DNA polymerase epsilon catalytic subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08260 AT1G08260 AT2G27120 AT2G27120 |
| fragaria_vesca | FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 |
| malus_domestica | MD03G1139200.v1.1 MD11G1160700.v1.1 |
| prunus_persica | Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 |
| pyrus_communis | pycom03g09420 pycom03g09430 pycom11g13140 pycom11g13150 |
| rosa_chinensis | RchiOBHm_Chr5g0054631 RchiOBHm_Chr5g0054881 |
| rosa_laevigata | RLG00000034941 |
| rosa_multiflora | Rmu_co8010264.1_g000001 Rmu_sc0023829.1_g000001 Rmu_sc0027854.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00025840 Rroxscaffold_1G00026110 Rroxscaffold_1G00026140 Rroxscaffold_1G00026150 Rroxscaffold_1G00026330 |
| rosa_rugosa | Rorug05G0287100 Rorug05G0287100 |
| rosa_samantha | Rh5AG357600 Rh5AG358300 Rh5BG369700 Rh5CG392300 Rh5DG383300 |
| rosa_wichuraiana | Rw5G033580 Rw5G033790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2667 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 44, 2129 |
| Acc16I | TGCGCA | 2 cut(s) | 1403, 2381 |
| AccI | GTMKAC | 1 cut(s) | 2350 |
| AccII | CGCG | 1 cut(s) | 1049 |
| AccIII | TCCGGA | 2 cut(s) | 1387, 2536 |
| AciI | CCGC | 5 cut(s) | 70, 75, 616, 973, 1047 |
| AclI | AACGTT | 1 cut(s) | 2610 |
| AclWI | GGATC | 5 cut(s) | 183, 1484, 2162, 2536, 2654 |
| AcoI | YGGCCR | 1 cut(s) | 1543 |
| AcsI | RAATTY | 8 cut(s) | 500, 770, 899, 990, 1121, 2170, 2278, 2705 |
| AcuI | CTGAAG | 2 cut(s) | 741, 1823 |
| AfaI | GTAC | 4 cut(s) | 639, 656, 884, 2222 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 25, 102, 168, 973 |
| AflII | CTTAAG | 2 cut(s) | 689, 1193 |
| AflIII | ACRYGT | 2 cut(s) | 475, 1904 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 89, 121 |
| AleI | CACNNNNGTG | 1 cut(s) | 2344 |
| Alw26I | GTCTC | 4 cut(s) | 316, 743, 1389, 1523 |
| AlwI | GGATC | 5 cut(s) | 183, 1484, 2162, 2536, 2654 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 782 |
| Aor13HI | TCCGGA | 2 cut(s) | 1387, 2536 |
| AoxI | GGCC | 4 cut(s) | 400, 1025, 1189, 1543 |
| ApeKI | GCWGC | 3 cut(s) | 278, 509, 1802 |
| ApoI | RAATTY | 8 cut(s) | 500, 770, 899, 990, 1121, 2170, 2278, 2705 |
| AseI | ATTAAT | 1 cut(s) | 533 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1431, 2763 |
| AspLEI | GCGC | 4 cut(s) | 1404, 2082, 2382, 2521 |
| AspS9I | GGNCC | 7 cut(s) | 28, 46, 72, 1189, 1441, 2720, 2805 |
| AsuHPI | GGTGA | 5 cut(s) | 931, 991, 1022, 1249, 1505 |
| AvaII | GGWCC | 6 cut(s) | 28, 46, 72, 1441, 2720, 2805 |
| AxyI | CCTNAGG | 2 cut(s) | 1176, 1245 |
| BaeGI | GKGCMC | 1 cut(s) | 1778 |
| BalI | TGGCCA | 1 cut(s) | 1545 |
| BbsI | GAAGAC | 1 cut(s) | 1901 |
| BbvI | GCAGC | 3 cut(s) | 290, 496, 1789 |
| BceAI | ACGGC | 2 cut(s) | 341, 2008 |
| BciVI | GTATCC | 3 cut(s) | 679, 1708, 1821 |
| BclI | TGATCA | 1 cut(s) | 1629 |
| BcoDI | GTCTC | 4 cut(s) | 316, 743, 1389, 1523 |
| BfaI | CTAG | 3 cut(s) | 101, 1593, 2271 |
| BfoI | RGCGCY | 1 cut(s) | 2083 |
| BfrI | CTTAAG | 2 cut(s) | 689, 1193 |
| BfuI | GTATCC | 3 cut(s) | 679, 1708, 1821 |
| BglII | AGATCT | 4 cut(s) | 373, 703, 1577, 1648 |
| BisI | GCNGC | 4 cut(s) | 279, 510, 1047, 1803 |
| BlsI | GCNGC | 4 cut(s) | 280, 511, 1048, 1804 |
| Bme18I | GGWCC | 6 cut(s) | 28, 46, 72, 1441, 2720, 2805 |
| BmgT120I | GGNCC | 7 cut(s) | 28, 46, 72, 1189, 1441, 2720, 2805 |
| BmiI | GGNNCC | 7 cut(s) | 29, 47, 48, 1184, 2437, 2806, 2807 |
| BmsI | GCATC | 5 cut(s) | 496, 769, 1297, 1298, 1354 |
| BpiI | GAAGAC | 1 cut(s) | 1901 |
| BpmI | CTGGAG | 4 cut(s) | 110, 695, 1253, 2436 |
| BpuEI | CTTGAG | 3 cut(s) | 543, 2060, 2510 |
| Bsa29I | ATCGAT | 1 cut(s) | 2833 |
| BsaAI | YACGTR | 1 cut(s) | 1766 |
| BsaBI | GATNNNNATC | 4 cut(s) | 378, 1167, 1647, 1887 |
| BsaJI | CCNNGG | 6 cut(s) | 31, 50, 78, 1186, 1230, 2265 |
| BsaWI | WCCGGW | 3 cut(s) | 1387, 2432, 2536 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 77, 107 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 25, 102, 168, 973 |
| Bse1I | ACTGG | 3 cut(s) | 672, 1028, 2129 |
| Bse21I | CCTNAGG | 2 cut(s) | 1176, 1245 |
| Bse3DI | GCAATG | 2 cut(s) | 1812, 2739 |
| Bse8I | GATNNNNATC | 4 cut(s) | 378, 1167, 1647, 1887 |
| BseAI | TCCGGA | 2 cut(s) | 1387, 2536 |
| BseCI | ATCGAT | 1 cut(s) | 2833 |
| BseDI | CCNNGG | 6 cut(s) | 31, 50, 78, 1186, 1230, 2265 |
| BseGI | GGATG | 7 cut(s) | 235, 868, 1225, 1289, 1345, 1801, 2722 |
| BseJI | GATNNNNATC | 4 cut(s) | 378, 1167, 1647, 1887 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 25, 102, 168, 973 |
| BseMI | GCAATG | 2 cut(s) | 1812, 2739 |
| BseMII | CTCAG | 5 cut(s) | 239, 1190, 1236, 1292, 1986 |
| BseNI | ACTGG | 3 cut(s) | 672, 1028, 2129 |
| BseRI | GAGGAG | 2 cut(s) | 95, 98 |
| BseSI | GKGCMC | 1 cut(s) | 1778 |
| BseXI | GCAGC | 3 cut(s) | 290, 496, 1789 |
| BsgI | GTGCAG | 1 cut(s) | 383 |
| Bsh1236I | CGCG | 1 cut(s) | 1049 |
| BshFI | GGCC | 4 cut(s) | 402, 1027, 1191, 1545 |
| BshVI | ATCGAT | 1 cut(s) | 2833 |
| BsiSI | CCGG | 3 cut(s) | 1388, 2433, 2537 |
| BslFI | GGGAC | 3 cut(s) | 32, 41, 2818 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 25, 102, 168, 973 |
| BsmAI | GTCTC | 4 cut(s) | 316, 743, 1389, 1523 |
| BsmBI | CGTCTC | 2 cut(s) | 316, 743 |
| BsmFI | GGGAC | 3 cut(s) | 32, 41, 2818 |
| BsmI | GAATGC | 1 cut(s) | 2763 |
| BsnI | GGCC | 4 cut(s) | 402, 1027, 1191, 1545 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1778 |
| Bsp13I | TCCGGA | 2 cut(s) | 1387, 2536 |
| BspACI | CCGC | 5 cut(s) | 70, 75, 616, 973, 1047 |
| BspANI | GGCC | 4 cut(s) | 402, 1027, 1191, 1545 |
| BspCNI | CTCAG | 5 cut(s) | 238, 1189, 1237, 1291, 1987 |
| BspDI | ATCGAT | 1 cut(s) | 2833 |
| BspEI | TCCGGA | 2 cut(s) | 1387, 2536 |
| BspFNI | CGCG | 1 cut(s) | 1049 |
| BspLI | GGNNCC | 7 cut(s) | 29, 47, 48, 1184, 2437, 2806, 2807 |
| BspPI | GGATC | 5 cut(s) | 183, 1484, 2162, 2536, 2654 |
| BspTI | CTTAAG | 2 cut(s) | 689, 1193 |
| BsrDI | GCAATG | 2 cut(s) | 1812, 2739 |
| BsrI | ACTGG | 3 cut(s) | 672, 1028, 2129 |
| BssECI | CCNNGG | 6 cut(s) | 31, 50, 78, 1186, 1230, 2265 |
| BssNAI | GTATAC | 1 cut(s) | 2351 |
| BssT1I | CCWWGG | 1 cut(s) | 2265 |
| Bst1107I | GTATAC | 1 cut(s) | 2351 |
| Bst4CI | ACNGT | 4 cut(s) | 32, 1142, 2096, 2191 |
| Bst6I | CTCTTC | 1 cut(s) | 1764 |
| BstAFI | CTTAAG | 2 cut(s) | 689, 1193 |
| BstBAI | YACGTR | 1 cut(s) | 1766 |
| BstC8I | GCNNGC | 5 cut(s) | 717, 1129, 1916, 2458, 2462 |
| BstDEI | CTNAG | 6 cut(s) | 225, 950, 1176, 1245, 1278, 1995 |
| BstDSI | CCRYGG | 1 cut(s) | 31 |
| BstF5I | GGATG | 7 cut(s) | 235, 868, 1225, 1289, 1345, 1801, 2722 |
| BstFNI | CGCG | 1 cut(s) | 1049 |
| BstH2I | RGCGCY | 1 cut(s) | 2083 |
| BstHHI | GCGC | 4 cut(s) | 1404, 2082, 2382, 2521 |
| BstMAI | GTCTC | 4 cut(s) | 316, 743, 1389, 1523 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 15, 515, 1124, 1454, 2077 |
| BstNSI | RCATGY | 2 cut(s) | 479, 1908 |
| BstSLI | GKGCMC | 1 cut(s) | 1778 |
| BstUI | CGCG | 1 cut(s) | 1049 |
| BstV1I | GCAGC | 3 cut(s) | 290, 496, 1789 |
| BstV2I | GAAGAC | 1 cut(s) | 1901 |
| BstX2I | RGATCY | 7 cut(s) | 373, 703, 1577, 1648, 2154, 2528, 2659 |
| BstYI | RGATCY | 7 cut(s) | 373, 703, 1577, 1648, 2154, 2528, 2659 |
| BstZ17I | GTATAC | 1 cut(s) | 2351 |
| Bsu15I | ATCGAT | 1 cut(s) | 2833 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1176, 1245 |
| BsuI | GTATCC | 3 cut(s) | 679, 1708, 1821 |
| BsuRI | GGCC | 4 cut(s) | 402, 1027, 1191, 1545 |
| BsuTUI | ATCGAT | 1 cut(s) | 2833 |
| BtgI | CCRYGG | 1 cut(s) | 31 |
| BtsCI | GGATG | 7 cut(s) | 235, 868, 1225, 1289, 1345, 1801, 2722 |
| BtsI | GCAGTG | 2 cut(s) | 656, 1872 |
| BtsIMutI | CAGTG | 3 cut(s) | 656, 1872, 2140 |
| Cac8I | GCNNGC | 5 cut(s) | 717, 1129, 1916, 2458, 2462 |
| CaiI | CAGNNNCTG | 1 cut(s) | 782 |
| CfoI | GCGC | 4 cut(s) | 1404, 2082, 2382, 2521 |
| Cfr13I | GGNCC | 7 cut(s) | 28, 46, 72, 1189, 1441, 2720, 2805 |
| ClaI | ATCGAT | 1 cut(s) | 2833 |
| CpoI | CGGWCCG | 1 cut(s) | 72 |
| Csp6I | GTAC | 4 cut(s) | 638, 655, 883, 2221 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1393, 1428, 2254, 2289 |
| CspI | CGGWCCG | 1 cut(s) | 72 |
| CviQI | GTAC | 4 cut(s) | 638, 655, 883, 2221 |
| DdeI | CTNAG | 6 cut(s) | 225, 950, 1176, 1245, 1278, 1995 |
| DraI | TTTAAA | 1 cut(s) | 1063 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 44, 2129 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 44, 2129 |
| EaeI | YGGCCR | 1 cut(s) | 1543 |
| Eam1104I | CTCTTC | 1 cut(s) | 1764 |
| EarI | CTCTTC | 1 cut(s) | 1764 |
| Eco130I | CCWWGG | 1 cut(s) | 2265 |
| Eco47I | GGWCC | 6 cut(s) | 28, 46, 72, 1441, 2720, 2805 |
| Eco57I | CTGAAG | 2 cut(s) | 741, 1823 |
| Eco81I | CCTNAGG | 2 cut(s) | 1176, 1245 |
| EcoO109I | RGGNCCY | 3 cut(s) | 46, 1189, 2805 |
| EcoT14I | CCWWGG | 1 cut(s) | 2265 |
| ErhI | CCWWGG | 1 cut(s) | 2265 |
| Esp3I | CGTCTC | 2 cut(s) | 316, 743 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 360, 392, 452, 484, 2067, 2099 |
| FaqI | GGGAC | 3 cut(s) | 32, 41, 2818 |
| FauI | CCCGC | 1 cut(s) | 966 |
| FauNDI | CATATG | 1 cut(s) | 969 |
| FbaI | TGATCA | 1 cut(s) | 1629 |
| FblI | GTMKAC | 1 cut(s) | 2350 |
| Fnu4HI | GCNGC | 4 cut(s) | 279, 510, 1047, 1803 |
| FokI | GGATG | 7 cut(s) | 242, 875, 1212, 1276, 1332, 1808, 2729 |
| Fsp4HI | GCNGC | 4 cut(s) | 279, 510, 1047, 1803 |
| FspBI | CTAG | 3 cut(s) | 101, 1593, 2271 |
| FspI | TGCGCA | 2 cut(s) | 1403, 2381 |
| GlaI | GCGC | 4 cut(s) | 1403, 2081, 2381, 2520 |
| GluI | GCNGC | 4 cut(s) | 279, 510, 1047, 1803 |
| GsuI | CTGGAG | 4 cut(s) | 110, 695, 1253, 2436 |
| HaeII | RGCGCY | 1 cut(s) | 2083 |
| HaeIII | GGCC | 4 cut(s) | 402, 1027, 1191, 1545 |
| HapII | CCGG | 3 cut(s) | 1388, 2433, 2537 |
| HhaI | GCGC | 4 cut(s) | 1404, 2082, 2382, 2521 |
| Hin6I | GCGC | 4 cut(s) | 1402, 2080, 2380, 2519 |
| HinP1I | GCGC | 4 cut(s) | 1402, 2080, 2380, 2519 |
| HincII | GTYRAC | 1 cut(s) | 820 |
| HindII | GTYRAC | 1 cut(s) | 820 |
| HindIII | AAGCTT | 5 cut(s) | 516, 1601, 1736, 1916, 2252 |
| HpaII | CCGG | 3 cut(s) | 1388, 2433, 2537 |
| HphI | GGTGA | 5 cut(s) | 931, 991, 1022, 1249, 1505 |
| Hpy166II | GTNNAC | 4 cut(s) | 820, 885, 2122, 2351 |
| Hpy8I | GTNNAC | 4 cut(s) | 820, 885, 2122, 2351 |
| Hpy99I | CGWCG | 2 cut(s) | 485, 757 |
| HpyAV | CCTTC | 8 cut(s) | 55, 116, 413, 899, 2095, 2205, 2239, 2753 |
| HpyCH4III | ACNGT | 4 cut(s) | 32, 1142, 2096, 2191 |
| HpyCH4IV | ACGT | 5 cut(s) | 306, 1159, 1686, 1765, 2610 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 15, 515, 1124, 1454, 2077 |
| HpyF3I | CTNAG | 6 cut(s) | 225, 950, 1176, 1245, 1278, 1995 |
| HpySE526I | ACGT | 5 cut(s) | 306, 1159, 1686, 1765, 2610 |
| HspAI | GCGC | 4 cut(s) | 1402, 2080, 2380, 2519 |
| KflI | GGGWCCC | 2 cut(s) | 46, 2805 |
| Kpn2I | TCCGGA | 2 cut(s) | 1387, 2536 |
| Ksp22I | TGATCA | 1 cut(s) | 1629 |
| LmnI | GCTCC | 3 cut(s) | 85, 1182, 2435 |
| Lsp1109I | GCAGC | 3 cut(s) | 290, 496, 1789 |
| LweI | GCATC | 5 cut(s) | 496, 769, 1297, 1298, 1354 |
| MaeI | CTAG | 3 cut(s) | 101, 1593, 2271 |
| MaeII | ACGT | 5 cut(s) | 306, 1159, 1686, 1765, 2610 |
| MaeIII | GTNAC | 9 cut(s) | 464, 830, 919, 997, 1091, 1201, 1855, 1961, 2422 |
| MfeI | CAATTG | 2 cut(s) | 1625, 2700 |
| MflI | RGATCY | 7 cut(s) | 373, 703, 1577, 1648, 2154, 2528, 2659 |
| MhlI | GDGCHC | 1 cut(s) | 1778 |
| MlsI | TGGCCA | 1 cut(s) | 1545 |
| MluNI | TGGCCA | 1 cut(s) | 1545 |
| MlyI | GAGTC | 6 cut(s) | 32, 101, 533, 550, 2000, 2644 |
| MmeI | TCCRAC | 2 cut(s) | 1060, 1613 |
| Mox20I | TGGCCA | 1 cut(s) | 1545 |
| MroI | TCCGGA | 2 cut(s) | 1387, 2536 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1431, 2763 |
| MscI | TGGCCA | 1 cut(s) | 1545 |
| MslI | CAYNNNNRTG | 3 cut(s) | 732, 1794, 2344 |
| Msp20I | TGGCCA | 1 cut(s) | 1545 |
| MspCI | CTTAAG | 2 cut(s) | 689, 1193 |
| MspI | CCGG | 3 cut(s) | 1388, 2433, 2537 |
| MssI | GTTTAAAC | 1 cut(s) | 1063 |
| MunI | CAATTG | 2 cut(s) | 1625, 2700 |
| Mva1269I | GAATGC | 1 cut(s) | 2763 |
| MvnI | CGCG | 1 cut(s) | 1049 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 15, 515, 1124, 1454, 2077 |
| NdeI | CATATG | 1 cut(s) | 969 |
| NlaIV | GGNNCC | 7 cut(s) | 29, 47, 48, 1184, 2437, 2806, 2807 |
| NmeAIII | GCCGAG | 3 cut(s) | 103, 117, 1139 |
| NmuCI | GTSAC | 5 cut(s) | 464, 919, 997, 1091, 1961 |
| NsbI | TGCGCA | 2 cut(s) | 1403, 2381 |
| NspI | RCATGY | 2 cut(s) | 479, 1908 |
| OliI | CACNNNNGTG | 1 cut(s) | 2344 |
| PciI | ACATGT | 2 cut(s) | 475, 1904 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2200 |
| PctI | GAATGC | 1 cut(s) | 2763 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1431, 2763 |
| PfeI | GAWTC | 5 cut(s) | 1099, 1240, 1691, 2324, 2737 |
| PfoI | TCCNGGA | 3 cut(s) | 1032, 2292, 2524 |
| PkrI | GCNGC | 4 cut(s) | 280, 511, 1048, 1804 |
| PleI | GAGTC | 6 cut(s) | 32, 100, 532, 550, 1999, 2644 |
| PmeI | GTTTAAAC | 1 cut(s) | 1063 |
| PpsI | GAGTC | 6 cut(s) | 32, 100, 532, 550, 1999, 2644 |
| Ppu21I | YACGTR | 1 cut(s) | 1766 |
| PpuMI | RGGWCCY | 2 cut(s) | 46, 2805 |
| PscI | ACATGT | 2 cut(s) | 475, 1904 |
| PshBI | ATTAAT | 1 cut(s) | 533 |
| PsiI | TTATAA | 1 cut(s) | 2667 |
| Psp1406I | AACGTT | 1 cut(s) | 2610 |
| Psp5II | RGGWCCY | 2 cut(s) | 46, 2805 |
| PspN4I | GGNNCC | 7 cut(s) | 29, 47, 48, 1184, 2437, 2806, 2807 |
| PspPI | GGNCC | 7 cut(s) | 28, 46, 72, 1189, 1441, 2720, 2805 |
| PspPPI | RGGWCCY | 2 cut(s) | 46, 2805 |
| PstNI | CAGNNNCTG | 1 cut(s) | 782 |
| PsuI | RGATCY | 7 cut(s) | 373, 703, 1577, 1648, 2154, 2528, 2659 |
| RsaI | GTAC | 4 cut(s) | 639, 656, 884, 2222 |
| RsaNI | GTAC | 4 cut(s) | 638, 655, 883, 2221 |
| RseI | CAYNNNNRTG | 3 cut(s) | 732, 1794, 2344 |
| Rsr2I | CGGWCCG | 1 cut(s) | 72 |
| RsrII | CGGWCCG | 1 cut(s) | 72 |
| SatI | GCNGC | 4 cut(s) | 279, 510, 1047, 1803 |
| Sau96I | GGNCC | 7 cut(s) | 28, 46, 72, 1189, 1441, 2720, 2805 |
| SchI | GAGTC | 6 cut(s) | 32, 101, 533, 550, 2000, 2644 |
| SduI | GDGCHC | 1 cut(s) | 1778 |
| SfaNI | GCATC | 5 cut(s) | 496, 769, 1297, 1298, 1354 |
| SinI | GGWCC | 6 cut(s) | 28, 46, 72, 1441, 2720, 2805 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 732, 1794, 2344 |
| SmlI | CTYRAG | 5 cut(s) | 558, 689, 1193, 2039, 2489 |
| SmoI | CTYRAG | 5 cut(s) | 558, 689, 1193, 2039, 2489 |
| SsiI | CCGC | 5 cut(s) | 70, 75, 616, 973, 1047 |
| SspI | AATATT | 2 cut(s) | 531, 1944 |
| SspMI | CTAG | 3 cut(s) | 101, 1593, 2271 |
| StyI | CCWWGG | 1 cut(s) | 2265 |
| TaaI | ACNGT | 4 cut(s) | 32, 1142, 2096, 2191 |
| TaiI | ACGT | 5 cut(s) | 309, 1162, 1689, 1768, 2613 |
| TaqI | TCGA | 6 cut(s) | 108, 483, 1020, 1645, 2203, 2833 |
| TatI | WGTACW | 2 cut(s) | 882, 2220 |
| TauI | GCSGC | 1 cut(s) | 1049 |
| TfiI | GAWTC | 5 cut(s) | 1099, 1240, 1691, 2324, 2737 |
| TscAI | CASTG | 3 cut(s) | 656, 1879, 2140 |
| TseFI | GTSAC | 5 cut(s) | 464, 919, 997, 1091, 1961 |
| TseI | GCWGC | 3 cut(s) | 278, 509, 1802 |
| Tsp45I | GTSAC | 5 cut(s) | 464, 919, 997, 1091, 1961 |
| TspDTI | ATGAA | 9 cut(s) | 467, 716, 798, 1342, 1722, 1770, 1936, 2163, 2316 |
| TspGWI | ACGGA | 1 cut(s) | 837 |
| TspRI | CASTG | 3 cut(s) | 656, 1879, 2140 |
| Vha464I | CTTAAG | 2 cut(s) | 689, 1193 |
| VpaK11BI | GGWCC | 6 cut(s) | 28, 46, 72, 1441, 2720, 2805 |
| VspI | ATTAAT | 1 cut(s) | 533 |
| XapI | RAATTY | 8 cut(s) | 500, 770, 899, 990, 1121, 2170, 2278, 2705 |
| XceI | RCATGY | 2 cut(s) | 479, 1908 |
| XmiI | GTMKAC | 1 cut(s) | 2350 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1431, 2763 |
| XspI | CTAG | 3 cut(s) | 101, 1593, 2271 |