bst2UI	CCWGG	1 cut(s)	64
BstACI	GRCGYC	2 cut(s)	374, 413
BstAFI	CTTAAG	1 cut(s)	310
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	105, 115, 190
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	45, 176, 344
BtgZI	GCGATG	1 cut(s)	233
BtsCI	GGATG	3 cut(s)	105, 115, 190
CseI	GACGC	1 cut(s)	382
CviJI	RGCY	9 cut(s)	32, 45, 62, 176, 199, 270, 283, 290, 344
CviKI_1	RGCY	9 cut(s)	32, 45, 62, 176, 199, 270, 283, 290, 344
DdeI	CTNAG	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	342
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	285
FaiI	YATR	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	410
FokI	GGATG	3 cut(s)	112, 122, 197
FriOI	GRGCYC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	6, 41
GsaI	CCCAGC	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	45, 176, 344
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	1 cut(s)	382
Hin1I	GRCGYC	2 cut(s)	374, 413
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	2 cut(s)	115, 382
Hpy166II	GTNNAC	2 cut(s)	143, 411
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	1 cut(s)	6
Hpy8I	GTNNAC	2 cut(s)	143, 411
Hpy99I	CGWCG	5 cut(s)	242, 367, 412, 415, 418
HpyAV	CCTTC	1 cut(s)	100
HpyCH4IV	ACGT	2 cut(s)	123, 413
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	2 cut(s)	123, 413
Hsp92I	GRCGYC	2 cut(s)	374, 413
LmnI	GCTCC	2 cut(s)	59, 280
LpnPI	CCDG	7 cut(s)	49, 59, 76, 112, 185, 256, 326
MaeI	CTAG	2 cut(s)	6, 41
MaeII	ACGT	2 cut(s)	123, 413
MaeIII	GTNAC	1 cut(s)	370
MboII	GAAGA	3 cut(s)	12, 217, 245
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	5 cut(s)	68, 92, 302, 324, 350
MluNI	TGGCCA	1 cut(s)	344
MnlI	CCTC	7 cut(s)	145, 153, 310, 361, 370, 376, 391
Mox20I	TGGCCA	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	344
MseI	TTAA	3 cut(s)	35, 212, 311
Msp20I	TGGCCA	1 cut(s)	344
MspCI	CTTAAG	1 cut(s)	310
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PctI	GAATGC	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	409
SaqAI	TTAA	3 cut(s)	35, 212, 311
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	126, 131, 272, 285, 372, 387, 416
SgrDI	CGTCGACG	1 cut(s)	409
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	5 cut(s)	68, 92, 302, 324, 350
SspMI	CTAG	2 cut(s)	6, 41
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	62
TaiI	ACGT	2 cut(s)	126, 416
TaqI	TCGA	2 cut(s)	362, 410
TasI	AATT	5 cut(s)	68, 92, 302, 324, 350
Tru1I	TTAA	3 cut(s)	35, 212, 311
Tru9I	TTAA	3 cut(s)	35, 212, 311
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	12
TspGWI	ACGGA	2 cut(s)	255, 380
Vha464I	CTTAAG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	350
XbaI	TCTAGA	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	410
XspI	CTAG	2 cut(s)	6, 41
ZraI	GACGTC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.