Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003176

Physical Location & Seq

Genomic Coordinates Forward (+)

6971031 .. 6986039

Gene Structure 15009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4164 bp

ATGTCCGACAAGGAGATCATGAAAATGGCTGAAGTTCAAATCTTTAAAGGTCAATATTATGATTCCAATCGGAAGCCTATTGAAGGCGGCTTATTGGACCCCCGCTTGGGTCCTGCAAATAGGAGTAGTGGTGCATGTGCGACCTGTGGTGGGACAACGAAGGACTGCCCGGGGCACTTTGGATACTTGGTGCTTGCCCTTCCTGTTTTCAATGTTGGGTATTTAAGTACTATTGTGGACATATTGAAGTGCATTTGTAAGTTATGTTCTGGCATACTTTTGGAGGAGGGAATGCGCATCGAATTTTTGAAGAAAATGAGACGTCCCAAAATGGAGCCCATGAAGAAAAGTGAGTTGATGAAAGTGATAGTGAAGAAGTGTAATAGCTTGACAACCAATAATAGACCAGTGAAGTGCTCCAAATGTGGATTTATAAATGGTTCAGTGAAGAAGGCTGTGGGTGTGCTGGGCATTATCCATGATCGTTCAAAATTTGTTGGTGTTATGGATGACTTTAGATCAGCAATATCTCACACGAAAGAGTCCAAAGCATCCTTTAATCCGGCTACTCATAATCTAAACCCTGCTAGAGTTTTTTCACTGTTCAAAAGGATGGTTGATGAGGATTGTGAGTTGCTTTATCTTTCAGATAGACCAGAGAACCTCATAATGACAAACATTGCGGTGCCACCGATACCTATTCGTCCTTCTGTTATTGTGGATGGATCACAGAGCAATGAAAATGACATTACAGAGAGGTTGAAGAGAATTATTCAGTCAAATTCTAGTCTCCGACAGGATTTAATGGAAGCAAGTTCTGCAGCCAAATGTTTGGCTAGTTGGGAGATACTTCAAGTTGAGGTTGCACAGTACATAAACAGTGATGTTCGTGGTGTTCCCTTTTCCATGCAAACTTCCAAGCCATTGGCTGGTTTTGTGCAGCGCCTGAAAGGGAAAGGAGGGCGTTTTCGTGGGAATTTATCTGGGAAGCGTGTAGAATATACTGGCCGAACTGTTATATCACCAGACCCTAATCTGAAAATTACCGAGGTTGGAATCCCTATCAAAATGGCAACAATATTAACTTATCCAGAACGTGTTTCTCATCATAATATTGAGAAGTTGAGGCAGTGTGTCAGTAATGGACCTGATAAGTACCCTGGTGCCAGAGTGCTTAGAAATTCCGATGGGACTGAATGGGTTTTAAAGGTTAACAGAAAGAGCATTGCTGATTCACTAAAATATGGTGACATAGTTGAACGCCACCTAGAAGACGGGGACGTTGTTCTTTTCAACAGACAACCAAGCTTGCATCGGATGTCTCTCATGTGTCATAGGGCTAAGATCATGCCTTGGAGAACATTGAGGTTTAATGAATCTGTTTGCAACCCATACAATGCTGATTTTGATGGCGATGAAATGAATATGCATGTCCCGCAAACAGAAGAGGCCCGGACAGAAGCTCTTACATTGATGGGGGTGCAAAACAATCTATGTACTCCAAAAAATGGAGAGGTTTTGGTTGCTTCCACCCAAGATTTTCTAACGTCCTCTTTCCTTATTACAAGGAAGGACACATTTTATGACCGTGCATCTTTTTCTCTCATGTGTTCATATATGGGGGATGGAGTGGATACTATTGACTTGCCAACGCCTTCTGTAATTAAGCCAATAGAGCTATGGACAGGAAAACAATTATTTAGTGTTCTAGTGCGCCCAAATTCAAATGTTAGAGTCTATTTGAATCTTACAGTTACGGAGAAATCCTACACCAAGACTGGAGATGGAAGAGAAATTGAAGCAATGTGCCCAAACGACGGATTTGTTTATTTTCGTAACAGTGAGCTCATAGCTGGGCAACTTGGGAAGGGTACTTTGGGGAACGGCAATAAGGATGGACTTTACTCTGTTCTATTGAGAGACTATAAAGCTCATGCTGCTGCTTCTTGCATGAATCGCCTGGCAAAGTTAAGTGCCCGATGGATTGGTAATCATGGATTCTCAATTGGGATTAGTGATGTACAACCAAGTGACAGCTTGTATGATGAGAAGGAAAAATTAATTAAAGAAGGTTATGACAAATGTGGTGGCCAGATAAAGTTGTATAATGAAGGACAGCTACCACTTGTACCTGGTTTTGATGCCGCACAATCACTTGAGACTGGGATAACTAGTTTACTAAACAATATTAGAGATCAAACTGGAAAGTTGTGCATGCAAAAGCTCCATTGGAGAAATAGTCCCTTGATCATGTCCCAGTGTGGTTCTAAAGGATCTCCTATCAATATCAGCCAGATGGTTGCCTGTGTTGGCCAGCAATCAGTTGGGGGTCGTCGTGCACCTAATGGATTCATAGATCGAAGCCTTCCTCACTTCCCTAGATTTGCAAAGATGCCTGCTGCAAAAGGCTTTGTTGCTAGTTCCTTTTACAGTGGCTTGACAGCTACTGAGTTCTTTTTCCATACAATGGGCGGGCGAGAGGGGCTTGTGGATACAGCCGTGAAAACAGCTGATACTGGATACATGTCTCGTAGATTGTCAAAAATTTTGGAGGACTTATCTGTCCAGTACGATAACACGGTAAGGAATTCAAGTGGATCTATAGTTCAATTTTGTTATGGGGATGACGGTATGGATCCTGCAATGATGGAAGGAAAAGAAAGTGGAGCTCCTTTGGACTTCAACCGATTGTTTTTGAAAGCCAAGGCCACATGTCCTGCTGGAGGAAGTGATACCTTGTCTCCTGAAGAAGTGTCTGAAATAGTGAGTAGCAGGCTTTCAAAACACGATATGACTCCTGATGGCGGTTGCGCTGCTGGTTTCAAAACTTCTTTGGAGAAATTCCTGGATAAATTTGTTAAAACATTTAGAGAAACACACGAGACTTTTGTGTTGGATCAAAATCCTGCATTGAAGGAAAAGTCTGCTACTCTGGACAAGATTGTCCAAAACATATCTGGTGTTACTTCTCAACAGCTGAAGGTCTTCCTCGATACTTGCATTTCTCGTTATCATTCAAAAAAGGTCGAAGCTGGGACAGCAATTGGAGTAATTGGAGCTCAAAGTATTGGCGAACCTGGGACGCAGATGACATTAAAAACTTTTCACTTTGCCGGAGTTGCAAGCATGAACGTTACCCTTGGGGTCCCTCGTATCAAGGAAATAATAAACGGAGCAAAAAAGATCAGTACACCCATCATCACTGCAGTACTTGAGTGGGATACTAATGCGAAATTCGCAAGGCTGGTAGCAGGCCGAATTGAGAAAACAAATCTAGGGCAGGTTGCTAAGAGTATAAAAACTGTAATGACTTCAAGAGCGGCATCTATAGTCATCACACTTGATATGGTCATGATTCAAGATGCACACTTGTCTATAGATGCTAATGTTGTAAAAGAATCAATTTTACGAACACCGAGAATCAAACTGAAGAGCGAGCATATTAGGGTTTTGGATATCAGAAAGTTAGAAATTCTTCCTCAGGAGGCTGATAGGAGTAGGCTCTGTTTTCACCTCGACTATCTAAAGAGTATGCTCCCAAAAGTTATTGTACGGGGTGTAGGCACAGTTCAGCGTGTCGTTATTAATGAAGAAAAGGTGAAAAAAGAGAAAAATGATGTTGAAGTTAAAGGAGACGAAAAGAAGTACAAGTTGTTTGCAGAAGGCACCGGTCTTCTAGCGGTAATGGGCACTGAAGGAATTGATGGTTGTAAAACGACAAGTAATGATGTTATGGAAGTGCAGCGGACACTTGGAATTGAAGCTGCTAGAGTCTGTATCATTGAGGAGATAAAGAAAGTAATGAAATCGCACGGGATGAACATAGACGATCGCCATATGATTTTTCTAGCGGATGTTATGACATACAGGGGTGAAGTTCTTGGAATCACAAGATTTGGCGTTTCAAAAATGGACAAGAGTGTTTTGATGCTTGCTTCATTTGAGCGGACAGACGATATCCTATTCAATGCTAGTGTAAACGGGAGAGTTGACAAGATTGAAGGCGTAAGTGAAAGCATCATCATGGGTATCCCAATGCAGATAGGCACTGGAATGTTCAAAGTTAGGCAAAGTGTTTCTTCTTGTCTGGAGCAACCCACAGTTTTGGGACTACCACGTTCAGATGTGCAGCTGGATTATGGGCCACAACCGATTCTTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002376 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0046483 GO:0048518 GO:0050789 GO:0050896 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

1388

Amino Acids

153.26

Weight (kDa)

8.97

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	1 - 327	3.9e-75	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	329 - 494	1.3e-75	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	497 - 674	1.2e-37	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	702 - 805	4.1e-28	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	812 - 1308	1.6e-89	RNA polymerase Rpb1, domain 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60040 AT5G60040
fragaria_vesca	FvH4_3g34290 FvH4_3g34290 FvH4_3g34290 FvH4_6g15631
malus_domestica	MD03G1106800.v1.1 MD09G1157000.v1.1
prunus_persica	Prupe.6G089600_v2.0.a1 Prupe.6G089600_v2.0.a1
pyrus_communis	pycom03g08620 pycom09g07570
rosa_chinensis	RchiOBHm_Chr3g0469301 RchiOBHm_Chr3g0469321 RchiOBHm_Chr5g0061861
rosa_laevigata	RLG00000024360 RLG00000035511
rosa_multiflora	Rmu_sc0004134.1_g000001 Rmu_sc0011641.1_g000013 Rmu_sc0011641.1_g000015 Rmu_sc0019271.1_g000001 Rmu_sc0022191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018870 Rroxscaffold_6G00411990 Rroxscaffold_6G00412000
rosa_rugosa	Rorug03G0100400 Rorug05G0344900 Rorug05G0345000
rosa_samantha	Rh3AG149800 Rh3BG173400 Rh3CG164500 Rh3DG202000 Rh5AG405500 Rh5BG418300 Rh5CG442800 Rh5DG432400
rosa_wichuraiana	Rw5G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	434
AasI	GACNNNNNNGTC	2 cut(s)	2561, 2942
AatII	GACGTC	1 cut(s)	325
Acc16I	TGCGCA	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	3271
AccB1I	GGYRCC	3 cut(s)	685, 1163, 3665
AccB7I	CCANNNNNTGG	3 cut(s)	929, 1508, 2467
AccBSI	CCGCTC	2 cut(s)	3320, 3946
AclI	AACGTT	1 cut(s)	3132
AclWI	GGATC	6 cut(s)	733, 2281, 2605, 2630, 2643, 2904
AcoI	YGGCCR	3 cut(s)	1006, 2089, 2311
AcuI	CTGAAG	5 cut(s)	51, 2766, 2999, 3449, 3714
AcyI	GRCGYC	1 cut(s)	322
AflIII	ACRYGT	3 cut(s)	1096, 2523, 2711
AgeI	ACCGGT	1 cut(s)	3668
AhlI	ACTAGT	1 cut(s)	2171
AjnI	CCWGG	5 cut(s)	1159, 1959, 2131, 2844, 3076
AjuI	GAANNNNNNNTTGG	2 cut(s)	1859, 1891
AloI	GAACNNNNNNTCC	2 cut(s)	2589, 2621
Alw21I	GWGCWC	5 cut(s)	419, 1848, 2341, 2671, 3061
Alw26I	GTCTC	9 cut(s)	313, 794, 1326, 1914, 2153, 2532, 2745, 2876, 3627
Alw44I	GTGCAC	1 cut(s)	2337
AlwI	GGATC	6 cut(s)	733, 2281, 2605, 2630, 2643, 2904
AlwNI	CAGNNNCTG	2 cut(s)	946, 2447
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	7 cut(s)	1006, 1449, 2089, 2311, 2706, 3253, 4142
ApaLI	GTGCAC	1 cut(s)	2337
ApeKI	GCWGC	9 cut(s)	821, 940, 1937, 1940, 2399, 2813, 3742, 3764, 4129
AseI	ATTAAT	2 cut(s)	2060, 3585
AsiGI	ACCGGT	1 cut(s)	3668
Asp700I	GAANNNNTTC	2 cut(s)	2984, 3474
AspLEI	GCGC	4 cut(s)	297, 945, 1716, 2813
AspS9I	GGNCC	6 cut(s)	97, 110, 1145, 1450, 3145, 4142
AsuC2I	CCSGG	3 cut(s)	170, 171, 1453
AsuHPI	GGTGA	5 cut(s)	1014, 1259, 3503, 3610, 3884
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	4 cut(s)	97, 110, 1145, 3145
AxyI	CCTNAGG	1 cut(s)	3480
BaeGI	GKGCMC	5 cut(s)	177, 1811, 1978, 2341, 3692
BaeI	ACNNNNGTAYC	2 cut(s)	2484, 2517
BalI	TGGCCA	2 cut(s)	2091, 2313
BamHI	GGATCC	1 cut(s)	2635
BanI	GGYRCC	3 cut(s)	685, 1163, 3665
BanII	GRGCYC	4 cut(s)	339, 1848, 2671, 3061
BarI	GAAGNNNNNNTAC	2 cut(s)	2103, 2135
BauI	CACGAG	1 cut(s)	2879
BbsI	GAAGAC	3 cut(s)	1278, 2977, 3665
Bbv12I	GWGCWC	5 cut(s)	419, 1848, 2341, 2671, 3061
BbvI	GCAGC	9 cut(s)	833, 952, 1924, 1927, 2386, 2800, 3751, 3754, 4141
BceAI	ACGGC	2 cut(s)	1900, 2483
BciT130I	CCWGG	5 cut(s)	1161, 1961, 2133, 2846, 3078
BciVI	GTATCC	6 cut(s)	176, 1627, 2485, 2513, 3214, 4040
BclI	TGATCA	1 cut(s)	2247
BcnI	CCSGG	3 cut(s)	170, 171, 1453
BcoDI	GTCTC	9 cut(s)	313, 794, 1326, 1914, 2153, 2532, 2745, 2876, 3627
BcuI	ACTAGT	1 cut(s)	2171
BfmI	CTRYAG	5 cut(s)	819, 2601, 3204, 3327, 3375
BfoI	RGCGCY	1 cut(s)	946
BfuAI	ACCTGC	1 cut(s)	3271
BfuI	GTATCC	6 cut(s)	176, 1627, 2485, 2513, 3214, 4040
BmcAI	AGTACT	2 cut(s)	229, 3210
Bme1390I	CCNGG	8 cut(s)	170, 171, 1161, 1453, 1961, 2133, 2846, 3078
Bme18I	GGWCC	4 cut(s)	97, 110, 1145, 3145
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	6 cut(s)	97, 110, 1145, 1450, 3145, 4142
BmiI	GGNNCC	9 cut(s)	99, 111, 336, 687, 1165, 2637, 3146, 3147, 3667
BmrFI	CCNGG	8 cut(s)	170, 171, 1161, 1453, 1961, 2133, 2846, 3078
BmrI	ACTGGG	2 cut(s)	2172, 2251
BmuI	ACTGGG	2 cut(s)	2172, 2251
BpiI	GAAGAC	3 cut(s)	1278, 2977, 3665
BpmI	CTGGAG	3 cut(s)	1800, 2742, 4109
BpuEI	CTTGAG	2 cut(s)	2177, 3233
BpuMI	CCSGG	3 cut(s)	170, 171, 1453
BsaBI	GATNNNNATC	2 cut(s)	66, 2901
BsaHI	GRCGYC	1 cut(s)	322
BsaJI	CCNNGG	8 cut(s)	169, 170, 1047, 1159, 1352, 2703, 3077, 3139
BsaWI	WCCGGW	1 cut(s)	3668
BsaXI	ACNNNNNCTCC	6 cut(s)	115, 145, 2224, 2254, 2725, 2755
Bse118I	RCCGGY	1 cut(s)	3668
Bse1I	ACTGG	9 cut(s)	407, 1009, 1783, 2167, 2206, 2257, 2521, 2566, 4054
Bse21I	CCTNAGG	1 cut(s)	3480
Bse3DI	GCAATG	5 cut(s)	678, 742, 1224, 1809, 2649
Bse8I	GATNNNNATC	2 cut(s)	66, 2901
BseBI	CCWGG	5 cut(s)	1161, 1961, 2133, 2846, 3078
BseDI	CCNNGG	8 cut(s)	169, 170, 1047, 1159, 1352, 2703, 3077, 3139
BseJI	GATNNNNATC	2 cut(s)	66, 2901
BseMI	GCAATG	5 cut(s)	678, 742, 1224, 1809, 2649
BseMII	CTCAG	2 cut(s)	2439, 3494
BseNI	ACTGG	9 cut(s)	407, 1009, 1783, 2167, 2206, 2257, 2521, 2566, 4054
BseRI	GAGGAG	2 cut(s)	299, 3800
BseSI	GKGCMC	5 cut(s)	177, 1811, 1978, 2341, 3692
BseXI	GCAGC	9 cut(s)	833, 952, 1924, 1927, 2386, 2800, 3751, 3754, 4141
BseYI	CCCAGC	3 cut(s)	466, 1853, 3032
BsgI	GTGCAG	3 cut(s)	959, 3761, 4148
Bsh1285I	CGRYCG	1 cut(s)	3832
BshFI	GGCC	7 cut(s)	1008, 1451, 2091, 2313, 2708, 3255, 4144
BshNI	GGYRCC	3 cut(s)	685, 1163, 3665
BshTI	ACCGGT	1 cut(s)	3668
BsiEI	CGRYCG	1 cut(s)	3832
BsiHKAI	GWGCWC	5 cut(s)	419, 1848, 2341, 2671, 3061
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	5 cut(s)	170, 563, 1453, 3114, 3669
BsmAI	GTCTC	9 cut(s)	313, 794, 1326, 1914, 2153, 2532, 2745, 2876, 3627
BsmBI	CGTCTC	2 cut(s)	313, 3627
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	7 cut(s)	1008, 1451, 2091, 2313, 2708, 3255, 4144
BsoBI	CYCGRG	1 cut(s)	169
Bsp1407I	TGTACA	1 cut(s)	2020
BspANI	GGCC	7 cut(s)	1008, 1451, 2091, 2313, 2708, 3255, 4144
BspCNI	CTCAG	2 cut(s)	2440, 3493
BspHI	TCATGA	2 cut(s)	18, 3351
BspLI	GGNNCC	9 cut(s)	99, 111, 336, 687, 1165, 2637, 3146, 3147, 3667
BspMAI	CTGCAG	2 cut(s)	823, 3208
BspMI	ACCTGC	1 cut(s)	3271
BspPI	GGATC	6 cut(s)	733, 2281, 2605, 2630, 2643, 2904
BspQI	GCTCTTC	1 cut(s)	3425
BspT107I	GGYRCC	3 cut(s)	685, 1163, 3665
BsrBI	CCGCTC	2 cut(s)	3320, 3946
BsrDI	GCAATG	5 cut(s)	678, 742, 1224, 1809, 2649
BsrFI	RCCGGY	1 cut(s)	3668
BsrGI	TGTACA	1 cut(s)	2020
BsrI	ACTGG	9 cut(s)	407, 1009, 1783, 2167, 2206, 2257, 2521, 2566, 4054
BssAI	RCCGGY	1 cut(s)	3668
BssECI	CCNNGG	8 cut(s)	169, 170, 1047, 1159, 1352, 2703, 3077, 3139
BssNI	GRCGYC	1 cut(s)	322
BssSI	CACGAG	1 cut(s)	2879
BssT1I	CCWWGG	3 cut(s)	1352, 2703, 3139
Bst2BI	CACGAG	1 cut(s)	2879
Bst2UI	CCWGG	5 cut(s)	1161, 1961, 2133, 2846, 3078
Bst6I	CTCTTC	4 cut(s)	758, 1440, 1783, 3425
BstACI	GRCGYC	1 cut(s)	322
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstAUI	TGTACA	1 cut(s)	2020
BstDEI	CTNAG	5 cut(s)	1175, 1341, 2448, 3288, 3480
BstENI	CCTNNNNNAGG	2 cut(s)	81, 2721
BstH2I	RGCGCY	1 cut(s)	946
BstHHI	GCGC	4 cut(s)	297, 945, 1716, 2813
BstMAI	GTCTC	9 cut(s)	313, 794, 1326, 1914, 2153, 2532, 2745, 2876, 3627
BstMCI	CGRYCG	1 cut(s)	3832
BstMWI	GCNNNNNNNGC	9 cut(s)	818, 1435, 1675, 1937, 1956, 2482, 3038, 3119, 3236
BstNI	CCWGG	5 cut(s)	1161, 1961, 2133, 2846, 3078
BstNSI	RCATGY	5 cut(s)	138, 1433, 2218, 2527, 2715
BstSCI	CCNGG	8 cut(s)	168, 169, 1159, 1451, 1959, 2131, 2844, 3076
BstSFI	CTRYAG	5 cut(s)	819, 2601, 3204, 3327, 3375
BstSLI	GKGCMC	5 cut(s)	177, 1811, 1978, 2341, 3692
BstV1I	GCAGC	9 cut(s)	833, 952, 1924, 1927, 2386, 2800, 3751, 3754, 4141
BstV2I	GAAGAC	3 cut(s)	1278, 2977, 3665
BstX2I	RGATCY	3 cut(s)	2273, 2597, 2635
BstXI	CCANNNNNNTGG	3 cut(s)	832, 925, 4105
BstYI	RGATCY	3 cut(s)	2273, 2597, 2635
Bsu36I	CCTNAGG	1 cut(s)	3480
BsuI	GTATCC	6 cut(s)	176, 1627, 2485, 2513, 3214, 4040
BsuRI	GGCC	7 cut(s)	1008, 1451, 2091, 2313, 2708, 3255, 4144
BtgZI	GCGATG	1 cut(s)	1428
BtsI	GCAGTG	2 cut(s)	1136, 3201
BveI	ACCTGC	1 cut(s)	3271
CaiI	CAGNNNCTG	2 cut(s)	946, 2447
CciI	TCATGA	2 cut(s)	18, 3351
CfoI	GCGC	4 cut(s)	297, 945, 1716, 2813
Cfr10I	RCCGGY	1 cut(s)	3668
Cfr13I	GGNCC	6 cut(s)	97, 110, 1145, 1450, 3145, 4142
Cfr9I	CCCGGG	1 cut(s)	169
CseI	GACGC	1 cut(s)	3091
CsiI	ACCWGGT	1 cut(s)	2131
CspAI	ACCGGT	1 cut(s)	3668
CspCI	CAANNNNNGTGG	2 cut(s)	2068, 2103
DdeI	CTNAG	5 cut(s)	1175, 1341, 2448, 3288, 3480
DraI	TTTAAA	2 cut(s)	46, 1206
DrdI	GACNNNNNNGTC	2 cut(s)	2561, 2942
DseDI	GACNNNNNNGTC	2 cut(s)	2561, 2942
EaeI	YGGCCR	3 cut(s)	1006, 2089, 2311
Eam1104I	CTCTTC	4 cut(s)	758, 1440, 1783, 3425
EarI	CTCTTC	4 cut(s)	758, 1440, 1783, 3425
Ecl136II	GAGCTC	3 cut(s)	1846, 2669, 3059
Eco130I	CCWWGG	3 cut(s)	1352, 2703, 3139
Eco24I	GRGCYC	4 cut(s)	339, 1848, 2671, 3061
Eco32I	GATATC	2 cut(s)	3457, 3958
Eco47I	GGWCC	4 cut(s)	97, 110, 1145, 3145
Eco53kI	GAGCTC	3 cut(s)	1846, 2669, 3059
Eco57I	CTGAAG	5 cut(s)	51, 2766, 2999, 3449, 3714
Eco81I	CCTNAGG	1 cut(s)	3480
Eco88I	CYCGRG	1 cut(s)	169
EcoICRI	GAGCTC	3 cut(s)	1846, 2669, 3059
EcoNI	CCTNNNNNAGG	2 cut(s)	81, 2721
EcoO109I	RGGNCCY	2 cut(s)	110, 3145
EcoRI	GAATTC	1 cut(s)	2587
EcoRII	CCWGG	5 cut(s)	1159, 1959, 2131, 2844, 3076
EcoRV	GATATC	2 cut(s)	3457, 3958
EcoT14I	CCWWGG	3 cut(s)	1352, 2703, 3139
EcoT22I	ATGCAT	1 cut(s)	1431
EcoT38I	GRGCYC	4 cut(s)	339, 1848, 2671, 3061
ErhI	CCWWGG	3 cut(s)	1352, 2703, 3139
Esp3I	CGTCTC	2 cut(s)	313, 3627
FalI	AAGNNNNNCTT	2 cut(s)	4063, 4095
FauI	CCCGC	3 cut(s)	110, 1443, 2465
FauNDI	CATATG	1 cut(s)	3837
FbaI	TGATCA	1 cut(s)	2247
FriOI	GRGCYC	4 cut(s)	339, 1848, 2671, 3061
FspAI	RTGCGCAY	1 cut(s)	296
FspI	TGCGCA	1 cut(s)	296
GlaI	GCGC	4 cut(s)	296, 944, 1715, 2812
GsaI	CCCAGC	3 cut(s)	470, 1857, 3036
GsuI	CTGGAG	3 cut(s)	1800, 2742, 4109
HaeII	RGCGCY	1 cut(s)	946
HaeIII	GGCC	7 cut(s)	1008, 1451, 2091, 2313, 2708, 3255, 4144
HapII	CCGG	5 cut(s)	170, 563, 1453, 3114, 3669
HgaI	GACGC	1 cut(s)	3091
HhaI	GCGC	4 cut(s)	297, 945, 1716, 2813
Hin1I	GRCGYC	1 cut(s)	322
Hin6I	GCGC	4 cut(s)	295, 943, 1714, 2811
HinP1I	GCGC	4 cut(s)	295, 943, 1714, 2811
HincII	GTYRAC	2 cut(s)	1213, 3991
HindII	GTYRAC	2 cut(s)	1213, 3991
HindIII	AAGCTT	1 cut(s)	1306
HpaI	GTTAAC	1 cut(s)	1213
HpaII	CCGG	5 cut(s)	170, 563, 1453, 3114, 3669
HphI	GGTGA	5 cut(s)	1014, 1259, 3503, 3610, 3884
Hpy166II	GTNNAC	7 cut(s)	238, 1213, 2177, 2339, 3191, 3979, 3991
Hpy8I	GTNNAC	7 cut(s)	238, 1213, 2177, 2339, 3191, 3979, 3991
Hpy99I	CGWCG	2 cut(s)	1820, 2337
HpyCH4IV	ACGT	6 cut(s)	322, 1096, 1281, 1547, 3132, 4117
HpyF10VI	GCNNNNNNNGC	9 cut(s)	818, 1435, 1675, 1937, 1956, 2482, 3038, 3119, 3236
HpyF3I	CTNAG	5 cut(s)	1175, 1341, 2448, 3288, 3480
HpySE526I	ACGT	6 cut(s)	322, 1096, 1281, 1547, 3132, 4117
Hsp92I	GRCGYC	1 cut(s)	322
HspAI	GCGC	4 cut(s)	295, 943, 1714, 2811
KflI	GGGWCCC	1 cut(s)	3145
Ksp22I	TGATCA	1 cut(s)	2247
KspAI	GTTAAC	1 cut(s)	1213
LguI	GCTCTTC	1 cut(s)	3425
LmnI	GCTCC	9 cut(s)	334, 422, 2229, 2666, 2674, 3056, 3173, 3540, 4090
Lsp1109I	GCAGC	9 cut(s)	833, 952, 1924, 1927, 2386, 2800, 3751, 3754, 4141
MabI	ACCWGGT	1 cut(s)	2131
MaeII	ACGT	6 cut(s)	322, 1096, 1281, 1547, 3132, 4117
MaeIII	GTNAC	6 cut(s)	1247, 1753, 1835, 2030, 2962, 3133
MbiI	CCGCTC	2 cut(s)	3320, 3946
MfeI	CAATTG	2 cut(s)	2004, 3042
MflI	RGATCY	3 cut(s)	2273, 2597, 2635
MlsI	TGGCCA	2 cut(s)	2091, 2313
MluNI	TGGCCA	2 cut(s)	2091, 2313
MlyI	GAGTC	4 cut(s)	551, 1743, 2788, 3780
MmeI	TCCRAC	4 cut(s)	30, 817, 1033, 2874
Mox20I	TGGCCA	2 cut(s)	2091, 2313
Mph1103I	ATGCAT	1 cut(s)	1431
MroXI	GAANNNNTTC	2 cut(s)	2984, 3474
MscI	TGGCCA	2 cut(s)	2091, 2313
MslI	CAYNNNNRTG	4 cut(s)	23, 683, 4022, 4052
Msp20I	TGGCCA	2 cut(s)	2091, 2313
MspA1I	CMGCKG	4 cut(s)	2510, 2977, 3745, 4132
MspI	CCGG	5 cut(s)	170, 563, 1453, 3114, 3669
MspR9I	CCNGG	8 cut(s)	170, 171, 1161, 1453, 1961, 2133, 2846, 3078
MunI	CAATTG	2 cut(s)	2004, 3042
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	5 cut(s)	1161, 1961, 2133, 2846, 3078
MwoI	GCNNNNNNNGC	9 cut(s)	818, 1435, 1675, 1937, 1956, 2482, 3038, 3119, 3236
NciI	CCSGG	3 cut(s)	170, 171, 1453
NdeI	CATATG	1 cut(s)	3837
NlaIV	GGNNCC	9 cut(s)	99, 111, 336, 687, 1165, 2637, 3146, 3147, 3667
NmuCI	GTSAC	2 cut(s)	1247, 2030
NsbI	TGCGCA	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	1431
NspI	RCATGY	5 cut(s)	138, 1433, 2218, 2527, 2715
PacI	TTAATTAA	1 cut(s)	2064
PaeI	GCATGC	1 cut(s)	2218
PagI	TCATGA	2 cut(s)	18, 3351
PciI	ACATGT	2 cut(s)	2523, 2711
PciSI	GCTCTTC	1 cut(s)	3425
PctI	GAATGC	1 cut(s)	297
PdmI	GAANNNNTTC	2 cut(s)	2984, 3474
PflMI	CCANNNNNTGG	3 cut(s)	929, 1508, 2467
PfoI	TCCNGGA	1 cut(s)	2844
PinAI	ACCGGT	1 cut(s)	3668
Ple19I	CGATCG	1 cut(s)	3832
PleI	GAGTC	4 cut(s)	550, 1742, 2788, 3779
PpsI	GAGTC	4 cut(s)	550, 1742, 2788, 3779
PpuMI	RGGWCCY	2 cut(s)	110, 3145
PscI	ACATGT	2 cut(s)	2523, 2711
PshBI	ATTAAT	2 cut(s)	2060, 3585
PsiI	TTATAA	1 cut(s)	434
Psp124BI	GAGCTC	3 cut(s)	1848, 2671, 3061
Psp1406I	AACGTT	1 cut(s)	3132
Psp5II	RGGWCCY	2 cut(s)	110, 3145
Psp6I	CCWGG	5 cut(s)	1159, 1959, 2131, 2844, 3076
PspFI	CCCAGC	3 cut(s)	466, 1853, 3032
PspGI	CCWGG	5 cut(s)	1159, 1959, 2131, 2844, 3076
PspN4I	GGNNCC	9 cut(s)	99, 111, 336, 687, 1165, 2637, 3146, 3147, 3667
PspPI	GGNCC	6 cut(s)	97, 110, 1145, 1450, 3145, 4142
PspPPI	RGGWCCY	2 cut(s)	110, 3145
PsrI	GAACNNNNNNTAC	4 cut(s)	250, 282, 3552, 3584
PstI	CTGCAG	2 cut(s)	823, 3208
PstNI	CAGNNNCTG	2 cut(s)	946, 2447
PsuI	RGATCY	3 cut(s)	2273, 2597, 2635
PvuI	CGATCG	1 cut(s)	3832
PvuII	CAGCTG	3 cut(s)	2510, 2977, 4132
RseI	CAYNNNNRTG	4 cut(s)	23, 683, 4022, 4052
SacI	GAGCTC	3 cut(s)	1848, 2671, 3061
SapI	GCTCTTC	1 cut(s)	3425
Sau96I	GGNCC	6 cut(s)	97, 110, 1145, 1450, 3145, 4142
ScaI	AGTACT	2 cut(s)	229, 3210
SchI	GAGTC	4 cut(s)	551, 1743, 2788, 3780
ScrFI	CCNGG	8 cut(s)	170, 171, 1161, 1453, 1961, 2133, 2846, 3078
SexAI	ACCWGGT	1 cut(s)	2131
SfcI	CTRYAG	5 cut(s)	819, 2601, 3204, 3327, 3375
SinI	GGWCC	4 cut(s)	97, 110, 1145, 3145
SmaI	CCCGGG	1 cut(s)	171
SmiMI	CAYNNNNRTG	4 cut(s)	23, 683, 4022, 4052
SmlI	CTYRAG	2 cut(s)	2156, 3212
SmoI	CTYRAG	2 cut(s)	2156, 3212
SpeI	ACTAGT	1 cut(s)	2171
SphI	GCATGC	1 cut(s)	2218
SspI	AATATT	4 cut(s)	56, 1080, 1114, 2188
SstI	GAGCTC	3 cut(s)	1848, 2671, 3061
StyD4I	CCNGG	8 cut(s)	168, 169, 1159, 1451, 1959, 2131, 2844, 3076
StyI	CCWWGG	3 cut(s)	1352, 2703, 3139
TaiI	ACGT	6 cut(s)	325, 1099, 1284, 1550, 3135, 4120
TaqI	TCGA	5 cut(s)	300, 2359, 2991, 3027, 3516
TatI	WGTACW	7 cut(s)	227, 870, 1496, 2020, 3188, 3208, 3645
TauI	GCSGC	3 cut(s)	90, 2147, 3323
TseFI	GTSAC	2 cut(s)	1247, 2030
TseI	GCWGC	9 cut(s)	821, 940, 1937, 1940, 2399, 2813, 3742, 3764, 4129
Tsp45I	GTSAC	2 cut(s)	1247, 2030
TspGWI	ACGGA	3 cut(s)	1772, 1833, 3186
TspMI	CCCGGG	1 cut(s)	169
Van91I	CCANNNNNTGG	3 cut(s)	929, 1508, 2467
VneI	GTGCAC	1 cut(s)	2337
VpaK11BI	GGWCC	4 cut(s)	97, 110, 1145, 3145
VspI	ATTAAT	2 cut(s)	2060, 3585
XagI	CCTNNNNNAGG	2 cut(s)	81, 2721
XceI	RCATGY	5 cut(s)	138, 1433, 2218, 2527, 2715
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1677, 2321, 2954
XmaI	CCCGGG	1 cut(s)	169
XmnI	GAANNNNTTC	2 cut(s)	2984, 3474
ZraI	GACGTC	1 cut(s)	323
ZrmI	AGTACT	2 cut(s)	229, 3210
Zsp2I	ATGCAT	1 cut(s)	1431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.