Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8010264.1

Orthogroup ID

OG0001971

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 323

Gene Structure 323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8010264.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

atgcaacgatgtgctgcatcatctcagtggttgattgatagaatttctctctcaagatatgcacatgtaccattgggcaattttgaagttgactcccttatgcatacagctgatatcttcttttcaagagcattacgtgatagccagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000228 GO:0000278 GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006272 GO:0006281 GO:0006284 GO:0006287 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0008296 GO:0008297 GO:0008310 GO:0008408 GO:0008622 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0018130 GO:0019438 GO:0022402 GO:0022616 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045004 GO:0045005 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DUF1744

Protein Analysis

50

Amino Acids

5.77

Weight (kDa)

6.7

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08260 AT1G08260 AT2G27120 AT2G27120
fragaria_vesca	FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570
malus_domestica	MD03G1139200.v1.1 MD11G1160700.v1.1
prunus_persica	Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1
pyrus_communis	pycom03g09420 pycom03g09430 pycom11g13140 pycom11g13150
rosa_chinensis	RchiOBHm_Chr5g0054631 RchiOBHm_Chr5g0054881
rosa_laevigata	RLG00000034941
rosa_multiflora	Rmu_co8010264.1_g000001 Rmu_sc0023829.1_g000001 Rmu_sc0027854.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025840 Rroxscaffold_1G00026110 Rroxscaffold_1G00026140 Rroxscaffold_1G00026150 Rroxscaffold_1G00026330
rosa_rugosa	Rorug05G0287100 Rorug05G0287100
rosa_samantha	Rh5AG357600 Rh5AG358300 Rh5BG369700 Rh5CG392300 Rh5DG383300
rosa_wichuraiana	Rw5G033580 Rw5G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	86, 126
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	42
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmsI	GCATC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	37
BsaAI	YACGTR	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	2 cut(s)	110, 144
CviKI_1	RGCY	2 cut(s)	110, 144
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	105
FaeI	CATG	1 cut(s)	68
FaiI	YATR	4 cut(s)	60, 66, 101, 105
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
FspEI	CC	6 cut(s)	13, 59, 60, 84, 109, 110
GluI	GCNGC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	54, 126
Hpy8I	GTNNAC	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	4 cut(s)	4, 17, 62, 103
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	68
LweI	GCATC	1 cut(s)	26
MaeII	ACGT	1 cut(s)	136
MboII	GAAGA	1 cut(s)	109
MluCI	AATT	2 cut(s)	42, 79
MlyI	GAGTC	1 cut(s)	86
Mph1103I	ATGCAT	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	110
NlaIII	CATG	1 cut(s)	68
NsiI	ATGCAT	1 cut(s)	105
NspI	RCATGY	1 cut(s)	68
PciI	ACATGT	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	137
PscI	ACATGT	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	25
SatI	GCNGC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	86
SetI	ASST	2 cut(s)	112, 139
SfaNI	GCATC	1 cut(s)	26
SgeI	CNNG	3 cut(s)	66, 77, 138
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	42, 79
TaiI	ACGT	1 cut(s)	139
TasI	AATT	2 cut(s)	42, 79
TscAI	CASTG	1 cut(s)	32
TseI	GCWGC	1 cut(s)	14
TspRI	CASTG	1 cut(s)	32
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.