Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027854.1

Orthogroup ID

OG0001971

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1483

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027854.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 565 bp

cccccagtctaaacttcatgatccagcacttcaacgcctacttcacaaggtcatgaaaaaggtgcttttgattttattggatgagttccgcaaattgggtgcaactatcatatttgcaaatttctataaggttattatagacacaggaaaatttgatatatccgcagccaaagcttattgtgatagtgtgcttaaaactctccagaaaagagaactatttgagtggattgagcttgaaccattgcactactggcattctttgcttttcatggatcagtataattatggtggaattccggttagagctgatgaaagcatgcatggtgaatctcaagtggatatcgtatcgagctggaacattgctgaatacttacccaagaaaattcaggaccattttatttttattgtttctcagtttttgtatattccctggaattatgctcagaagcaatcggccgttagagcgactttacaggatggcagcagttgcacaccatcaattacggttgcaggtgctgagactttggaatctcacatgaccgattttcttaaaggacaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000228 GO:0000278 GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006272 GO:0006281 GO:0006284 GO:0006287 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0008296 GO:0008297 GO:0008310 GO:0008408 GO:0008622 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0018130 GO:0019438 GO:0022402 GO:0022616 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045004 GO:0045005 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DUF1744

Protein Analysis

187

Amino Acids

21.48

Weight (kDa)

6.42

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08260 AT1G08260 AT2G27120 AT2G27120
fragaria_vesca	FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570 FvH4_3g29570
malus_domestica	MD03G1139200.v1.1 MD11G1160700.v1.1
prunus_persica	Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1 Prupe.6G124200_v2.0.a1
pyrus_communis	pycom03g09420 pycom03g09430 pycom11g13140 pycom11g13150
rosa_chinensis	RchiOBHm_Chr5g0054631 RchiOBHm_Chr5g0054881
rosa_laevigata	RLG00000034941
rosa_multiflora	Rmu_co8010264.1_g000001 Rmu_sc0023829.1_g000001 Rmu_sc0027854.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025840 Rroxscaffold_1G00026110 Rroxscaffold_1G00026140 Rroxscaffold_1G00026150 Rroxscaffold_1G00026330
rosa_rugosa	Rorug05G0287100 Rorug05G0287100
rosa_samantha	Rh5AG357600 Rh5AG358300 Rh5BG369700 Rh5CG392300 Rh5DG383300
rosa_wichuraiana	Rw5G033580 Rw5G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	501
Acc36I	ACCTGC	1 cut(s)	501
AciI	CCGC	2 cut(s)	89, 163
AclWI	GGATC	2 cut(s)	15, 280
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	4 cut(s)	119, 150, 292, 382
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	33, 237
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	4 cut(s)	174, 233, 306, 352
AluI	AGCT	4 cut(s)	174, 233, 306, 352
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	15, 280
AlwNI	CAGNNNCTG	1 cut(s)	516
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	2 cut(s)	165, 481
ApoI	RAATTY	4 cut(s)	119, 150, 292, 382
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	389
BbvI	GCAGC	2 cut(s)	177, 493
BccI	CCATC	2 cut(s)	471, 503
BceAI	ACGGC	1 cut(s)	441
BciT130I	CCWGG	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	501
BisI	GCNGC	2 cut(s)	166, 482
BlsI	GCNGC	2 cut(s)	167, 483
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	431
BpmI	CTGGAG	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	5, 255
Bse3DI	GCAATG	2 cut(s)	240, 358
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	86, 482
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	2 cut(s)	240, 358
BseMII	CTCAG	3 cut(s)	426, 456, 508
BseNI	ACTGG	2 cut(s)	5, 255
BseX3I	CGGCCG	1 cut(s)	454
BseXI	GCAGC	2 cut(s)	177, 493
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	1 cut(s)	456
BsiEI	CGRYCG	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	513
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	20, 272
BspACI	CCGC	2 cut(s)	89, 163
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	3 cut(s)	425, 455, 509
BspHI	TCATGA	2 cut(s)	17, 52
BspMI	ACCTGC	1 cut(s)	501
BspPI	GGATC	2 cut(s)	15, 280
BsrDI	GCAATG	2 cut(s)	240, 358
BsrI	ACTGG	2 cut(s)	5, 255
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	2 cut(s)	20, 272
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	506
BstAPI	GCANNNNNTGC	2 cut(s)	260, 487
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	3 cut(s)	412, 442, 517
BstF5I	GGATG	2 cut(s)	86, 482
BstKTI	GATC	2 cut(s)	23, 275
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	2 cut(s)	20, 272
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 251, 260, 462, 487
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	177, 493
BstZI	CGGCCG	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	86, 482
BveI	ACCTGC	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	318
CaiI	CAGNNNCTG	1 cut(s)	516
CciI	TCATGA	2 cut(s)	17, 52
Cfr13I	GGNCC	1 cut(s)	389
CviAII	CATG	6 cut(s)	18, 53, 269, 317, 321, 536
CviJI	RGCY	6 cut(s)	168, 174, 233, 306, 352, 456
CviKI_1	RGCY	6 cut(s)	168, 174, 233, 306, 352, 456
DdeI	CTNAG	3 cut(s)	412, 442, 517
DpnI	GATC	2 cut(s)	22, 274
DpnII	GATC	2 cut(s)	20, 272
EaeI	YGGCCR	1 cut(s)	454
EagI	CGGCCG	1 cut(s)	454
EclXI	CGGCCG	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	389
Eco52I	CGGCCG	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	429
EcoRV	GATATC	1 cut(s)	341
EcoT22I	ATGCAT	1 cut(s)	322
FaeI	CATG	6 cut(s)	21, 56, 272, 320, 324, 539
FatI	CATG	6 cut(s)	17, 52, 268, 316, 320, 535
Fnu4HI	GCNGC	2 cut(s)	166, 482
FokI	GGATG	2 cut(s)	93, 489
Fsp4HI	GCNGC	2 cut(s)	166, 482
GluI	GCNGC	2 cut(s)	166, 482
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	1 cut(s)	297
Hin1II	CATG	6 cut(s)	21, 56, 272, 320, 324, 539
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	2 cut(s)	327, 528
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	336
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	4 cut(s)	18, 53, 203, 387
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4V	TGCA	6 cut(s)	102, 117, 245, 320, 490, 510
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 251, 260, 462, 487
HpyF3I	CTNAG	3 cut(s)	412, 442, 517
Hsp92II	CATG	6 cut(s)	21, 56, 272, 320, 324, 539
Kzo9I	GATC	2 cut(s)	20, 272
Lsp1109I	GCAGC	2 cut(s)	177, 493
MalI	GATC	2 cut(s)	22, 274
MboI	GATC	2 cut(s)	20, 272
MluCI	AATT	8 cut(s)	93, 119, 150, 281, 292, 382, 434, 499
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	2 cut(s)	193, 550
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	5 cut(s)	171, 251, 260, 462, 487
NdeII	GATC	2 cut(s)	20, 272
NlaIII	CATG	6 cut(s)	21, 56, 272, 320, 324, 539
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	320
PaeI	GCATGC	1 cut(s)	320
PagI	TCATGA	2 cut(s)	17, 52
PaqCI	CACCTGC	1 cut(s)	501
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	327, 528
PkrI	GCNGC	2 cut(s)	167, 483
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	516
SaqAI	TTAA	2 cut(s)	193, 550
SatI	GCNGC	2 cut(s)	166, 482
Sau3AI	GATC	2 cut(s)	20, 272
Sau96I	GGNCC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	431
SetI	ASST	9 cut(s)	52, 64, 133, 176, 235, 308, 354, 515, 562
SinI	GGWCC	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
SphI	GCATGC	1 cut(s)	320
Sse9I	AATT	8 cut(s)	93, 119, 150, 281, 292, 382, 434, 499
SsiI	CCGC	2 cut(s)	89, 163
StyD4I	CCNGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	506
TaqI	TCGA	1 cut(s)	348
TaqII	GACCGA	1 cut(s)	555
TasI	AATT	8 cut(s)	93, 119, 150, 281, 292, 382, 434, 499
TfiI	GAWTC	2 cut(s)	327, 528
Tru1I	TTAA	2 cut(s)	193, 550
Tru9I	TTAA	2 cut(s)	193, 550
TseI	GCWGC	2 cut(s)	165, 481
TspDTI	ATGAA	4 cut(s)	6, 69, 257, 325
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	4 cut(s)	119, 150, 292, 382
XceI	RCATGY	1 cut(s)	320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.