Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002222

Physical Location & Seq

Genomic Coordinates Reverse (-)

31684132 .. 31685190

Gene Structure 1059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008526

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACTACTCCTCTGACCGTCATGTCATCATTCTCCTTCTTCTTCATCATCGTCTCCATCAACATCTCCGTCTCCATCTCTCTCTCTTCCATTTTCAAACCCCACCAAAATCCCCCAACCCTAGAGCCCAACACGACCCTAGATCCTCGTCCCCAAAACTATGTCGTCCCATTCGTTGAGTACAAGAAGTGGGAGGATCACTGGGAGTATCTGAAATCGAGTGTGTTGACGGAGGGAGGGGACTGGATCGACAGGAACAATCTGGCCAAGGATTACCCGACAGATTTCAAACTGGTCCGGATTGACCGCGCCTGTGAGATGTCTGGAGCCTTGGCCGCCTTTACGTGGTTCCAAAACCTCGTGAAGATTATGCTCGTCCGGCGGCTGCACCCCATCGTCGGAGGTGACCTCGGCCATGCTGATGGTGTGCGGTTCGTGCTGCTGGACGAGTGTTTGCTCTCTATTGCAAGCTTTCTAGAAGTGTTGGGCTTGGAGATTGCAGCAAAGAAGTCGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005794 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006984 GO:0006986 GO:0006996 GO:0007033 GO:0007040 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008237 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0017171 GO:0019216 GO:0019218 GO:0019222 GO:0019538 GO:0023052 GO:0030968 GO:0031090 GO:0031293 GO:0031974 GO:0031984 GO:0033554 GO:0033619 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036500 GO:0042175 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045540 GO:0046890 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051716 GO:0062012 GO:0065007 GO:0070011 GO:0070013 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0080090 GO:0080171 GO:0090181 GO:0098588 GO:0098791 GO:0098827 GO:0106118 GO:0140096 GO:1901564 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Peptidase_S8

Protein Analysis

173

Amino Acids

19.42

Weight (kDa)

5.78

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBTP1_N	PF23001	52 - 106	1e-09	Membrane-bound Site-1 Protease Family N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19660 AT5G19660 AT5G19660
fragaria_vesca	FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670
malus_domestica	MD02G1045500.v1.1 MD15G1183900.v1.1
prunus_persica	Prupe.7G232300_v2.0.a1 Prupe.7G232300_v2.0.a1
pyrus_communis	pycom02g03790 pycom02g03800 pycom02g03810 pycom15g16550
rosa_chinensis	RchiOBHm_Chr2g0090281
rosa_laevigata	RLG00000008526 RLG00000016094 RLG00000021848 RLG00000032088
rosa_multiflora	Rmu_sc0000714.1_g000011 Rmu_sc0004834.1_g000013 Rmu_sc0005276.1_g000005
rosa_roxburghii	Rroxscaffold_2G00085240 Rroxscaffold_2G00151320
rosa_rugosa	Rorug02G0006200
rosa_samantha	Rh1DG037900 Rh2AG052100 Rh2BG050700 Rh2CG052900 Rh2DG052000 Rh5AG367600 Rh5AG473400 Rh5BG377700 Rh5BG493700 Rh5CG401100 Rh5CG517700 Rh5DG391000 Rh5DG505700
rosa_wichuraiana	Rw2G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	22
AccII	CGCG	1 cut(s)	309
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	4 cut(s)	307, 336, 382, 430
AclWI	GGATC	3 cut(s)	137, 204, 254
AcoI	YGGCCR	3 cut(s)	264, 333, 412
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	345, 398
AgsI	TTSAA	2 cut(s)	97, 289
AluBI	AGCT	1 cut(s)	471
AluI	AGCT	1 cut(s)	471
Alw26I	GTCTC	2 cut(s)	58, 76
AlwI	GGATC	3 cut(s)	137, 204, 254
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	3 cut(s)	264, 333, 412
ApeKI	GCWGC	3 cut(s)	385, 439, 500
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	359
BbvI	GCAGC	3 cut(s)	372, 426, 512
BccI	CCATC	4 cut(s)	65, 83, 401, 416
BcgI	CGANNNNNNTGC	1 cut(s)	492
BcoDI	GTCTC	2 cut(s)	58, 76
BfaI	CTAG	3 cut(s)	122, 140, 476
BisI	GCNGC	5 cut(s)	336, 383, 386, 440, 501
BlsI	GCNGC	5 cut(s)	337, 384, 387, 441, 502
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	328, 350
BmrI	ACTGGG	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	211
BplI	GAGNNNNNCTC	2 cut(s)	393, 425
BpmI	CTGGAG	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	345
BsaJI	CCNNGG	3 cut(s)	267, 330, 409
BsaWI	WCCGGW	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 398
Bse1I	ACTGG	3 cut(s)	206, 248, 297
BseAI	TCCGGA	1 cut(s)	297
BseDI	CCNNGG	3 cut(s)	267, 330, 409
BseLI	CCNNNNNNNGG	2 cut(s)	345, 398
BseNI	ACTGG	3 cut(s)	206, 248, 297
BseXI	GCAGC	3 cut(s)	372, 426, 512
BsgI	GTGCAG	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	266, 335, 414
BsiSI	CCGG	2 cut(s)	298, 379
BslFI	GGGAC	3 cut(s)	135, 152, 254
BslI	CCNNNNNNNGG	2 cut(s)	345, 398
BsmAI	GTCTC	2 cut(s)	58, 76
BsmBI	CGTCTC	2 cut(s)	58, 76
BsmFI	GGGAC	3 cut(s)	135, 152, 254
BsnI	GGCC	3 cut(s)	266, 335, 414
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	142, 196, 246
BspACI	CCGC	4 cut(s)	307, 336, 382, 430
BspANI	GGCC	3 cut(s)	266, 335, 414
BspEI	TCCGGA	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	328, 350
BspPI	GGATC	3 cut(s)	137, 204, 254
BsrI	ACTGG	3 cut(s)	206, 248, 297
BssECI	CCNNGG	3 cut(s)	267, 330, 409
BssMI	GATC	3 cut(s)	142, 196, 246
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	2 cut(s)	267, 330
Bst2BI	CACGAG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	469
BstEII	GGTNACC	1 cut(s)	404
BstFNI	CGCG	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	3 cut(s)	145, 199, 249
BstMAI	GTCTC	2 cut(s)	58, 76
BstMBI	GATC	3 cut(s)	142, 196, 246
BstMWI	GCNNNNNNNGC	3 cut(s)	335, 379, 436
BstPI	GGTNACC	1 cut(s)	404
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	3 cut(s)	372, 426, 512
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	3 cut(s)	266, 335, 414
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	469
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	22, 416
CviJI	RGCY	8 cut(s)	127, 266, 329, 335, 385, 414, 471, 489
CviKI_1	RGCY	8 cut(s)	127, 266, 329, 335, 385, 414, 471, 489
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	3 cut(s)	144, 198, 248
DpnII	GATC	3 cut(s)	142, 196, 246
DrdI	GACNNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	3 cut(s)	264, 333, 412
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	267, 330
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	295
Eco91I	GGTNACC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	404
EcoT14I	CCWWGG	2 cut(s)	267, 330
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	2 cut(s)	267, 330
Esp3I	CGTCTC	2 cut(s)	58, 76
FaeI	CATG	2 cut(s)	25, 419
FaiI	YATR	4 cut(s)	23, 162, 371, 417
FaqI	GGGAC	3 cut(s)	135, 152, 254
FatI	CATG	2 cut(s)	21, 415
Fnu4HI	GCNGC	5 cut(s)	336, 383, 386, 440, 501
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	5 cut(s)	336, 383, 386, 440, 501
FspBI	CTAG	3 cut(s)	122, 140, 476
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	5 cut(s)	336, 383, 386, 440, 501
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	3 cut(s)	266, 335, 414
HapII	CCGG	2 cut(s)	298, 379
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	25, 419
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	469
HpaII	CCGG	2 cut(s)	298, 379
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	3 cut(s)	15, 213, 401
Hpy188III	TCNNGA	4 cut(s)	298, 324, 361, 476
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	344
HpyCH4V	TGCA	3 cut(s)	388, 467, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	335, 379, 436
HpySE526I	ACGT	1 cut(s)	344
Hsp92II	CATG	2 cut(s)	25, 419
HspAI	GCGC	1 cut(s)	309
Kpn2I	TCCGGA	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	142, 196, 246
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	3 cut(s)	372, 426, 512
MaeI	CTAG	3 cut(s)	122, 140, 476
MaeII	ACGT	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	3 cut(s)	144, 198, 248
MboI	GATC	3 cut(s)	142, 196, 246
MboII	GAAGA	4 cut(s)	31, 34, 78, 376
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	8 cut(s)	21, 156, 187, 226, 230, 368, 395, 419
Mox20I	TGGCCA	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	266
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	2 cut(s)	298, 379
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	335, 379, 436
NdeII	GATC	3 cut(s)	142, 196, 246
NlaIII	CATG	2 cut(s)	25, 419
NlaIV	GGNNCC	2 cut(s)	328, 350
NmeAIII	GCCGAG	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PkrI	GCNGC	5 cut(s)	337, 384, 387, 441, 502
Ppu21I	YACGTR	1 cut(s)	345
PspEI	GGTNACC	1 cut(s)	404
PspN4I	GGNNCC	2 cut(s)	328, 350
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	420
SatI	GCNGC	5 cut(s)	336, 383, 386, 440, 501
Sau3AI	GATC	3 cut(s)	142, 196, 246
Sau96I	GGNCC	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	5 cut(s)	347, 360, 406, 411, 473
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	420
SsiI	CCGC	4 cut(s)	307, 336, 382, 430
SspMI	CTAG	3 cut(s)	122, 140, 476
StyI	CCWWGG	2 cut(s)	267, 330
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	2 cut(s)	218, 249
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	2 cut(s)	338, 385
TscAI	CASTG	1 cut(s)	206
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	3 cut(s)	385, 439, 500
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	2 cut(s)	58, 245
TspRI	CASTG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	475
XspI	CTAG	3 cut(s)	122, 140, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.