Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002222

Physical Location & Seq

Genomic Coordinates Forward (+)

6081697 .. 6086976

Gene Structure 5280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG037900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTCTAGATTGTCGTGCTCTTCATCAAGGGCTTTAAGACTGGGCCGGATTGACAATGGAGCCAGGGAATGGGTGATTGTGGAGATTGGGAAATTGGGGATGGTGAAGGATGTGAATGCTGACGTCAGGTATGGGAAGGGTTTGCTTTGTGAGGACAAGAGGGATAAAGTTGTGGCCTTTGTGGATAGGGAGAAAGGGCTGGGGAAGATTTTAATGGCGATGTTGTTTAGTGAAGACGACGGAGCAGCGACAAGTAATGGTTCTGTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005794 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006984 GO:0006986 GO:0006996 GO:0007033 GO:0007040 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008237 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0017171 GO:0019216 GO:0019218 GO:0019222 GO:0019538 GO:0023052 GO:0030968 GO:0031090 GO:0031293 GO:0031974 GO:0031984 GO:0033554 GO:0033619 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036500 GO:0042175 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045540 GO:0046890 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051716 GO:0062012 GO:0065007 GO:0070011 GO:0070013 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0080090 GO:0080171 GO:0090181 GO:0098588 GO:0098791 GO:0098827 GO:0106118 GO:0140096 GO:1901564 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Peptidase_S8

Protein Analysis

90

Amino Acids

9.76

Weight (kDa)

8.68

Isoelectric Point (pI)

21.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19660 AT5G19660 AT5G19660
fragaria_vesca	FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670
malus_domestica	MD02G1045500.v1.1 MD15G1183900.v1.1
prunus_persica	Prupe.7G232300_v2.0.a1 Prupe.7G232300_v2.0.a1
pyrus_communis	pycom02g03790 pycom02g03800 pycom02g03810 pycom15g16550
rosa_chinensis	RchiOBHm_Chr2g0090281
rosa_laevigata	RLG00000008526 RLG00000016094 RLG00000021848 RLG00000032088
rosa_multiflora	Rmu_sc0000714.1_g000011 Rmu_sc0004834.1_g000013 Rmu_sc0005276.1_g000005
rosa_roxburghii	Rroxscaffold_2G00085240 Rroxscaffold_2G00151320
rosa_rugosa	Rorug02G0006200
rosa_samantha	Rh1DG037900 Rh2AG052100 Rh2BG050700 Rh2CG052900 Rh2DG052000 Rh5AG367600 Rh5AG473400 Rh5BG377700 Rh5BG493700 Rh5CG401100 Rh5CG517700 Rh5DG391000 Rh5DG505700
rosa_wichuraiana	Rw2G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
Alw21I	GWGCWC	1 cut(s)	20
AoxI	GGCC	2 cut(s)	43, 174
ApeKI	GCWGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	85, 115
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	64
BfaI	CTAG	2 cut(s)	6, 271
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	64
BmrI	ACTGGG	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	105, 115
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	199
BshFI	GGCC	2 cut(s)	45, 176
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	45, 176
Bsp1286I	GDGCHC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	45, 176
BspLI	GGNNCC	1 cut(s)	61
BspQI	GCTCTTC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	63
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	105, 115
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	45, 176
BtgZI	GCGATG	1 cut(s)	233
BtsCI	GGATG	2 cut(s)	105, 115
Cfr13I	GGNCC	1 cut(s)	43
CviJI	RGCY	6 cut(s)	32, 45, 62, 176, 199, 270
CviKI_1	RGCY	6 cut(s)	32, 45, 62, 176, 199, 270
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	62
FaiI	YATR	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	2 cut(s)	112, 122
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	2 cut(s)	6, 271
GluI	GCNGC	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	45, 176
HapII	CCGG	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	2 cut(s)	85, 115
Hpy188III	TCNNGA	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	100, 130
HpyCH4IV	ACGT	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	123
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	59, 242
LpnPI	CCDG	6 cut(s)	26, 49, 59, 76, 112, 185
Lsp1109I	GCAGC	1 cut(s)	257
MaeI	CTAG	2 cut(s)	6, 271
MaeII	ACGT	1 cut(s)	123
MboII	GAAGA	3 cut(s)	12, 217, 245
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	1 cut(s)	92
MnlI	CCTC	2 cut(s)	145, 153
MseI	TTAA	2 cut(s)	35, 212
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	25
PctI	GAATGC	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	35, 212
SatI	GCNGC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	3 cut(s)	126, 131, 272
Sse9I	AATT	1 cut(s)	92
SspMI	CTAG	2 cut(s)	6, 271
StyD4I	CCNGG	1 cut(s)	62
TaiI	ACGT	1 cut(s)	126
TasI	AATT	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	35, 212
Tru9I	TTAA	2 cut(s)	35, 212
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	12
TspGWI	ACGGA	1 cut(s)	255
Van91I	CCANNNNNTGG	1 cut(s)	69
XbaI	TCTAGA	1 cut(s)	5
XspI	CTAG	2 cut(s)	6, 271
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.