Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005276.1

Orthogroup ID

OG0002222

Physical Location & Seq

Genomic Coordinates Reverse (-)

18963 .. 20211

Gene Structure 1249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005276.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgatcgaacagtaccgtccagccacctccgaccggggcaccggtgccaaacatttcattccgtcctccccgaagtccctatggtacgggtttggccgattgttgatcttggaaaaagaatctaagcccgaaagcttcaagttttcctgtgaagcttctgcagttttcggcgatcatcggggttgcatgagggctttaagactaggccggattgacgatggagccagggaattggtgattgtggagattgggaaattggggatggtgaaggatgtgaatgctaacgtcaggtatggtaagggtttgctttgtgaggacaagagggataaagttgtggcctttgtggatggggagaaagggttgggcaagattttaatggcgatgttgtttagtgaagatgacggagtagcgacgagtaatggttctgttagctggaaaagggagctcttggctgacgtgaagttgggaattggacttaagggaggcgacaattaccccaaccactctggccatcaaattcaacccctcgacggaggtgacgccatcggaggtggagaaaggagaggcaaagtcgtcaacgacgtcgttttagggagaggacgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005794 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006984 GO:0006986 GO:0006996 GO:0007033 GO:0007040 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008237 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0017171 GO:0019216 GO:0019218 GO:0019222 GO:0019538 GO:0023052 GO:0030968 GO:0031090 GO:0031293 GO:0031974 GO:0031984 GO:0033554 GO:0033619 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036500 GO:0042175 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045540 GO:0046890 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051716 GO:0062012 GO:0065007 GO:0070011 GO:0070013 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0080090 GO:0080171 GO:0090181 GO:0098588 GO:0098791 GO:0098827 GO:0106118 GO:0140096 GO:1901564 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Peptidase_S8

Protein Analysis

201

Amino Acids

21.78

Weight (kDa)

8.94

Isoelectric Point (pI)

25.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19660 AT5G19660 AT5G19660
fragaria_vesca	FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670 FvH4_1g04670
malus_domestica	MD02G1045500.v1.1 MD15G1183900.v1.1
prunus_persica	Prupe.7G232300_v2.0.a1 Prupe.7G232300_v2.0.a1
pyrus_communis	pycom02g03790 pycom02g03800 pycom02g03810 pycom15g16550
rosa_chinensis	RchiOBHm_Chr2g0090281
rosa_laevigata	RLG00000008526 RLG00000016094 RLG00000021848 RLG00000032088
rosa_multiflora	Rmu_sc0000714.1_g000011 Rmu_sc0004834.1_g000013 Rmu_sc0005276.1_g000005
rosa_roxburghii	Rroxscaffold_2G00085240 Rroxscaffold_2G00151320
rosa_rugosa	Rorug02G0006200
rosa_samantha	Rh1DG037900 Rh2AG052100 Rh2BG050700 Rh2CG052900 Rh2DG052000 Rh5AG367600 Rh5AG473400 Rh5BG377700 Rh5BG493700 Rh5CG401100 Rh5CG517700 Rh5DG391000 Rh5DG505700
rosa_wichuraiana	Rw2G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	585
AccB1I	GGYRCC	2 cut(s)	38, 44
AcoI	YGGCCR	2 cut(s)	94, 508
AcsI	RAATTY	1 cut(s)	516
AcyI	GRCGYC	2 cut(s)	540, 582
AfaI	GTAC	2 cut(s)	14, 86
AfiI	CCNNNNNNNGG	2 cut(s)	33, 530
AflII	CTTAAG	1 cut(s)	476
AgeI	ACCGGT	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	139, 521
AjiI	CACGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	4 cut(s)	135, 155, 432, 445
AluI	AGCT	4 cut(s)	135, 155, 432, 445
Alw21I	GWGCWC	1 cut(s)	447
AoxI	GGCC	4 cut(s)	94, 205, 336, 508
ApoI	RAATTY	1 cut(s)	516
AsiGI	ACCGGT	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	3 cut(s)	247, 277, 548
BaeGI	GKGCMC	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	510
BanI	GGYRCC	2 cut(s)	38, 44
BanII	GRGCYC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	447
BccI	CCATC	5 cut(s)	212, 256, 341, 519, 551
BciT130I	CCWGG	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	35
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	159
BfrI	CTTAAG	1 cut(s)	476
Bme1390I	CCNGG	2 cut(s)	35, 226
BmgBI	CACGTC	1 cut(s)	457
BmiI	GGNNCC	3 cut(s)	40, 46, 223
BmrFI	CCNGG	2 cut(s)	35, 226
BpuMI	CCSGG	1 cut(s)	35
BsaHI	GRCGYC	2 cut(s)	540, 582
BsaJI	CCNNGG	2 cut(s)	34, 225
BsaWI	WCCGGW	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 530
Bse118I	RCCGGY	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	34, 225
BseGI	GGATG	3 cut(s)	267, 277, 352
BseLI	CCNNNNNNNGG	2 cut(s)	33, 530
BseSI	GKGCMC	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	4 cut(s)	96, 207, 338, 510
BshNI	GGYRCC	2 cut(s)	38, 44
BshTI	ACCGGT	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	3 cut(s)	34, 42, 208
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	33, 530
BsmFI	GGGAC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	4 cut(s)	96, 207, 338, 510
Bsp1286I	GDGCHC	2 cut(s)	41, 447
Bsp143I	GATC	3 cut(s)	3, 105, 172
BspANI	GGCC	4 cut(s)	96, 207, 338, 510
BspLI	GGNNCC	3 cut(s)	40, 46, 223
BspMAI	CTGCAG	1 cut(s)	163
BspT107I	GGYRCC	2 cut(s)	38, 44
BspTI	CTTAAG	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	34, 225
BssMI	GATC	3 cut(s)	3, 105, 172
BssNI	GRCGYC	2 cut(s)	540, 582
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	12, 17
BstACI	GRCGYC	2 cut(s)	540, 582
BstAFI	CTTAAG	1 cut(s)	476
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	267, 277, 352
BstKTI	GATC	3 cut(s)	6, 108, 175
BstMBI	GATC	3 cut(s)	3, 105, 172
BstMCI	CGRYCG	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	33, 224
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	41
BstXI	CCANNNNNNTGG	1 cut(s)	232
BsuRI	GGCC	4 cut(s)	96, 207, 338, 510
BtgZI	GCGATG	1 cut(s)	395
BtrI	CACGTC	1 cut(s)	457
BtsCI	GGATG	3 cut(s)	267, 277, 352
Cfr10I	RCCGGY	1 cut(s)	41
CseI	GACGC	1 cut(s)	548
Csp6I	GTAC	2 cut(s)	13, 85
CspAI	ACCGGT	1 cut(s)	41
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	2 cut(s)	13, 85
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	3 cut(s)	5, 107, 174
DpnII	GATC	3 cut(s)	3, 105, 172
EaeI	YGGCCR	2 cut(s)	94, 508
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	447
Eco53kI	GAGCTC	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	447
FaeI	CATG	1 cut(s)	190
FaiI	YATR	3 cut(s)	82, 188, 294
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	186
FokI	GGATG	3 cut(s)	274, 284, 359
FriOI	GRGCYC	1 cut(s)	447
FspBI	CTAG	1 cut(s)	203
HaeIII	GGCC	4 cut(s)	96, 207, 338, 510
HapII	CCGG	3 cut(s)	34, 42, 208
HgaI	GACGC	1 cut(s)	548
Hin1I	GRCGYC	2 cut(s)	540, 582
Hin1II	CATG	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	2 cut(s)	133, 153
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	3 cut(s)	34, 42, 208
HphI	GGTGA	3 cut(s)	247, 277, 548
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	2 cut(s)	31, 548
Hpy8I	GTNNAC	1 cut(s)	577
Hpy99I	CGWCG	4 cut(s)	415, 533, 584, 587
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	12, 17
HpyCH4IV	ACGT	3 cut(s)	285, 456, 582
HpyCH4V	TGCA	2 cut(s)	161, 186
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	3 cut(s)	285, 456, 582
Hsp92I	GRCGYC	2 cut(s)	540, 582
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	3, 105, 172
LmnI	GCTCC	2 cut(s)	221, 442
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	3 cut(s)	285, 456, 582
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	3 cut(s)	5, 107, 174
MboI	GATC	3 cut(s)	3, 105, 172
MboII	GAAGA	1 cut(s)	407
MhlI	GDGCHC	2 cut(s)	41, 447
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	5 cut(s)	230, 254, 468, 490, 516
MluNI	TGGCCA	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	54
Mox20I	TGGCCA	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	3 cut(s)	197, 374, 477
Msp20I	TGGCCA	1 cut(s)	510
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	3 cut(s)	34, 42, 208
MspR9I	CCNGG	2 cut(s)	35, 226
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	226
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	3 cut(s)	3, 105, 172
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	3 cut(s)	40, 46, 223
NmuCI	GTSAC	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	119
PinAI	ACCGGT	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	40, 46, 223
PstI	CTGCAG	1 cut(s)	163
RsaI	GTAC	2 cut(s)	14, 86
RsaNI	GTAC	2 cut(s)	13, 85
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	197, 374, 477
Sau3AI	GATC	3 cut(s)	3, 105, 172
ScrFI	CCNGG	2 cut(s)	35, 226
SduI	GDGCHC	2 cut(s)	41, 447
SfcI	CTRYAG	1 cut(s)	159
SgrAI	CRCCGGYG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	5 cut(s)	230, 254, 468, 490, 516
SspMI	CTAG	1 cut(s)	203
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	33, 224
TaaI	ACNGT	2 cut(s)	12, 17
TaiI	ACGT	3 cut(s)	288, 459, 585
TaqI	TCGA	2 cut(s)	6, 528
TasI	AATT	5 cut(s)	230, 254, 468, 490, 516
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	197, 374, 477
Tru9I	TTAA	3 cut(s)	197, 374, 477
TseFI	GTSAC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	3 cut(s)	51, 417, 546
Vha464I	CTTAAG	1 cut(s)	476
XapI	RAATTY	1 cut(s)	516
XspI	CTAG	1 cut(s)	203
ZraI	GACGTC	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.