Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001971

Physical Location & Seq

Genomic Coordinates Forward (+)

12336934 .. 12339086

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g13140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGCGGCTACCAGAGCCGAAAGCGGGACCACGGCGACTCATGGGTCCCCAGGAAGAAGAAGGTCATGCGCACAGCCGAGGAGGAGCTGGAGTCCAAGCTAGGGTTCGACCTATTCTCCGAAGGCGATACCAGGCTTGGCTGGTTGCTCAATTTCGCCACTTCATCTTGGGAGGATCAAGAGACCCGTAAATTATATAGTTGTGTCGATTTGTATTTCGTTTCACAGGATGGTTCTACTTTTAAGTCAAAATACAAGTTTCGCCCTTATTTCTATGCAGCAACTAAGGAGAAAATGGAAATGGACGTTGAAGCATATTTGAGACGGCGTTATCAAAATCAAATTGCTGATGTTCAAATAATGCAGAAAGAAGATCTTGATCTCAAAAATCATTTGTCTGGCCTTCGCAAGTCCTACCTAAAGCTATCATTCGATAACGTTCAACAACTAATGAATGTCAAGAGTGACCTACTGCATGTCGTCGAAAGAAATTGTGCCAAATTTGATGCTGCAGAAGCTTATGAGTCAATATTAATTGGGAAACGAGAACAAAGGACTCAAGATTTTCTAGATTGTATTGTTCGATCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000228 GO:0000278 GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006272 GO:0006281 GO:0006284 GO:0006287 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0008296 GO:0008297 GO:0008310 GO:0008408 GO:0008622 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0018130 GO:0019438 GO:0022402 GO:0022616 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045004 GO:0045005 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DUF1744

Protein Analysis

198

Amino Acids

23.27

Weight (kDa)

8.31

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08260 AT1G08260 AT2G27120 AT2G27120
fragaria_vesca	FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570
malus_domestica	MD03G1139200.v1.1 MD11G1160700.v1.1
prunus_persica	Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1
pyrus_communis	pycom03g09420 pycom03g09430 pycom11g13140 pycom11g13150
rosa_chinensis	RchiOBHm_Chr5g0054631 RchiOBHm_Chr5g0054881
rosa_laevigata	RLG00000034941
rosa_multiflora	Rmu_co8010264.1_g000001 Rmu_sc0023829.1_g000001 Rmu_sc0027854.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025840 Rroxscaffold_1G00026110 Rroxscaffold_1G00026140 Rroxscaffold_1G00026150 Rroxscaffold_1G00026330
rosa_rugosa	Rorug05G0287100 Rorug05G0287100
rosa_samantha	Rh5AG357600 Rh5AG358300 Rh5BG369700 Rh5CG392300 Rh5DG383300
rosa_wichuraiana	Rw5G033580 Rw5G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
Acc16I	TGCGCA	1 cut(s)	71
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	2 cut(s)	6, 25
AclI	AACGTT	1 cut(s)	438
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	25, 102
AgsI	TTSAA	3 cut(s)	311, 356, 443
AjnI	CCWGG	2 cut(s)	50, 131
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	4 cut(s)	88, 100, 424, 518
AluI	AGCT	4 cut(s)	88, 100, 424, 518
Alw26I	GTCTC	2 cut(s)	176, 316
AlwI	GGATC	1 cut(s)	183
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	2 cut(s)	278, 509
ApoI	RAATTY	1 cut(s)	500
AseI	ATTAAT	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	28, 46
AvaII	GGWCC	2 cut(s)	28, 46
BbvI	GCAGC	2 cut(s)	290, 496
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	2 cut(s)	49, 341
BciT130I	CCWGG	2 cut(s)	52, 133
BcoDI	GTCTC	2 cut(s)	176, 316
BfaI	CTAG	2 cut(s)	101, 569
BfmI	CTRYAG	1 cut(s)	510
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	3 cut(s)	7, 279, 510
BlsI	GCNGC	3 cut(s)	8, 280, 511
Bme1390I	CCNGG	2 cut(s)	52, 133
Bme18I	GGWCC	2 cut(s)	28, 46
BmgT120I	GGNCC	2 cut(s)	28, 46
BmiI	GGNNCC	3 cut(s)	29, 47, 48
BmrFI	CCNGG	2 cut(s)	52, 133
BmsI	GCATC	1 cut(s)	496
BpmI	CTGGAG	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	31, 50, 78
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 101, 107, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 102
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	52, 133
BseDI	CCNNGG	3 cut(s)	31, 50, 78
BseGI	GGATG	1 cut(s)	235
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	2 cut(s)	25, 102
BseRI	GAGGAG	2 cut(s)	95, 98
BseXI	GCAGC	2 cut(s)	290, 496
BshFI	GGCC	1 cut(s)	402
BslFI	GGGAC	2 cut(s)	32, 41
BslI	CCNNNNNNNGG	2 cut(s)	25, 102
BsmAI	GTCTC	2 cut(s)	176, 316
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	2 cut(s)	32, 41
BsnI	GGCC	1 cut(s)	402
Bso31I	GGTCTC	1 cut(s)	176
Bsp143I	GATC	4 cut(s)	175, 373, 379, 584
BspACI	CCGC	2 cut(s)	6, 25
BspANI	GGCC	1 cut(s)	402
BspLI	GGNNCC	3 cut(s)	29, 47, 48
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	1 cut(s)	183
BspTNI	GGTCTC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	31, 50, 78
BssMI	GATC	4 cut(s)	175, 373, 379, 584
Bst2UI	CCWGG	2 cut(s)	52, 133
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	4 cut(s)	178, 376, 382, 587
BstMAI	GTCTC	2 cut(s)	176, 316
BstMBI	GATC	4 cut(s)	175, 373, 379, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 515
BstNI	CCWGG	2 cut(s)	52, 133
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	2 cut(s)	50, 131
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	290, 496
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	402
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	235
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	28, 46
CviAII	CATG	3 cut(s)	42, 67, 476
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	4 cut(s)	177, 375, 381, 586
DpnII	GATC	4 cut(s)	175, 373, 379, 584
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	2 cut(s)	28, 46
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	50, 131
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	3 cut(s)	45, 70, 479
FaiI	YATR	8 cut(s)	43, 68, 196, 198, 276, 316, 477, 522
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	2 cut(s)	32, 41
FatI	CATG	3 cut(s)	41, 66, 475
FauI	CCCGC	1 cut(s)	18
Fnu4HI	GCNGC	3 cut(s)	7, 279, 510
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	7, 279, 510
FspAI	RTGCGCAY	1 cut(s)	71
FspBI	CTAG	2 cut(s)	101, 569
FspI	TGCGCA	1 cut(s)	71
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	3 cut(s)	7, 279, 510
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	402
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	45, 70, 479
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	4 cut(s)	38, 92, 524, 556
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	6 cut(s)	179, 377, 460, 560, 569, 591
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	3 cut(s)	55, 116, 413
HpyCH4IV	ACGT	2 cut(s)	306, 438
HpyCH4V	TGCA	4 cut(s)	278, 364, 475, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 515
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	2 cut(s)	306, 438
Hsp92II	CATG	3 cut(s)	45, 70, 479
HspAI	GCGC	1 cut(s)	70
KflI	GGGWCCC	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	175, 373, 379, 584
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	9 cut(s)	26, 37, 64, 74, 118, 127, 145, 212, 384
Lsp1109I	GCAGC	2 cut(s)	290, 496
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	101, 569
MaeII	ACGT	2 cut(s)	306, 438
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	4 cut(s)	177, 375, 381, 586
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	4 cut(s)	175, 373, 379, 584
MboII	GAAGA	4 cut(s)	67, 70, 383, 579
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	6 cut(s)	151, 191, 342, 490, 500, 534
MlyI	GAGTC	4 cut(s)	32, 101, 533, 550
MnlI	CCTC	3 cut(s)	73, 76, 166
MseI	TTAA	2 cut(s)	243, 533
MspR9I	CCNGG	2 cut(s)	52, 133
MvaI	CCWGG	2 cut(s)	52, 133
MwoI	GCNNNNNNNGC	2 cut(s)	15, 515
NdeII	GATC	4 cut(s)	175, 373, 379, 584
NlaIII	CATG	3 cut(s)	45, 70, 479
NlaIV	GGNNCC	3 cut(s)	29, 47, 48
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	464
NsbI	TGCGCA	1 cut(s)	71
NspI	RCATGY	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	8, 280, 511
PleI	GAGTC	4 cut(s)	32, 100, 532, 550
PpsI	GAGTC	4 cut(s)	32, 100, 532, 550
PpuMI	RGGWCCY	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	533
Psp1406I	AACGTT	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	50, 131
PspGI	CCWGG	2 cut(s)	50, 131
PspN4I	GGNNCC	3 cut(s)	29, 47, 48
PspPI	GGNCC	2 cut(s)	28, 46
PspPPI	RGGWCCY	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	243, 533
SatI	GCNGC	3 cut(s)	7, 279, 510
Sau3AI	GATC	4 cut(s)	175, 373, 379, 584
Sau96I	GGNCC	2 cut(s)	28, 46
SchI	GAGTC	4 cut(s)	32, 101, 533, 550
ScrFI	CCNGG	2 cut(s)	52, 133
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	2 cut(s)	28, 46
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
Sse9I	AATT	6 cut(s)	151, 191, 342, 490, 500, 534
SsiI	CCGC	2 cut(s)	6, 25
SspI	AATATT	1 cut(s)	531
SspMI	CTAG	2 cut(s)	101, 569
StyD4I	CCNGG	2 cut(s)	50, 131
TaiI	ACGT	2 cut(s)	309, 441
TaqI	TCGA	5 cut(s)	108, 207, 432, 483, 583
TasI	AATT	6 cut(s)	151, 191, 342, 490, 500, 534
TauI	GCSGC	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	243, 533
Tru9I	TTAA	2 cut(s)	243, 533
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	2 cut(s)	278, 509
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	153, 467
VpaK11BI	GGWCC	2 cut(s)	28, 46
VspI	ATTAAT	1 cut(s)	533
XapI	RAATTY	1 cut(s)	500
XbaI	TCTAGA	1 cut(s)	568
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	2 cut(s)	101, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.