Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023829.1

Orthogroup ID

OG0001971

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1870

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023829.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ggaatatatgaagcaaaggtgccttcggagtttaatgtaatcactcagattggttgtgtctgtaaattggacaaaaaagctcagggagatgccaaaaatggctggagtgttagtgcactggacatgaagaatacgacagagtgctcttatctggcccaatccatcgctttcttttatttgtatcacagcatctctgaagggcgcgcaatatttgttgcttattttcctgcatcaagaacaataattgttgtggtggtgaatccttatcaaaataaagatttgtcaccatcttttcttgaaaaacaattccgcgacgcttgccaggcattatcacttcagctgcctcctaggaatggaatcattatcaaggtagactacgttggatatgtaaaggatgctgaaaagattttgcaccaagcaattaatgagcacaggtttgactacacattggttcttccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000228 GO:0000278 GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006272 GO:0006281 GO:0006284 GO:0006287 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0008296 GO:0008297 GO:0008310 GO:0008408 GO:0008622 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0018130 GO:0019438 GO:0022402 GO:0022616 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045004 GO:0045005 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DUF1744

Protein Analysis

153

Amino Acids

17.23

Weight (kDa)

7.81

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08260 AT1G08260 AT2G27120 AT2G27120
fragaria_vesca	FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570
malus_domestica	MD03G1139200.v1.1 MD11G1160700.v1.1
prunus_persica	Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1
pyrus_communis	pycom03g09420 pycom03g09430 pycom11g13140 pycom11g13150
rosa_chinensis	RchiOBHm_Chr5g0054631 RchiOBHm_Chr5g0054881
rosa_laevigata	RLG00000034941
rosa_multiflora	Rmu_co8010264.1_g000001 Rmu_sc0023829.1_g000001 Rmu_sc0027854.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025840 Rroxscaffold_1G00026110 Rroxscaffold_1G00026140 Rroxscaffold_1G00026150 Rroxscaffold_1G00026330
rosa_rugosa	Rorug05G0287100 Rorug05G0287100
rosa_samantha	Rh5AG357600 Rh5AG358300 Rh5BG369700 Rh5CG392300 Rh5DG383300
rosa_wichuraiana	Rw5G033580 Rw5G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	2 cut(s)	204, 312
AciI	CCGC	1 cut(s)	310
AcuI	CTGAAG	2 cut(s)	216, 320
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	2 cut(s)	80, 340
AluI	AGCT	2 cut(s)	80, 340
Alw21I	GWGCWC	3 cut(s)	118, 146, 432
Alw44I	GTGCAC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	153
ApaLI	GTGCAC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	340
AseI	ATTAAT	1 cut(s)	423
AspA2I	CCTAGG	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	204, 206
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	268, 276
AvrII	CCTAGG	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	19
Bbv12I	GWGCWC	3 cut(s)	118, 146, 432
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	2 cut(s)	170, 295
BciT130I	CCWGG	1 cut(s)	323
BfaI	CTAG	1 cut(s)	348
BisI	GCNGC	1 cut(s)	341
BlnI	CCTAGG	1 cut(s)	347
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	4 cut(s)	79, 198, 239, 385
BpmI	CTGGAG	1 cut(s)	124
Bpu10I	CCTNAGC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	347
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	2 cut(s)	59, 95
BseNI	ACTGG	1 cut(s)	123
BsePI	GCGCGC	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	327
Bsh1236I	CGCG	2 cut(s)	204, 312
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	3 cut(s)	118, 146, 432
BslI	CCNNNNNNNGG	1 cut(s)	353
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	3 cut(s)	118, 146, 432
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	58, 94
BspFNI	CGCG	2 cut(s)	204, 312
BspLI	GGNNCC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	347
BssHII	GCGCGC	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	204, 319
BstDEI	CTNAG	2 cut(s)	45, 81
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	2 cut(s)	204, 312
BstHHI	GCGC	2 cut(s)	204, 206
BstMWI	GCNNNNNNNGC	2 cut(s)	318, 323
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	118
BstUI	CGCG	2 cut(s)	204, 312
BstV1I	GCAGC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	155
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	204, 319
CfoI	GCGC	2 cut(s)	204, 206
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	1 cut(s)	323
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	4 cut(s)	80, 102, 155, 340
CviKI_1	RGCY	4 cut(s)	80, 102, 155, 340
DdeI	CTNAG	2 cut(s)	45, 81
Eco130I	CCWWGG	1 cut(s)	347
Eco57I	CTGAAG	2 cut(s)	216, 320
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	1 cut(s)	127
FaiI	YATR	4 cut(s)	7, 9, 125, 387
FatI	CATG	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	2 cut(s)	203, 205
GluI	GCNGC	1 cut(s)	341
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	155
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	2 cut(s)	204, 206
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	2 cut(s)	202, 204
HinP1I	GCGC	2 cut(s)	202, 204
HinfI	GANTC	2 cut(s)	259, 357
HphI	GGTGA	2 cut(s)	268, 276
Hpy166II	GTNNAC	2 cut(s)	116, 373
Hpy188I	TCNGA	3 cut(s)	28, 48, 196
Hpy188III	TCNNGA	2 cut(s)	234, 296
Hpy8I	GTNNAC	2 cut(s)	116, 373
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	33, 191
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	3 cut(s)	116, 230, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	318, 323
HpyF3I	CTNAG	2 cut(s)	45, 81
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	2 cut(s)	202, 204
LpnPI	CCDG	8 cut(s)	68, 88, 104, 137, 240, 308, 335, 418
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	4 cut(s)	79, 198, 239, 385
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	282
MboII	GAAGA	2 cut(s)	139, 446
MhlI	GDGCHC	3 cut(s)	118, 146, 432
MluCI	AATT	4 cut(s)	65, 243, 305, 420
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	1 cut(s)	354
MseI	TTAA	3 cut(s)	33, 423, 460
MspA1I	CMGCKG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	2 cut(s)	204, 312
MwoI	GCNNNNNNNGC	2 cut(s)	318, 323
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	282
PauI	GCGCGC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	259, 357
PkrI	GCNGC	1 cut(s)	342
PshBI	ATTAAT	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	154
PteI	GCGCGC	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	340
SaqAI	TTAA	3 cut(s)	33, 423, 460
SatI	GCNGC	1 cut(s)	341
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	3 cut(s)	118, 146, 432
SetI	ASST	6 cut(s)	21, 82, 342, 372, 381, 437
SfaNI	GCATC	4 cut(s)	79, 198, 239, 385
Sse9I	AATT	4 cut(s)	65, 243, 305, 420
SsiI	CCGC	1 cut(s)	310
SspI	AATATT	1 cut(s)	210
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	347
TaiI	ACGT	1 cut(s)	381
TasI	AATT	4 cut(s)	65, 243, 305, 420
TfiI	GAWTC	2 cut(s)	259, 357
Tru1I	TTAA	3 cut(s)	33, 423, 460
Tru9I	TTAA	3 cut(s)	33, 423, 460
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	282
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	2 cut(s)	24, 140
TspRI	CASTG	1 cut(s)	123
VneI	GTGCAC	1 cut(s)	114
VspI	ATTAAT	1 cut(s)	423
XmaJI	CCTAGG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.