Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002222

Physical Location & Seq

Genomic Coordinates Forward (+)

3726664 .. 3731542

Gene Structure 4879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG052000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3078 bp

ATGACCACTCCTCTGACCGCCACGTCATCACTATCGTTCTTATTCATCATCATCGTCTCCATCGCCGTAGCCGTCTCCATCTCTCTCTTCCATTACAAGGCCCACCAGAACCCCGCAACCCTAGATCCTCCTCCACCGCAAAACTACGTCGTTCGATTCGTCGAGTACAAGAGGTGGGAGGATCACCGGGAGTATCTGAAATCGAGTGTGCCGGCGGAGGGATGGGACTGGATCGAGAGGAACAATCCGGCCATGGACTACCCGACGGATTTCGGGCTGGTGCGGATTGACGATGGAGCCAGGGAATTGGTGATTGGGGAGATTGGGAAATTGGGGATGGTGAAGGATGTGAATGCTGACGTCAGGTATGGGAGGGGTTTGCTTAGTGAGGAGGAGAAGAGGGAGAAAGTTGGGGCCTTTGTGGATGGGGAGAAGCGGCCGGGGAAGATGTTCACGGCGATGTCGTTTAGCGAAGACGACGGAGCAGTGAGTAATGGCTCTGTTAGCTGGAAAAGGGAGCTCTTGGCTGAGAGATCTCAAATAACTTCATTATTTGGAGCGGATTTTCTTTGGACAAAGGGGTATACCGGTACGAAAGTGAAAATGGCCATATTTGATACTGGTATTCGAGCTAATCACCCGCACTTTCGAAATATTAAGGAGCGGACAAACTGGACAAATGAGGACACATTAAACGACAATCTTGGACATGGGACATTTGTTGCTGGTGTTGTTGCTGGTGTAGATGCAGAGTGTCTTGGATTTGCTCCTGATACAGAGATATATGCGTTTCGTGTGTTTACAGATGCACAGGTATCATACACATCATGGTTCCTTGATGCATTCAACTATGCCATTGCGACCAACATGGATGTACTGAACTTGAGCATAGGTGGACCTGATTACTTGGACCTCCCATTTGTGGAGAAGGTCTGGGAAATAACAGCAAACAACATAATAATGGTTTCAGCAATTGGAAACGATGGACCGCTTTATGGGACTCTAAATAATCCAGCAGACCAAAGTGATGTCATTGGTGTTGGTGGCATCGACTACAGTGATCACATTGCTTCTTTTTCCTCACGAGGCATGAGTACTTGGGAGATGCCGCACGGTTACGGTCGTGTTAAGCCAGATGTTGTTGCATATGGACGGGAAATTATGGGATCCAAGATCAGTACAGGCTGTAAAAGCTTATCTGGCACTAGTGTGGCAAGTCCTGTGGTTGCTGGTATGGTTTGTCTGCTTGTGAGTGTTATCCCTGAAAGCAGTCGGAAGGATACTTTAAATCCAGCAAGCATGAAACAAGCATTGGTTGAGGGTGCTGCAAAACTCGTTGGTCCAAATATGTATGAGCAGGGTGCAGGGAGGGTTGATCTGTTAGAATCATATGAAATCCTGAAGAATTACCAACCTCGTGCCAGCATCTTCCCTAGTATTCTTGATTATACAGACTGCCCATACTCTTGGCCCTTCTGTCGTCAGCCACTTTATGCTGGTGCCATGCCTGTTATCTTCAATGCTACCATTCTAAATGGAATGGGTGTAATTGGCTATGTTGAAAGTCCACCAACTTGGCATCCTTCAGATGAAGTAGGGAATCTTCTAAGTATTCACTTTACATATTCTAATGTTATCTGGCCTTGGACTGGTTATTTAGCGCTTCACATGCAAATTAAGGACGAAGGTGCACAATTTTCAGGAGAGATTAGTGGCAATGTTACTCTTAGGGTATACAGTCCGTCTCCTGGAGAAAAGAATCTTCGGATTAGCACTTGTGTGCTTCAGTTAAGATTGAAGATTGTTCCAACTCCACCAAGATCAAAACGGGTTTTGTGGGACCAGTTTCACAGTATTAAATACCCTCCAGGTTACATCCCTAGAGACTCTTTGGATGTTCGCAATGACATTCTTGACTGGCATGGAGATCACCTGCATACAAATTTTCACATTATGTTCAACATGTTACGAGATGCTGGGTATTATGTAGAAACACTTGGTTCGCCTCTTACTTGCTTTGATGCTCTTCGATATGGGACACTTCTTCTGGTAGATCTTGAAGAAGAGTACTTTCAGGAGGAGATTGAGAAGCTGCGAGATGATGTTCTTAATTCTGGACTGGGATTGGTTGTGTTTTCTGAGTGGTATAATGTAGACACGATGGTGAAGATGAGATTCTTTGATGATAACACACGTAGCTGGTGGACTCCAGTCACTGGAGGTGCAAATGTTCCAGCGTTAAACGACCTGCTGGCTCCGTTTGGGATTGCATTTGGAGATAAGATTCTGAATGGTGATTTTTCTATCAATGGTGAGCAAAGTCGGTATGCATCTGGAACGGATATTGTGAGGTTTCCGAAAGGGGGTTATGTACACAAGTTCCCTTTCCTGGATAGCTCTGAAAGTGGGGCCACTCAGAATGTACTTCGGGATCCTGAGGTGACAATGGCAGATTCTCCCATTCTTGGTCTTGTACAGGTGGGTGAAGGTCGTGTTGTAGTGTATGGAGATTCTAACTGTTTGGACAGCAGTCATATGGTAACTAATTGTTATTGGCTCTTGAGAAAAATGTTAGATTTCACCGGTGGAAACATCAGAGATCCTGTGCTTTTTTCAAGCTCGGTCAAACAAAGTTCACCTTTATATATGGAAGATAACCAATTACCGTCTCGTAGAACAGATGTGAATTTTTCTACATATTCCGCTGTAGTGGGGAAGGAATTGATCTGTGGGAGTGACTCTGTATTTGAAATATGGGGGACTAAAGGTTACAGTTTACAGGTCAAGGGAACAAACAGAAGATTACCAGGCTCTTCTGTATCTAATCCAGGTAGAGGTTTGAATTCTACTGTCGAGGCTTCCCATTTGGAGCATTCCGAGTTGACACTGGGAAATAGAAGTGATCCTTCGGGATATAGGGATGAGCTTGATATGCCTGTGTTAGTTGCTAGTCACTGGCTTGTTCCTGCAATAATTGCCGTAACTGGTTTGGTGGTATTTTTGAGCTTCTGGAGAATTAGACAGAAGCGACGACGACGAAGAAAAGGATCTAGCTCTGGTCGATATTCTAATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005794 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006984 GO:0006986 GO:0006996 GO:0007033 GO:0007040 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008237 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0017171 GO:0019216 GO:0019218 GO:0019222 GO:0019538 GO:0023052 GO:0030968 GO:0031090 GO:0031293 GO:0031974 GO:0031984 GO:0033554 GO:0033619 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036500 GO:0042175 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045540 GO:0046890 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051716 GO:0062012 GO:0065007 GO:0070011 GO:0070013 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0080090 GO:0080171 GO:0090181 GO:0098588 GO:0098791 GO:0098827 GO:0106118 GO:0140096 GO:1901564 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Peptidase_S8

Protein Analysis

1025

Amino Acids

113.91

Weight (kDa)

5.47

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBTP1_N	PF23001	47 - 119	4.6e-13	Membrane-bound Site-1 Protease Family N-terminal domain
Peptidase_S8	PF00082	197 - 449	1.2e-41	Subtilase family
MBTPS1_3rd	PF23094	477 - 604	2.2e-53	MBTPS1, third Ig-like domain
MBTPS1_4th	PF23090	605 - 876	2.2e-146	MBTPS1, fourth GATase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19660 AT5G19660 AT5G19660
fragaria_vesca	FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670
malus_domestica	MD02G1045500.v1.1 MD15G1183900.v1.1
prunus_persica	Prupe.7G232300_v2.0.a1 Prupe.7G232300_v2.0.a1
pyrus_communis	pycom02g03790 pycom02g03800 pycom02g03810 pycom15g16550
rosa_chinensis	RchiOBHm_Chr2g0090281
rosa_laevigata	RLG00000008526 RLG00000016094 RLG00000021848 RLG00000032088
rosa_multiflora	Rmu_sc0000714.1_g000011 Rmu_sc0004834.1_g000013 Rmu_sc0005276.1_g000005
rosa_roxburghii	Rroxscaffold_2G00085240 Rroxscaffold_2G00151320
rosa_rugosa	Rorug02G0006200
rosa_samantha	Rh1DG037900 Rh2AG052100 Rh2BG050700 Rh2CG052900 Rh2DG052000 Rh5AG367600 Rh5AG473400 Rh5BG377700 Rh5BG493700 Rh5CG401100 Rh5CG517700 Rh5DG391000 Rh5DG505700
rosa_wichuraiana	Rw2G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1941
AasI	GACNNNNNNGTC	1 cut(s)	22
AatII	GACGTC	1 cut(s)	363
Acc36I	ACCTGC	2 cut(s)	1941, 2256
AccB1I	GGYRCC	1 cut(s)	1499
AccB7I	CCANNNNNTGG	1 cut(s)	2216
AccBSI	CCGCTC	2 cut(s)	560, 664
AccI	GTMKAC	3 cut(s)	584, 1734, 2154
AcoI	YGGCCR	3 cut(s)	249, 437, 606
AcsI	RAATTY	3 cut(s)	1942, 2686, 2842
AcuI	CTGAAG	3 cut(s)	1421, 1569, 1769
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	9 cut(s)	167, 592, 876, 1096, 1180, 2069, 2373, 2424, 2475
AfeI	AGCGCT	1 cut(s)	1662
AflIII	ACRYGT	2 cut(s)	1962, 2192
AgeI	ACCGGT	2 cut(s)	587, 2582
AgsI	TTSAA	9 cut(s)	847, 1519, 1562, 1798, 1960, 2060, 2616, 2750, 2842
AhlI	ACTAGT	1 cut(s)	1205
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	6 cut(s)	299, 1747, 1867, 2388, 2806, 2827
AjuI	GAANNNNNNNTTGG	4 cut(s)	297, 329, 1295, 1327
AleI	CACNNNNGTG	3 cut(s)	1208, 1778, 2162
Alw21I	GWGCWC	2 cut(s)	522, 1693
Alw26I	GTCTC	5 cut(s)	61, 79, 1749, 1878, 2673
Alw44I	GTGCAC	1 cut(s)	1689
AlwNI	CAGNNNCTG	1 cut(s)	2216
Aor51HI	AGCGCT	1 cut(s)	1662
AoxI	GGCC	8 cut(s)	99, 249, 414, 437, 606, 1469, 1640, 2409
ApaLI	GTGCAC	1 cut(s)	1689
ApeKI	GCWGC	2 cut(s)	1325, 2092
ApoI	RAATTY	3 cut(s)	1942, 2686, 2842
ArsI	GACNNNNNNTTYG	4 cut(s)	902, 934, 2729, 2761
AsiGI	ACCGGT	2 cut(s)	587, 2582
Asp700I	GAANNNNTTC	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	1663
AspS9I	GGNCC	9 cut(s)	100, 414, 896, 910, 986, 1340, 1470, 1840, 2409
AsuC2I	CCSGG	2 cut(s)	188, 441
AsuII	TTCGAA	1 cut(s)	649
AvaII	GGWCC	5 cut(s)	896, 910, 986, 1340, 1840
AxyI	CCTNAGG	1 cut(s)	2436
BaeGI	GKGCMC	1 cut(s)	1693
BaeI	ACNNNNGTAYC	2 cut(s)	582, 615
BalI	TGGCCA	1 cut(s)	608
BamHI	GGATCC	2 cut(s)	1166, 2431
BanI	GGYRCC	1 cut(s)	1499
BanII	GRGCYC	1 cut(s)	522
BarI	GAAGNNNNNNTAC	2 cut(s)	1587, 1619
BauI	CACGAG	2 cut(s)	1083, 1416
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	2 cut(s)	522, 1693
BbvI	GCAGC	2 cut(s)	1312, 2079
BccI	CCATC	8 cut(s)	68, 86, 216, 287, 331, 419, 977, 2155
BceAI	ACGGC	4 cut(s)	50, 56, 471, 2963
BciT130I	CCWGG	6 cut(s)	301, 1749, 1869, 2390, 2808, 2829
BciVI	GTATCC	1 cut(s)	1273
BclI	TGATCA	1 cut(s)	1060
BcnI	CCSGG	2 cut(s)	188, 441
BcoDI	GTCTC	5 cut(s)	61, 79, 1749, 1878, 2673
BcuI	ACTAGT	1 cut(s)	1205
BfaI	CTAG	6 cut(s)	122, 1206, 1434, 1881, 2949, 3051
BfmI	CTRYAG	2 cut(s)	1054, 2706
BfoI	RGCGCY	1 cut(s)	1664
BfuAI	ACCTGC	2 cut(s)	1941, 2256
BfuI	GTATCC	1 cut(s)	1273
BglII	AGATCT	2 cut(s)	533, 2053
BisI	GCNGC	4 cut(s)	437, 1109, 1326, 2093
BlsI	GCNGC	4 cut(s)	438, 1110, 1327, 2094
BmcAI	AGTACT	2 cut(s)	1096, 2069
Bme1390I	CCNGG	8 cut(s)	188, 301, 441, 1749, 1869, 2390, 2808, 2829
Bme18I	GGWCC	5 cut(s)	896, 910, 986, 1340, 1840
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	9 cut(s)	100, 414, 896, 910, 986, 1340, 1470, 1840, 2409
BmiI	GGNNCC	9 cut(s)	298, 415, 833, 1168, 1501, 1841, 2256, 2410, 2433
BmrFI	CCNGG	8 cut(s)	188, 301, 441, 1749, 1869, 2390, 2808, 2829
BmrI	ACTGGG	2 cut(s)	2129, 2897
BmuI	ACTGGG	2 cut(s)	2129, 2897
BoxI	GACNNNNGTC	2 cut(s)	2210, 2529
BpiI	GAAGAC	1 cut(s)	480
BpmI	CTGGAG	5 cut(s)	1770, 1851, 2193, 2238, 3031
Bpu14I	TTCGAA	1 cut(s)	649
BpuEI	CTTGAG	2 cut(s)	904, 2581
BpuMI	CCSGG	2 cut(s)	188, 441
BsaAI	YACGTR	1 cut(s)	2195
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	4 cut(s)	252, 300, 440, 1643
BsaWI	WCCGGW	2 cut(s)	587, 2582
Bse118I	RCCGGY	3 cut(s)	211, 587, 2582
Bse21I	CCTNAGG	1 cut(s)	2436
Bse3DI	GCAATG	4 cut(s)	855, 1065, 1723, 1909
BseBI	CCWGG	6 cut(s)	301, 1749, 1869, 2390, 2808, 2829
BseDI	CCNNGG	4 cut(s)	252, 300, 440, 1643
BseGI	GGATG	9 cut(s)	227, 342, 352, 430, 877, 1579, 1875, 1900, 2926
BseMI	GCAATG	4 cut(s)	855, 1065, 1723, 1909
BseMII	CTCAG	4 cut(s)	519, 2130, 2427, 2429
BseRI	GAGGAG	4 cut(s)	120, 404, 407, 2093
BseSI	GKGCMC	1 cut(s)	1693
BseX3I	CGGCCG	1 cut(s)	437
BseXI	GCAGC	2 cut(s)	1312, 2079
BseYI	CCCAGC	1 cut(s)	1976
BsgI	GTGCAG	1 cut(s)	1383
Bsh1285I	CGRYCG	2 cut(s)	440, 1123
BshFI	GGCC	8 cut(s)	101, 251, 416, 439, 608, 1471, 1642, 2411
BshNI	GGYRCC	1 cut(s)	1499
BshTI	ACCGGT	2 cut(s)	587, 2582
BsiEI	CGRYCG	2 cut(s)	440, 1123
BsiHKAI	GWGCWC	2 cut(s)	522, 1693
BsiSI	CCGG	6 cut(s)	187, 212, 248, 440, 588, 2583
BslFI	GGGAC	6 cut(s)	239, 727, 1012, 1853, 2050, 2773
BsmAI	GTCTC	5 cut(s)	61, 79, 1749, 1878, 2673
BsmBI	CGTCTC	4 cut(s)	61, 79, 1749, 2673
BsmFI	GGGAC	6 cut(s)	239, 727, 1012, 1853, 2050, 2773
BsmI	GAATGC	3 cut(s)	358, 842, 2872
BsnI	GGCC	8 cut(s)	101, 251, 416, 439, 608, 1471, 1642, 2411
Bsp119I	TTCGAA	1 cut(s)	649
Bsp1286I	GDGCHC	2 cut(s)	522, 1693
Bsp1407I	TGTACA	2 cut(s)	2371, 2473
Bsp19I	CCATGG	1 cut(s)	252
BspANI	GGCC	8 cut(s)	101, 251, 416, 439, 608, 1471, 1642, 2411
BspCNI	CTCAG	4 cut(s)	520, 2131, 2428, 2428
BspLI	GGNNCC	9 cut(s)	298, 415, 833, 1168, 1501, 1841, 2256, 2410, 2433
BspMI	ACCTGC	2 cut(s)	1941, 2256
BspQI	GCTCTTC	2 cut(s)	2031, 2818
BspT104I	TTCGAA	1 cut(s)	649
BspT107I	GGYRCC	1 cut(s)	1499
BsrBI	CCGCTC	2 cut(s)	560, 664
BsrDI	GCAATG	4 cut(s)	855, 1065, 1723, 1909
BsrFI	RCCGGY	3 cut(s)	211, 587, 2582
BsrGI	TGTACA	2 cut(s)	2371, 2473
BssAI	RCCGGY	3 cut(s)	211, 587, 2582
BssECI	CCNNGG	4 cut(s)	252, 300, 440, 1643
BssNAI	GTATAC	2 cut(s)	585, 1735
BssNI	GRCGYC	1 cut(s)	360
BssSI	CACGAG	2 cut(s)	1083, 1416
BssT1I	CCWWGG	2 cut(s)	252, 1643
Bst1107I	GTATAC	2 cut(s)	585, 1735
Bst2BI	CACGAG	2 cut(s)	1083, 1416
Bst2UI	CCWGG	6 cut(s)	301, 1749, 1869, 2390, 2808, 2829
Bst4CI	ACNGT	9 cut(s)	1058, 1115, 1121, 1739, 1853, 2519, 2667, 2774, 2851
Bst6I	CTCTTC	5 cut(s)	92, 392, 2031, 2058, 2818
BstACI	GRCGYC	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	2975
BstAUI	TGTACA	2 cut(s)	2371, 2473
BstBAI	YACGTR	1 cut(s)	2195
BstBI	TTCGAA	1 cut(s)	649
BstC8I	GCNNGC	4 cut(s)	213, 1297, 1423, 2253
BstDEI	CTNAG	7 cut(s)	383, 528, 1607, 1727, 2139, 2415, 2436
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	9 cut(s)	227, 342, 352, 430, 877, 1579, 1875, 1900, 2926
BstH2I	RGCGCY	1 cut(s)	1664
BstHHI	GCGC	1 cut(s)	1663
BstMAI	GTCTC	5 cut(s)	61, 79, 1749, 1878, 2673
BstMCI	CGRYCG	2 cut(s)	440, 1123
BstMWI	GCNNNNNNNGC	6 cut(s)	504, 1191, 1200, 1669, 2932, 2975
BstNI	CCWGG	6 cut(s)	301, 1749, 1869, 2390, 2808, 2829
BstNSI	RCATGY	2 cut(s)	1672, 1966
BstPAI	GACNNNNGTC	2 cut(s)	2210, 2529
BstSCI	CCNGG	8 cut(s)	186, 299, 439, 1747, 1867, 2388, 2806, 2827
BstSFI	CTRYAG	2 cut(s)	1054, 2706
BstSLI	GKGCMC	1 cut(s)	1693
BstV1I	GCAGC	2 cut(s)	1312, 2079
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	7 cut(s)	124, 533, 1166, 2053, 2431, 2599, 3047
BstXI	CCANNNNNNTGG	3 cut(s)	307, 1467, 1575
BstYI	RGATCY	7 cut(s)	124, 533, 1166, 2053, 2431, 2599, 3047
BstZ17I	GTATAC	2 cut(s)	585, 1735
BstZI	CGGCCG	1 cut(s)	437
Bsu36I	CCTNAGG	1 cut(s)	2436
BsuI	GTATCC	1 cut(s)	1273
BsuRI	GGCC	8 cut(s)	101, 251, 416, 439, 608, 1471, 1642, 2411
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	2 cut(s)	46, 473
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	9 cut(s)	227, 342, 352, 430, 877, 1579, 1875, 1900, 2926
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	5 cut(s)	492, 1063, 2214, 2885, 2953
BveI	ACCTGC	2 cut(s)	1941, 2256
Cac8I	GCNNGC	4 cut(s)	213, 1297, 1423, 2253
CaiI	CAGNNNCTG	1 cut(s)	2216
CfoI	GCGC	1 cut(s)	1663
Cfr10I	RCCGGY	3 cut(s)	211, 587, 2582
Cfr13I	GGNCC	9 cut(s)	100, 414, 896, 910, 986, 1340, 1470, 1840, 2409
Csp6I	GTAC	9 cut(s)	166, 591, 875, 1095, 1179, 2068, 2372, 2423, 2474
CspAI	ACCGGT	2 cut(s)	587, 2582
CspCI	CAANNNNNGTGG	2 cut(s)	1203, 1238
CviQI	GTAC	9 cut(s)	166, 591, 875, 1095, 1179, 2068, 2372, 2423, 2474
DdeI	CTNAG	7 cut(s)	383, 528, 1607, 1727, 2139, 2415, 2436
DraI	TTTAAA	1 cut(s)	1287
DrdI	GACNNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	3 cut(s)	249, 437, 606
EagI	CGGCCG	1 cut(s)	437
Eam1104I	CTCTTC	5 cut(s)	92, 392, 2031, 2058, 2818
EarI	CTCTTC	5 cut(s)	92, 392, 2031, 2058, 2818
EciI	GGCGGA	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	520
EclXI	CGGCCG	1 cut(s)	437
Eco130I	CCWWGG	2 cut(s)	252, 1643
Eco24I	GRGCYC	1 cut(s)	522
Eco47I	GGWCC	5 cut(s)	896, 910, 986, 1340, 1840
Eco47III	AGCGCT	1 cut(s)	1662
Eco52I	CGGCCG	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	520
Eco57I	CTGAAG	3 cut(s)	1421, 1569, 1769
Eco81I	CCTNAGG	1 cut(s)	2436
EcoICRI	GAGCTC	1 cut(s)	520
EcoO109I	RGGNCCY	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	2842
EcoRII	CCWGG	6 cut(s)	299, 1747, 1867, 2388, 2806, 2827
EcoT14I	CCWWGG	2 cut(s)	252, 1643
EcoT22I	ATGCAT	2 cut(s)	844, 2332
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	2 cut(s)	252, 1643
Esp3I	CGTCTC	4 cut(s)	61, 79, 1749, 2673
FalI	AAGNNNNNCTT	4 cut(s)	2623, 2655, 2890, 2922
FaqI	GGGAC	6 cut(s)	239, 727, 1012, 1853, 2050, 2773
FauI	CCCGC	2 cut(s)	121, 648
FauNDI	CATATG	3 cut(s)	1147, 1390, 2535
FbaI	TGATCA	1 cut(s)	1060
FblI	GTMKAC	3 cut(s)	584, 1734, 2154
Fnu4HI	GCNGC	4 cut(s)	437, 1109, 1326, 2093
FokI	GGATG	9 cut(s)	234, 349, 359, 437, 884, 1566, 1862, 1907, 2933
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	4 cut(s)	437, 1109, 1326, 2093
FspBI	CTAG	6 cut(s)	122, 1206, 1434, 1881, 2949, 3051
GlaI	GCGC	1 cut(s)	1662
GluI	GCNGC	4 cut(s)	437, 1109, 1326, 2093
GsaI	CCCAGC	1 cut(s)	1980
GsuI	CTGGAG	5 cut(s)	1770, 1851, 2193, 2238, 3031
HaeII	RGCGCY	1 cut(s)	1664
HaeIII	GGCC	8 cut(s)	101, 251, 416, 439, 608, 1471, 1642, 2411
HapII	CCGG	6 cut(s)	187, 212, 248, 440, 588, 2583
HhaI	GCGC	1 cut(s)	1663
Hin1I	GRCGYC	1 cut(s)	360
Hin6I	GCGC	1 cut(s)	1661
HinP1I	GCGC	1 cut(s)	1661
HincII	GTYRAC	1 cut(s)	2883
HindII	GTYRAC	1 cut(s)	2883
HindIII	AAGCTT	1 cut(s)	1192
HpaII	CCGG	6 cut(s)	187, 212, 248, 440, 588, 2583
Hpy99I	CGWCG	7 cut(s)	152, 164, 268, 482, 3033, 3036, 3039
HpyAV	CCTTC	9 cut(s)	337, 922, 1270, 1483, 1593, 1679, 2480, 2710, 2916
HpyCH4III	ACNGT	9 cut(s)	1058, 1115, 1121, 1739, 1853, 2519, 2667, 2774, 2851
HpyCH4IV	ACGT	4 cut(s)	23, 147, 360, 2194
HpyF10VI	GCNNNNNNNGC	6 cut(s)	504, 1191, 1200, 1669, 2932, 2975
HpyF3I	CTNAG	7 cut(s)	383, 528, 1607, 1727, 2139, 2415, 2436
HpySE526I	ACGT	4 cut(s)	23, 147, 360, 2194
Hsp92I	GRCGYC	1 cut(s)	360
HspAI	GCGC	1 cut(s)	1661
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	1060
LguI	GCTCTTC	2 cut(s)	2031, 2818
LmnI	GCTCC	8 cut(s)	296, 482, 517, 557, 661, 772, 2260, 2869
Lsp1109I	GCAGC	2 cut(s)	1312, 2079
MaeI	CTAG	6 cut(s)	122, 1206, 1434, 1881, 2949, 3051
MaeII	ACGT	4 cut(s)	23, 147, 360, 2194
MbiI	CCGCTC	2 cut(s)	560, 664
MfeI	CAATTG	1 cut(s)	972
MflI	RGATCY	7 cut(s)	124, 533, 1166, 2053, 2431, 2599, 3047
MhlI	GDGCHC	2 cut(s)	522, 1693
MlsI	TGGCCA	1 cut(s)	608
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	4 cut(s)	994, 1880, 2200, 2732
MmeI	TCCRAC	2 cut(s)	1253, 1832
Mox20I	TGGCCA	1 cut(s)	608
Mph1103I	ATGCAT	2 cut(s)	844, 2332
MroNI	GCCGGC	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	9 cut(s)	657, 692, 1128, 1286, 1677, 1790, 1857, 2109, 2240
MslI	CAYNNNNRTG	5 cut(s)	458, 959, 1208, 1778, 2162
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	1 cut(s)	2705
MspI	CCGG	6 cut(s)	187, 212, 248, 440, 588, 2583
MspR9I	CCNGG	8 cut(s)	188, 301, 441, 1749, 1869, 2390, 2808, 2829
MunI	CAATTG	1 cut(s)	972
Mva1269I	GAATGC	3 cut(s)	358, 842, 2872
MvaI	CCWGG	6 cut(s)	301, 1749, 1869, 2390, 2808, 2829
MwoI	GCNNNNNNNGC	6 cut(s)	504, 1191, 1200, 1669, 2932, 2975
NaeI	GCCGGC	1 cut(s)	213
NciI	CCSGG	2 cut(s)	188, 441
NcoI	CCATGG	1 cut(s)	252
NdeI	CATATG	3 cut(s)	1147, 1390, 2535
NgoMIV	GCCGGC	1 cut(s)	211
NlaIV	GGNNCC	9 cut(s)	298, 415, 833, 1168, 1501, 1841, 2256, 2410, 2433
NmuCI	GTSAC	4 cut(s)	2212, 2440, 2735, 2951
NsiI	ATGCAT	2 cut(s)	844, 2332
NspI	RCATGY	2 cut(s)	1672, 1966
NspV	TTCGAA	1 cut(s)	649
OliI	CACNNNNGTG	3 cut(s)	1208, 1778, 2162
PaqCI	CACCTGC	1 cut(s)	1941
PciI	ACATGT	1 cut(s)	1962
PciSI	GCTCTTC	2 cut(s)	2031, 2818
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 156, 461
PctI	GAATGC	3 cut(s)	358, 842, 2872
PdiI	GCCGGC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	8 cut(s)	156, 1385, 1600, 1759, 2175, 2284, 2453, 2510
PflMI	CCANNNNNTGG	1 cut(s)	2216
PfoI	TCCNGGA	2 cut(s)	1747, 2388
PinAI	ACCGGT	2 cut(s)	587, 2582
PkrI	GCNGC	4 cut(s)	438, 1110, 1327, 2094
PleI	GAGTC	4 cut(s)	994, 1880, 2200, 2732
PpsI	GAGTC	4 cut(s)	994, 1880, 2200, 2732
Ppu21I	YACGTR	1 cut(s)	2195
PscI	ACATGT	1 cut(s)	1962
PshAI	GACNNNNGTC	2 cut(s)	2210, 2529
Psp124BI	GAGCTC	1 cut(s)	522
Psp6I	CCWGG	6 cut(s)	299, 1747, 1867, 2388, 2806, 2827
PspFI	CCCAGC	1 cut(s)	1976
PspGI	CCWGG	6 cut(s)	299, 1747, 1867, 2388, 2806, 2827
PspN4I	GGNNCC	9 cut(s)	298, 415, 833, 1168, 1501, 1841, 2256, 2410, 2433
PspPI	GGNCC	9 cut(s)	100, 414, 896, 910, 986, 1340, 1470, 1840, 2409
PstNI	CAGNNNCTG	1 cut(s)	2216
PsuI	RGATCY	7 cut(s)	124, 533, 1166, 2053, 2431, 2599, 3047
RsaI	GTAC	9 cut(s)	167, 592, 876, 1096, 1180, 2069, 2373, 2424, 2475
RsaNI	GTAC	9 cut(s)	166, 591, 875, 1095, 1179, 2068, 2372, 2423, 2474
RseI	CAYNNNNRTG	5 cut(s)	458, 959, 1208, 1778, 2162
SacI	GAGCTC	1 cut(s)	522
SapI	GCTCTTC	2 cut(s)	2031, 2818
SaqAI	TTAA	9 cut(s)	657, 692, 1128, 1286, 1677, 1790, 1857, 2109, 2240
SatI	GCNGC	4 cut(s)	437, 1109, 1326, 2093
Sau96I	GGNCC	9 cut(s)	100, 414, 896, 910, 986, 1340, 1470, 1840, 2409
ScaI	AGTACT	2 cut(s)	1096, 2069
SchI	GAGTC	4 cut(s)	994, 1880, 2200, 2732
ScrFI	CCNGG	8 cut(s)	188, 301, 441, 1749, 1869, 2390, 2808, 2829
SduI	GDGCHC	2 cut(s)	522, 1693
SfcI	CTRYAG	2 cut(s)	1054, 2706
SfuI	TTCGAA	1 cut(s)	649
SgrAI	CRCCGGYG	1 cut(s)	2582
SinI	GGWCC	5 cut(s)	896, 910, 986, 1340, 1840
SmiMI	CAYNNNNRTG	5 cut(s)	458, 959, 1208, 1778, 2162
SmlI	CTYRAG	2 cut(s)	883, 2560
SmoI	CTYRAG	2 cut(s)	883, 2560
SpeI	ACTAGT	1 cut(s)	1205
SspI	AATATT	1 cut(s)	655
SspMI	CTAG	6 cut(s)	122, 1206, 1434, 1881, 2949, 3051
SstI	GAGCTC	1 cut(s)	522
StyD4I	CCNGG	8 cut(s)	186, 299, 439, 1747, 1867, 2388, 2806, 2827
StyI	CCWWGG	2 cut(s)	252, 1643
TaaI	ACNGT	9 cut(s)	1058, 1115, 1121, 1739, 1853, 2519, 2667, 2774, 2851
TaiI	ACGT	4 cut(s)	26, 150, 363, 2197
TaqII	GACCGA	1 cut(s)	2611
TatI	WGTACW	8 cut(s)	165, 874, 1094, 1178, 2067, 2371, 2422, 2473
TauI	GCSGC	2 cut(s)	439, 1111
TfiI	GAWTC	8 cut(s)	156, 1385, 1600, 1759, 2175, 2284, 2453, 2510
Tru1I	TTAA	9 cut(s)	657, 692, 1128, 1286, 1677, 1790, 1857, 2109, 2240
Tru9I	TTAA	9 cut(s)	657, 692, 1128, 1286, 1677, 1790, 1857, 2109, 2240
TscAI	CASTG	5 cut(s)	492, 1063, 2221, 2892, 2960
TseFI	GTSAC	4 cut(s)	2212, 2440, 2735, 2951
TseI	GCWGC	2 cut(s)	1325, 2092
Tsp45I	GTSAC	4 cut(s)	2212, 2440, 2735, 2951
TspDTI	ATGAA	5 cut(s)	34, 537, 1316, 1407, 1605
TspGWI	ACGGA	5 cut(s)	281, 495, 1731, 2247, 2354
TspRI	CASTG	5 cut(s)	492, 1063, 2221, 2892, 2960
Van91I	CCANNNNNTGG	1 cut(s)	2216
VneI	GTGCAC	1 cut(s)	1689
VpaK11BI	GGWCC	5 cut(s)	896, 910, 986, 1340, 1840
XapI	RAATTY	3 cut(s)	1942, 2686, 2842
XceI	RCATGY	2 cut(s)	1672, 1966
XmiI	GTMKAC	3 cut(s)	584, 1734, 2154
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	6 cut(s)	122, 1206, 1434, 1881, 2949, 3051
ZraI	GACGTC	1 cut(s)	361
ZrmI	AGTACT	2 cut(s)	1096, 2069
Zsp2I	ATGCAT	2 cut(s)	844, 2332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.