DNA polymerase epsilon catalytic subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08260 AT1G08260 AT2G27120 AT2G27120 |
| fragaria_vesca | FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 |
| malus_domestica | MD03G1139200.v1.1 MD11G1160700.v1.1 |
| prunus_persica | Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 |
| pyrus_communis | pycom03g09420 pycom03g09430 pycom11g13140 pycom11g13150 |
| rosa_chinensis | RchiOBHm_Chr5g0054631 RchiOBHm_Chr5g0054881 |
| rosa_laevigata | RLG00000034941 |
| rosa_multiflora | Rmu_co8010264.1_g000001 Rmu_sc0023829.1_g000001 Rmu_sc0027854.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00025840 Rroxscaffold_1G00026110 Rroxscaffold_1G00026140 Rroxscaffold_1G00026150 Rroxscaffold_1G00026330 |
| rosa_rugosa | Rorug05G0287100 Rorug05G0287100 |
| rosa_samantha | Rh5AG357600 Rh5AG358300 Rh5BG369700 Rh5CG392300 Rh5DG383300 |
| rosa_wichuraiana | Rw5G033580 Rw5G033790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 203 |
| Acc16I | TGCGCA | 2 cut(s) | 427, 1190 |
| Acc36I | ACCTGC | 1 cut(s) | 1072 |
| Acc65I | GGTACC | 1 cut(s) | 1565 |
| AccB1I | GGYRCC | 1 cut(s) | 1565 |
| AccI | GTMKAC | 1 cut(s) | 207 |
| AciI | CCGC | 4 cut(s) | 691, 824, 1408, 1875 |
| AclI | AACGTT | 1 cut(s) | 749 |
| AclWI | GGATC | 4 cut(s) | 890, 1228, 1640, 2295 |
| AcoI | YGGCCR | 1 cut(s) | 2179 |
| AcsI | RAATTY | 4 cut(s) | 230, 914, 1618, 2210 |
| AcuI | CTGAAG | 1 cut(s) | 1848 |
| AcyI | GRCGYC | 1 cut(s) | 204 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1777, 2280 |
| AflIII | ACRYGT | 1 cut(s) | 956 |
| AgeI | ACCGGT | 2 cut(s) | 675, 1715 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1442 |
| AjnI | CCWGG | 4 cut(s) | 409, 664, 1846, 2661 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1191, 1223 |
| AluBI | AGCT | 7 cut(s) | 284, 562, 1109, 1306, 1475, 2510, 2631 |
| AluI | AGCT | 7 cut(s) | 284, 562, 1109, 1306, 1475, 2510, 2631 |
| Alw21I | GWGCWC | 2 cut(s) | 418, 1326 |
| Alw26I | GTCTC | 3 cut(s) | 459, 947, 1915 |
| AlwI | GGATC | 4 cut(s) | 890, 1228, 1640, 2295 |
| AoxI | GGCC | 6 cut(s) | 731, 992, 1046, 2179, 2438, 2617 |
| ApeKI | GCWGC | 4 cut(s) | 5, 126, 1377, 1475 |
| ApoI | RAATTY | 4 cut(s) | 230, 914, 1618, 2210 |
| AseI | ATTAAT | 2 cut(s) | 1985, 2159 |
| AsiGI | ACCGGT | 2 cut(s) | 675, 1715 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1791 |
| Asp718I | GGTACC | 1 cut(s) | 1565 |
| AspLEI | GCGC | 2 cut(s) | 428, 1191 |
| AspS9I | GGNCC | 5 cut(s) | 292, 731, 740, 1046, 2438 |
| AsuHPI | GGTGA | 8 cut(s) | 85, 178, 449, 617, 1598, 1730, 2096, 2387 |
| AvaII | GGWCC | 2 cut(s) | 292, 740 |
| AxyI | CCTNAGG | 1 cut(s) | 329 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1549, 1582 |
| BanI | GGYRCC | 1 cut(s) | 1565 |
| BanII | GRGCYC | 3 cut(s) | 409, 1503, 2102 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 823, 855 |
| BbsI | GAAGAC | 3 cut(s) | 333, 678, 1438 |
| Bbv12I | GWGCWC | 2 cut(s) | 418, 1326 |
| BbvI | GCAGC | 3 cut(s) | 113, 1389, 1462 |
| BccI | CCATC | 5 cut(s) | 1091, 1480, 1502, 1646, 2609 |
| BceAI | ACGGC | 3 cut(s) | 208, 979, 2166 |
| BciT130I | CCWGG | 4 cut(s) | 411, 666, 1848, 2663 |
| BciVI | GTATCC | 2 cut(s) | 500, 2480 |
| BclI | TGATCA | 1 cut(s) | 2151 |
| BcoDI | GTCTC | 3 cut(s) | 459, 947, 1915 |
| BfaI | CTAG | 5 cut(s) | 828, 1041, 2589, 2601, 2649 |
| BfmI | CTRYAG | 1 cut(s) | 1476 |
| BfuAI | ACCTGC | 1 cut(s) | 1072 |
| BfuI | GTATCC | 2 cut(s) | 500, 2480 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1386 |
| BglII | AGATCT | 1 cut(s) | 2060 |
| BisI | GCNGC | 4 cut(s) | 6, 127, 1378, 1476 |
| BlsI | GCNGC | 4 cut(s) | 7, 128, 1379, 1477 |
| BmcAI | AGTACT | 1 cut(s) | 1733 |
| Bme1390I | CCNGG | 4 cut(s) | 411, 666, 1848, 2663 |
| Bme18I | GGWCC | 2 cut(s) | 292, 740 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1442 |
| BmgT120I | GGNCC | 5 cut(s) | 292, 731, 740, 1046, 2438 |
| BmiI | GGNNCC | 5 cut(s) | 408, 663, 1086, 1128, 1567 |
| BmrFI | CCNGG | 4 cut(s) | 411, 666, 1848, 2663 |
| BmrI | ACTGGG | 3 cut(s) | 206, 1132, 1570 |
| BmsI | GCATC | 6 cut(s) | 376, 766, 1822, 2004, 2227, 2320 |
| BmuI | ACTGGG | 3 cut(s) | 206, 1132, 1570 |
| BpiI | GAAGAC | 3 cut(s) | 333, 678, 1438 |
| BpmI | CTGGAG | 4 cut(s) | 393, 687, 2073, 2532 |
| BpuEI | CTTGAG | 2 cut(s) | 1854, 1955 |
| BsaAI | YACGTR | 1 cut(s) | 959 |
| BsaHI | GRCGYC | 1 cut(s) | 204 |
| BsaI | GGTCTC | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 1 cut(s) | 2661 |
| BsaWI | WCCGGW | 2 cut(s) | 675, 1715 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1951, 1981 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1777, 2280 |
| Bse118I | RCCGGY | 2 cut(s) | 675, 1715 |
| Bse21I | CCTNAGG | 1 cut(s) | 329 |
| Bse3DI | GCAATG | 1 cut(s) | 2212 |
| BseBI | CCWGG | 4 cut(s) | 411, 666, 1848, 2663 |
| BseDI | CCNNGG | 1 cut(s) | 2661 |
| BseGI | GGATG | 6 cut(s) | 1600, 2218, 2359, 2464, 2545, 2581 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1777, 2280 |
| BseMI | GCAATG | 1 cut(s) | 2212 |
| BseMII | CTCAG | 5 cut(s) | 272, 343, 1485, 1926, 2140 |
| BseRI | GAGGAG | 1 cut(s) | 1742 |
| BseXI | GCAGC | 3 cut(s) | 113, 1389, 1462 |
| BseYI | CCCAGC | 1 cut(s) | 2387 |
| BshFI | GGCC | 6 cut(s) | 733, 994, 1048, 2181, 2440, 2619 |
| BshNI | GGYRCC | 1 cut(s) | 1565 |
| BshTI | ACCGGT | 2 cut(s) | 675, 1715 |
| BsiHKAI | GWGCWC | 2 cut(s) | 418, 1326 |
| BsiSI | CCGG | 2 cut(s) | 676, 1716 |
| BslFI | GGGAC | 3 cut(s) | 1168, 1560, 1769 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1777, 2280 |
| BsmAI | GTCTC | 3 cut(s) | 459, 947, 1915 |
| BsmFI | GGGAC | 3 cut(s) | 1168, 1560, 1769 |
| BsmI | GAATGC | 3 cut(s) | 999, 1165, 2391 |
| BsnI | GGCC | 6 cut(s) | 733, 994, 1048, 2181, 2440, 2619 |
| Bso31I | GGTCTC | 1 cut(s) | 459 |
| Bsp1286I | GDGCHC | 5 cut(s) | 409, 418, 1326, 1503, 2102 |
| Bsp143I | GATC | 7 cut(s) | 895, 1220, 1588, 1632, 2060, 2151, 2287 |
| BspACI | CCGC | 4 cut(s) | 691, 824, 1408, 1875 |
| BspANI | GGCC | 6 cut(s) | 733, 994, 1048, 2181, 2440, 2619 |
| BspCNI | CTCAG | 5 cut(s) | 271, 342, 1484, 1925, 2139 |
| BspLI | GGNNCC | 5 cut(s) | 408, 663, 1086, 1128, 1567 |
| BspMAI | CTGCAG | 1 cut(s) | 1480 |
| BspMI | ACCTGC | 1 cut(s) | 1072 |
| BspPI | GGATC | 4 cut(s) | 890, 1228, 1640, 2295 |
| BspT107I | GGYRCC | 1 cut(s) | 1565 |
| BspTNI | GGTCTC | 1 cut(s) | 459 |
| BsrDI | GCAATG | 1 cut(s) | 2212 |
| BsrFI | RCCGGY | 2 cut(s) | 675, 1715 |
| BssAI | RCCGGY | 2 cut(s) | 675, 1715 |
| BssECI | CCNNGG | 1 cut(s) | 2661 |
| BssMI | GATC | 7 cut(s) | 895, 1220, 1588, 1632, 2060, 2151, 2287 |
| BssNI | GRCGYC | 1 cut(s) | 204 |
| Bst2UI | CCWGG | 4 cut(s) | 411, 666, 1848, 2663 |
| Bst4CI | ACNGT | 6 cut(s) | 470, 576, 584, 611, 1342, 2079 |
| Bst6I | CTCTTC | 1 cut(s) | 2448 |
| BstACI | GRCGYC | 1 cut(s) | 204 |
| BstBAI | YACGTR | 1 cut(s) | 959 |
| BstC8I | GCNNGC | 3 cut(s) | 418, 1165, 1288 |
| BstDEI | CTNAG | 7 cut(s) | 258, 329, 694, 1471, 1912, 2126, 2632 |
| BstF5I | GGATG | 6 cut(s) | 1600, 2218, 2359, 2464, 2545, 2581 |
| BstHHI | GCGC | 2 cut(s) | 428, 1191 |
| BstKTI | GATC | 7 cut(s) | 898, 1223, 1591, 1635, 2063, 2154, 2290 |
| BstMAI | GTCTC | 3 cut(s) | 459, 947, 1915 |
| BstMBI | GATC | 7 cut(s) | 895, 1220, 1588, 1632, 2060, 2151, 2287 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 201, 413, 937, 1386, 1832, 1881 |
| BstNI | CCWGG | 4 cut(s) | 411, 666, 1848, 2663 |
| BstSCI | CCNGG | 4 cut(s) | 409, 664, 1846, 2661 |
| BstSFI | CTRYAG | 1 cut(s) | 1476 |
| BstV1I | GCAGC | 3 cut(s) | 113, 1389, 1462 |
| BstV2I | GAAGAC | 3 cut(s) | 333, 678, 1438 |
| BstX2I | RGATCY | 2 cut(s) | 2060, 2287 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1652 |
| BstYI | RGATCY | 2 cut(s) | 2060, 2287 |
| Bsu36I | CCTNAGG | 1 cut(s) | 329 |
| BsuI | GTATCC | 2 cut(s) | 500, 2480 |
| BsuRI | GGCC | 6 cut(s) | 733, 994, 1048, 2181, 2440, 2619 |
| BtsCI | GGATG | 6 cut(s) | 1600, 2218, 2359, 2464, 2545, 2581 |
| BtsIMutI | CAGTG | 8 cut(s) | 428, 616, 1049, 1120, 1252, 1338, 1533, 1558 |
| BveI | ACCTGC | 1 cut(s) | 1072 |
| Cac8I | GCNNGC | 3 cut(s) | 418, 1165, 1288 |
| CfoI | GCGC | 2 cut(s) | 428, 1191 |
| Cfr10I | RCCGGY | 2 cut(s) | 675, 1715 |
| Cfr13I | GGNCC | 5 cut(s) | 292, 731, 740, 1046, 2438 |
| CseI | GACGC | 3 cut(s) | 193, 1100, 1766 |
| CspAI | ACCGGT | 2 cut(s) | 675, 1715 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1062, 1097 |
| DdeI | CTNAG | 7 cut(s) | 258, 329, 694, 1471, 1912, 2126, 2632 |
| DpnI | GATC | 7 cut(s) | 897, 1222, 1590, 1634, 2062, 2153, 2289 |
| DpnII | GATC | 7 cut(s) | 895, 1220, 1588, 1632, 2060, 2151, 2287 |
| DraI | TTTAAA | 2 cut(s) | 919, 1579 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 203 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1442 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 203 |
| EaeI | YGGCCR | 1 cut(s) | 2179 |
| Eam1104I | CTCTTC | 1 cut(s) | 2448 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1442 |
| EarI | CTCTTC | 1 cut(s) | 2448 |
| EciI | GGCGGA | 1 cut(s) | 1890 |
| Eco24I | GRGCYC | 3 cut(s) | 409, 1503, 2102 |
| Eco31I | GGTCTC | 1 cut(s) | 459 |
| Eco47I | GGWCC | 2 cut(s) | 292, 740 |
| Eco57I | CTGAAG | 1 cut(s) | 1848 |
| Eco81I | CCTNAGG | 1 cut(s) | 329 |
| EcoO109I | RGGNCCY | 2 cut(s) | 292, 2438 |
| EcoRII | CCWGG | 4 cut(s) | 409, 664, 1846, 2661 |
| EcoT38I | GRGCYC | 3 cut(s) | 409, 1503, 2102 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 920, 952 |
| FaqI | GGGAC | 3 cut(s) | 1168, 1560, 1769 |
| FauI | CCCGC | 1 cut(s) | 831 |
| FbaI | TGATCA | 1 cut(s) | 2151 |
| FblI | GTMKAC | 1 cut(s) | 207 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 127, 1378, 1476 |
| FokI | GGATG | 6 cut(s) | 1607, 2205, 2366, 2451, 2552, 2588 |
| FriOI | GRGCYC | 3 cut(s) | 409, 1503, 2102 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 127, 1378, 1476 |
| FspBI | CTAG | 5 cut(s) | 828, 1041, 2589, 2601, 2649 |
| FspI | TGCGCA | 2 cut(s) | 427, 1190 |
| GlaI | GCGC | 2 cut(s) | 427, 1190 |
| GluI | GCNGC | 4 cut(s) | 6, 127, 1378, 1476 |
| GsaI | CCCAGC | 1 cut(s) | 2391 |
| GsuI | CTGGAG | 4 cut(s) | 393, 687, 2073, 2532 |
| HaeIII | GGCC | 6 cut(s) | 733, 994, 1048, 2181, 2440, 2619 |
| HapII | CCGG | 2 cut(s) | 676, 1716 |
| HgaI | GACGC | 3 cut(s) | 193, 1100, 1766 |
| HhaI | GCGC | 2 cut(s) | 428, 1191 |
| Hin1I | GRCGYC | 1 cut(s) | 204 |
| Hin6I | GCGC | 2 cut(s) | 426, 1189 |
| HinP1I | GCGC | 2 cut(s) | 426, 1189 |
| HincII | GTYRAC | 2 cut(s) | 143, 208 |
| HindII | GTYRAC | 2 cut(s) | 143, 208 |
| HindIII | AAGCTT | 2 cut(s) | 282, 1107 |
| HinfI | GANTC | 2 cut(s) | 90, 2474 |
| HpaII | CCGG | 2 cut(s) | 676, 1716 |
| HphI | GGTGA | 8 cut(s) | 85, 178, 449, 617, 1598, 1730, 2096, 2387 |
| Hpy166II | GTNNAC | 7 cut(s) | 33, 143, 208, 1713, 1859, 2325, 2668 |
| Hpy188I | TCNGA | 6 cut(s) | 1225, 1915, 2129, 2156, 2624, 2682 |
| Hpy8I | GTNNAC | 7 cut(s) | 33, 143, 208, 1713, 1859, 2325, 2668 |
| Hpy99I | CGWCG | 2 cut(s) | 194, 209 |
| HpyCH4III | ACNGT | 6 cut(s) | 470, 576, 584, 611, 1342, 2079 |
| HpyCH4IV | ACGT | 2 cut(s) | 749, 958 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 201, 413, 937, 1386, 1832, 1881 |
| HpyF3I | CTNAG | 7 cut(s) | 258, 329, 694, 1471, 1912, 2126, 2632 |
| HpySE526I | ACGT | 2 cut(s) | 749, 958 |
| Hsp92I | GRCGYC | 1 cut(s) | 204 |
| HspAI | GCGC | 2 cut(s) | 426, 1189 |
| KpnI | GGTACC | 1 cut(s) | 1569 |
| Ksp22I | TGATCA | 1 cut(s) | 2151 |
| Kzo9I | GATC | 7 cut(s) | 895, 1220, 1588, 1632, 2060, 2151, 2287 |
| LmnI | GCTCC | 3 cut(s) | 412, 1011, 1959 |
| Lsp1109I | GCAGC | 3 cut(s) | 113, 1389, 1462 |
| LweI | GCATC | 6 cut(s) | 376, 766, 1822, 2004, 2227, 2320 |
| MaeI | CTAG | 5 cut(s) | 828, 1041, 2589, 2601, 2649 |
| MaeII | ACGT | 2 cut(s) | 749, 958 |
| MaeIII | GTNAC | 4 cut(s) | 605, 616, 830, 1718 |
| MalI | GATC | 7 cut(s) | 897, 1222, 1590, 1634, 2062, 2153, 2289 |
| MboI | GATC | 7 cut(s) | 895, 1220, 1588, 1632, 2060, 2151, 2287 |
| MfeI | CAATTG | 1 cut(s) | 2172 |
| MflI | RGATCY | 2 cut(s) | 2060, 2287 |
| MhlI | GDGCHC | 5 cut(s) | 409, 418, 1326, 1503, 2102 |
| MmeI | TCCRAC | 4 cut(s) | 1471, 2331, 2492, 2660 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1791 |
| MslI | CAYNNNNRTG | 3 cut(s) | 816, 1150, 2403 |
| MspA1I | CMGCKG | 2 cut(s) | 1306, 1475 |
| MspI | CCGG | 2 cut(s) | 676, 1716 |
| MspR9I | CCNGG | 4 cut(s) | 411, 666, 1848, 2663 |
| MunI | CAATTG | 1 cut(s) | 2172 |
| Mva1269I | GAATGC | 3 cut(s) | 999, 1165, 2391 |
| MvaI | CCWGG | 4 cut(s) | 411, 666, 1848, 2663 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 201, 413, 937, 1386, 1832, 1881 |
| NdeII | GATC | 7 cut(s) | 895, 1220, 1588, 1632, 2060, 2151, 2287 |
| NlaIV | GGNNCC | 5 cut(s) | 408, 663, 1086, 1128, 1567 |
| NmuCI | GTSAC | 2 cut(s) | 605, 1718 |
| NsbI | TGCGCA | 2 cut(s) | 427, 1190 |
| PctI | GAATGC | 3 cut(s) | 999, 1165, 2391 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1791 |
| PfeI | GAWTC | 2 cut(s) | 90, 2474 |
| PinAI | ACCGGT | 2 cut(s) | 675, 1715 |
| PkrI | GCNGC | 4 cut(s) | 7, 128, 1379, 1477 |
| Ppu21I | YACGTR | 1 cut(s) | 959 |
| PpuMI | RGGWCCY | 1 cut(s) | 292 |
| PshBI | ATTAAT | 2 cut(s) | 1985, 2159 |
| Psp1406I | AACGTT | 1 cut(s) | 749 |
| Psp5II | RGGWCCY | 1 cut(s) | 292 |
| Psp6I | CCWGG | 4 cut(s) | 409, 664, 1846, 2661 |
| PspFI | CCCAGC | 1 cut(s) | 2387 |
| PspGI | CCWGG | 4 cut(s) | 409, 664, 1846, 2661 |
| PspN4I | GGNNCC | 5 cut(s) | 408, 663, 1086, 1128, 1567 |
| PspPI | GGNCC | 5 cut(s) | 292, 731, 740, 1046, 2438 |
| PspPPI | RGGWCCY | 1 cut(s) | 292 |
| PstI | CTGCAG | 1 cut(s) | 1480 |
| PsuI | RGATCY | 2 cut(s) | 2060, 2287 |
| PvuII | CAGCTG | 2 cut(s) | 1306, 1475 |
| RseI | CAYNNNNRTG | 3 cut(s) | 816, 1150, 2403 |
| SalI | GTCGAC | 1 cut(s) | 206 |
| SatI | GCNGC | 4 cut(s) | 6, 127, 1378, 1476 |
| Sau3AI | GATC | 7 cut(s) | 895, 1220, 1588, 1632, 2060, 2151, 2287 |
| Sau96I | GGNCC | 5 cut(s) | 292, 731, 740, 1046, 2438 |
| ScaI | AGTACT | 1 cut(s) | 1733 |
| ScrFI | CCNGG | 4 cut(s) | 411, 666, 1848, 2663 |
| SduI | GDGCHC | 5 cut(s) | 409, 418, 1326, 1503, 2102 |
| SfaNI | GCATC | 6 cut(s) | 376, 766, 1822, 2004, 2227, 2320 |
| SfcI | CTRYAG | 1 cut(s) | 1476 |
| SinI | GGWCC | 2 cut(s) | 292, 740 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 816, 1150, 2403 |
| SmlI | CTYRAG | 2 cut(s) | 1869, 1934 |
| SmoI | CTYRAG | 2 cut(s) | 1869, 1934 |
| SsiI | CCGC | 4 cut(s) | 691, 824, 1408, 1875 |
| SspI | AATATT | 2 cut(s) | 309, 2585 |
| SspMI | CTAG | 5 cut(s) | 828, 1041, 2589, 2601, 2649 |
| StyD4I | CCNGG | 4 cut(s) | 409, 664, 1846, 2661 |
| TaaI | ACNGT | 6 cut(s) | 470, 576, 584, 611, 1342, 2079 |
| TaiI | ACGT | 2 cut(s) | 752, 961 |
| TaqI | TCGA | 7 cut(s) | 207, 234, 370, 951, 1616, 2278, 2331 |
| TatI | WGTACW | 6 cut(s) | 564, 889, 1017, 1731, 1979, 2527 |
| TfiI | GAWTC | 2 cut(s) | 90, 2474 |
| TscAI | CASTG | 8 cut(s) | 435, 616, 1056, 1127, 1252, 1345, 1540, 1565 |
| TseFI | GTSAC | 2 cut(s) | 605, 1718 |
| TseI | GCWGC | 4 cut(s) | 5, 126, 1377, 1475 |
| Tsp45I | GTSAC | 2 cut(s) | 605, 1718 |
| TspGWI | ACGGA | 4 cut(s) | 257, 1652, 2552, 2568 |
| TspRI | CASTG | 8 cut(s) | 435, 616, 1056, 1127, 1252, 1345, 1540, 1565 |
| VpaK11BI | GGWCC | 2 cut(s) | 292, 740 |
| VspI | ATTAAT | 2 cut(s) | 1985, 2159 |
| XapI | RAATTY | 4 cut(s) | 230, 914, 1618, 2210 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1953, 2048, 2612 |
| XmiI | GTMKAC | 1 cut(s) | 207 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1791 |
| XspI | CTAG | 5 cut(s) | 828, 1041, 2589, 2601, 2649 |
| ZrmI | AGTACT | 1 cut(s) | 1733 |