Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000714.1

Orthogroup ID

OG0002222

Physical Location & Seq

Genomic Coordinates Reverse (-)

37426 .. 38277

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000714.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgtccagattgttgtgctcttcatcaagggctttaagactgggccggattgacgatagagctagggaattggtgattgtggagattgggaaattggggacggtgaaggatgtgaatgctgacgtcaagtatgggaagggtttgctttgtgaggacaagagggataaagttgtggcctttatggatggggagaaagggtcggggaagattttaatggcgatgttgtttagtgaagacgacggagtagcgacgagtaatggttctgttagctggaaaagggagctcttggctgagctggagtttctctttgtgattttcttgactggtaaaactggagtatttttttttctctcattttttggaaaatttaaagaattgggaattggaattaagggaggcggcaatttccccaaccactgccgtgaaattgcaaaatcactggcaatttctgactcttcttggttgaattcaccggcgagtaccctttgtagacttcggagccgactcatcaaattcatcccctcgacggaggtgacgccatcggaggtggaggaaaggagaggtgaagtcgtcgacgccgtcatcgtcaacgacgtcgttttggggagaggaggacaggttgccttcgccatcgtcttggtcgggggccatggtagtggtgaggcaatgagagagagagagagagagagagagagagagatgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005794 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006984 GO:0006986 GO:0006996 GO:0007033 GO:0007040 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008237 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0017171 GO:0019216 GO:0019218 GO:0019222 GO:0019538 GO:0023052 GO:0030968 GO:0031090 GO:0031293 GO:0031974 GO:0031984 GO:0033554 GO:0033619 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036500 GO:0042175 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045540 GO:0046890 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051716 GO:0062012 GO:0065007 GO:0070011 GO:0070013 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0080090 GO:0080171 GO:0090181 GO:0098588 GO:0098791 GO:0098827 GO:0106118 GO:0140096 GO:1901564 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Peptidase_S8

Protein Analysis

235

Amino Acids

25.87

Weight (kDa)

8.34

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19660 AT5G19660 AT5G19660
fragaria_vesca	FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670
malus_domestica	MD02G1045500.v1.1 MD15G1183900.v1.1
prunus_persica	Prupe.7G232300_v2.0.a1 Prupe.7G232300_v2.0.a1
pyrus_communis	pycom02g03790 pycom02g03800 pycom02g03810 pycom15g16550
rosa_chinensis	RchiOBHm_Chr2g0090281
rosa_laevigata	RLG00000008526 RLG00000016094 RLG00000021848 RLG00000032088
rosa_multiflora	Rmu_sc0000714.1_g000011 Rmu_sc0004834.1_g000013 Rmu_sc0005276.1_g000005
rosa_roxburghii	Rroxscaffold_2G00085240 Rroxscaffold_2G00151320
rosa_rugosa	Rorug02G0006200
rosa_samantha	Rh1DG037900 Rh2AG052100 Rh2BG050700 Rh2CG052900 Rh2DG052000 Rh5AG367600 Rh5AG473400 Rh5BG377700 Rh5BG493700 Rh5CG401100 Rh5CG517700 Rh5DG391000 Rh5DG505700
rosa_wichuraiana	Rw2G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	126, 597
AccI	GTMKAC	2 cut(s)	490, 573
AciI	CCGC	1 cut(s)	399
AcsI	RAATTY	3 cut(s)	365, 466, 512
AcyI	GRCGYC	4 cut(s)	123, 536, 576, 594
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	1 cut(s)	466
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	4 cut(s)	62, 270, 283, 295
AluI	AGCT	4 cut(s)	62, 270, 283, 295
Alw21I	GWGCWC	2 cut(s)	20, 285
AoxI	GGCC	3 cut(s)	43, 174, 646
ApoI	RAATTY	3 cut(s)	365, 466, 512
AspS9I	GGNCC	2 cut(s)	43, 646
AsuHPI	GGTGA	6 cut(s)	85, 115, 462, 544, 575, 671
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	20, 285
BccI	CCATC	3 cut(s)	179, 547, 638
BceAI	ACGGC	2 cut(s)	405, 563
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	1 cut(s)	400
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	43, 646
BmiI	GGNNCC	2 cut(s)	500, 647
BmrI	ACTGGG	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	2 cut(s)	317, 354
Bpu1102I	GCTNAGC	1 cut(s)	291
BsaHI	GRCGYC	4 cut(s)	123, 536, 576, 594
BsaJI	CCNNGG	1 cut(s)	649
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 603, 633
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	4 cut(s)	45, 328, 337, 444
Bse3DI	GCAATG	1 cut(s)	672
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	3 cut(s)	115, 190, 516
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	4 cut(s)	45, 328, 337, 444
BseRI	GAGGAG	1 cut(s)	624
BshFI	GGCC	3 cut(s)	45, 176, 648
BsiHKAI	GWGCWC	2 cut(s)	20, 285
BsiSI	CCGG	2 cut(s)	46, 473
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	3 cut(s)	45, 176, 648
Bsp1286I	GDGCHC	2 cut(s)	20, 285
Bsp1720I	GCTNAGC	1 cut(s)	291
Bsp19I	CCATGG	1 cut(s)	649
BspACI	CCGC	1 cut(s)	399
BspANI	GGCC	3 cut(s)	45, 176, 648
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	500, 647
BspQI	GCTCTTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	672
BsrFI	RCCGGY	1 cut(s)	472
BsrI	ACTGG	4 cut(s)	45, 328, 337, 444
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	1 cut(s)	649
BssNI	GRCGYC	4 cut(s)	123, 536, 576, 594
BssT1I	CCWWGG	1 cut(s)	649
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	2 cut(s)	25, 460
BstACI	GRCGYC	4 cut(s)	123, 536, 576, 594
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	649
BstF5I	GGATG	3 cut(s)	115, 190, 516
BstV2I	GAAGAC	1 cut(s)	240
BstXI	CCANNNNNNTGG	2 cut(s)	637, 656
BsuRI	GGCC	3 cut(s)	45, 176, 648
BtgI	CCRYGG	1 cut(s)	649
BtgZI	GCGATG	1 cut(s)	233
BtsCI	GGATG	3 cut(s)	115, 190, 516
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	2 cut(s)	415, 437
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	2 cut(s)	43, 646
CseI	GACGC	2 cut(s)	544, 584
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	1 cut(s)	650
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	1 cut(s)	291
DraI	TTTAAA	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	25, 460
EarI	CTCTTC	2 cut(s)	25, 460
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	649
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	649
FaeI	CATG	1 cut(s)	653
FaiI	YATR	3 cut(s)	132, 182, 651
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	1 cut(s)	649
FblI	GTMKAC	2 cut(s)	490, 573
Fnu4HI	GCNGC	1 cut(s)	400
FokI	GGATG	3 cut(s)	122, 197, 503
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	400
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	1 cut(s)	400
GsuI	CTGGAG	2 cut(s)	317, 354
HaeIII	GGCC	3 cut(s)	45, 176, 648
HapII	CCGG	2 cut(s)	46, 473
HgaI	GACGC	2 cut(s)	544, 584
Hin1I	GRCGYC	4 cut(s)	123, 536, 576, 594
Hin1II	CATG	1 cut(s)	653
HincII	GTYRAC	2 cut(s)	574, 589
HindII	GTYRAC	2 cut(s)	574, 589
HinfI	GANTC	2 cut(s)	452, 504
HpaII	CCGG	2 cut(s)	46, 473
HphI	GGTGA	6 cut(s)	85, 115, 462, 544, 575, 671
Hpy166II	GTNNAC	3 cut(s)	491, 574, 589
Hpy188I	TCNGA	3 cut(s)	451, 498, 544
Hpy188III	TCNNGA	2 cut(s)	6, 319
Hpy8I	GTNNAC	3 cut(s)	491, 574, 589
Hpy99I	CGWCG	7 cut(s)	242, 253, 529, 575, 578, 596, 599
HpyAV	CCTTC	3 cut(s)	100, 130, 634
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	2 cut(s)	123, 594
HpyCH4V	TGCA	1 cut(s)	431
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	2 cut(s)	123, 594
Hsp92I	GRCGYC	4 cut(s)	123, 536, 576, 594
Hsp92II	CATG	1 cut(s)	653
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	280, 498
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	2 cut(s)	123, 594
MaeIII	GTNAC	1 cut(s)	532
MboII	GAAGA	4 cut(s)	12, 217, 245, 447
MhlI	GDGCHC	2 cut(s)	20, 285
MlyI	GAGTC	2 cut(s)	446, 498
MseI	TTAA	4 cut(s)	35, 212, 369, 390
MslI	CAYNNNNRTG	2 cut(s)	420, 654
MspI	CCGG	2 cut(s)	46, 473
Mva1269I	GAATGC	1 cut(s)	121
NcoI	CCATGG	1 cut(s)	649
NlaIII	CATG	1 cut(s)	653
NlaIV	GGNNCC	2 cut(s)	500, 647
NmuCI	GTSAC	1 cut(s)	532
OliI	CACNNNNGTG	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	3 cut(s)	576, 582, 591
PctI	GAATGC	1 cut(s)	121
PflFI	GACNNNGTC	1 cut(s)	578
PkrI	GCNGC	1 cut(s)	401
PleI	GAGTC	2 cut(s)	446, 498
PpsI	GAGTC	2 cut(s)	446, 498
Psp124BI	GAGCTC	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	500, 647
PspPI	GGNCC	2 cut(s)	43, 646
PsyI	GACNNNGTC	1 cut(s)	578
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
RseI	CAYNNNNRTG	2 cut(s)	420, 654
SacI	GAGCTC	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	572
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	4 cut(s)	35, 212, 369, 390
SatI	GCNGC	1 cut(s)	400
Sau96I	GGNCC	2 cut(s)	43, 646
SchI	GAGTC	2 cut(s)	446, 498
SduI	GDGCHC	2 cut(s)	20, 285
SgrAI	CRCCGGYG	1 cut(s)	472
SgrDI	CGTCGACG	1 cut(s)	572
SmiMI	CAYNNNNRTG	2 cut(s)	420, 654
SsiI	CCGC	1 cut(s)	399
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	649
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	2 cut(s)	126, 597
TaqI	TCGA	2 cut(s)	524, 573
TauI	GCSGC	1 cut(s)	402
Tru1I	TTAA	4 cut(s)	35, 212, 369, 390
Tru9I	TTAA	4 cut(s)	35, 212, 369, 390
TscAI	CASTG	2 cut(s)	422, 444
TseFI	GTSAC	1 cut(s)	532
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	2 cut(s)	12, 505
TspGWI	ACGGA	2 cut(s)	255, 542
TspRI	CASTG	2 cut(s)	422, 444
Tth111I	GACNNNGTC	1 cut(s)	578
XapI	RAATTY	3 cut(s)	365, 466, 512
XmiI	GTMKAC	2 cut(s)	490, 573
XspI	CTAG	1 cut(s)	63
ZraI	GACGTC	2 cut(s)	124, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.