Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Forward (+)

18903710 .. 18905155

Gene Structure 1446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGGGCAAGAACTTTGAAGGAAGGCAAACATGGAAAGAGAAGGCGAAGAAGGATGTCGAGGAAGTAGAGGATGACTACTCGGAAGAAGAAGAGACCAGTGGTGGTGGCGGAGGGTTGATGCTGAGATTTGAAGAAAATGAGAGGCAGAAGAAAGCTGCTGCAGCTGGAAGAAGAGGATCTGGTGGCGGAGGTGGAGGTGGGATAGCGCAACCGTCTTGTCAAGCGGAGAGGTGTGGGGCTGATTTGGTTGATGCAAAGAGGTACAACCGCCGGCATAAGGTTTGTGAGTTTCATTCCAAGGCAGCTGTTGTGATCGTTTCCGGGATTCAACAGCGGTTTTGCCAGCAATGCAGCAGGTTCCATGAGCTAACTGAATTTGACGAAGCAAAGAGAAGCTGTCGCCGGCGTTTGGCAGGACACAATGAACGACGCCGCAAGAGCTCAGGCGAACCTTATGGAGAAGGATCCAGCCGGAGAGGGGTTGGTCACCAGTACAAAGAAAGTCAGACTGGATATCAGATCACACCTCCAGGAAACTCTTCTTCCAAGCATTGCCAGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

190

Amino Acids

21.04

Weight (kDa)

9.1

Isoelectric Point (pI)

68.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	74 - 147	2.8e-32	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	348
AciI	CCGC	6 cut(s)	111, 189, 227, 271, 337, 436
AclWI	GGATC	3 cut(s)	187, 462, 475
AcsI	RAATTY	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	433
AfaI	GTAC	2 cut(s)	266, 497
AfiI	CCNNNNNNNGG	3 cut(s)	280, 412, 481
AgsI	TTSAA	3 cut(s)	20, 134, 332
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	6 cut(s)	158, 167, 308, 370, 399, 444
AluI	AGCT	6 cut(s)	158, 167, 308, 370, 399, 444
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	3 cut(s)	187, 462, 475
ApeKI	GCWGC	5 cut(s)	158, 161, 164, 305, 354
ApoI	RAATTY	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	541
AspLEI	GCGC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	482
BamHI	GGATCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	5 cut(s)	145, 148, 176, 317, 366
BciT130I	CCWGG	1 cut(s)	534
BcnI	CCSGG	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	6 cut(s)	159, 162, 165, 306, 355, 436
BlsI	GCNGC	6 cut(s)	160, 163, 166, 307, 356, 437
Bme1390I	CCNGG	2 cut(s)	325, 534
BmiI	GGNNCC	2 cut(s)	362, 469
BmrFI	CCNGG	2 cut(s)	325, 534
BmsI	GCATC	2 cut(s)	111, 244
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	445
BpuMI	CCSGG	1 cut(s)	325
BsaHI	GRCGYC	1 cut(s)	433
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 412, 481
Bse118I	RCCGGY	2 cut(s)	273, 405
Bse1I	ACTGG	3 cut(s)	99, 493, 517
Bse3DI	GCAATG	2 cut(s)	356, 553
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	61, 79
BseLI	CCNNNNNNNGG	3 cut(s)	280, 412, 481
BseMI	GCAATG	2 cut(s)	356, 553
BseMII	CTCAG	2 cut(s)	116, 459
BseNI	ACTGG	3 cut(s)	99, 493, 517
BseXI	GCAGC	5 cut(s)	145, 148, 176, 317, 366
BsiHKAI	GWGCWC	1 cut(s)	446
BsiSI	CCGG	4 cut(s)	274, 324, 406, 475
BslI	CCNNNNNNNGG	3 cut(s)	280, 412, 481
BsmAI	GTCTC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	5 cut(s)	179, 315, 467, 522, 561
BspACI	CCGC	6 cut(s)	111, 189, 227, 271, 337, 436
BspCNI	CTCAG	2 cut(s)	117, 458
BspLI	GGNNCC	2 cut(s)	362, 469
BspMAI	CTGCAG	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	348
BspPI	GGATC	3 cut(s)	187, 462, 475
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	356, 553
BsrFI	RCCGGY	2 cut(s)	273, 405
BsrI	ACTGG	3 cut(s)	99, 493, 517
BssAI	RCCGGY	2 cut(s)	273, 405
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	5 cut(s)	179, 315, 467, 522, 561
BssNI	GRCGYC	1 cut(s)	433
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	3 cut(s)	87, 169, 547
BstACI	GRCGYC	1 cut(s)	433
BstC8I	GCNNGC	3 cut(s)	275, 347, 407
BstDEI	CTNAG	2 cut(s)	125, 445
BstEII	GGTNACC	1 cut(s)	488
BstF5I	GGATG	2 cut(s)	61, 79
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	5 cut(s)	182, 318, 470, 525, 564
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	5 cut(s)	179, 315, 467, 522, 561
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 351, 441
BstNI	CCWGG	1 cut(s)	534
BstPI	GGTNACC	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	323, 532
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	5 cut(s)	145, 148, 176, 317, 366
BstX2I	RGATCY	2 cut(s)	179, 467
BstYI	RGATCY	2 cut(s)	179, 467
BtsCI	GGATG	2 cut(s)	61, 79
BtsIMutI	CAGTG	1 cut(s)	106
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	3 cut(s)	275, 347, 407
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	2 cut(s)	273, 405
CseI	GACGC	1 cut(s)	441
Csp6I	GTAC	2 cut(s)	265, 496
CviAII	CATG	2 cut(s)	33, 365
CviJI	RGCY	8 cut(s)	158, 167, 242, 308, 370, 399, 444, 474
CviKI_1	RGCY	8 cut(s)	158, 167, 242, 308, 370, 399, 444, 474
CviQI	GTAC	2 cut(s)	265, 496
DdeI	CTNAG	2 cut(s)	125, 445
DpnI	GATC	5 cut(s)	181, 317, 469, 524, 563
DpnII	GATC	5 cut(s)	179, 315, 467, 522, 561
Eam1104I	CTCTTC	3 cut(s)	87, 169, 547
EarI	CTCTTC	3 cut(s)	87, 169, 547
EciI	GGCGGA	2 cut(s)	126, 204
Ecl136II	GAGCTC	1 cut(s)	444
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	446
Eco31I	GGTCTC	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	444
Eco91I	GGTNACC	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	444
EcoO65I	GGTNACC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	532
EcoRV	GATATC	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	36, 368
FaiI	YATR	4 cut(s)	34, 279, 366, 459
FatI	CATG	2 cut(s)	32, 364
Fnu4HI	GCNGC	6 cut(s)	159, 162, 165, 306, 355, 436
FokI	GGATG	2 cut(s)	68, 86
FriOI	GRGCYC	1 cut(s)	446
Fsp4HI	GCNGC	6 cut(s)	159, 162, 165, 306, 355, 436
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	6 cut(s)	159, 162, 165, 306, 355, 436
GsuI	CTGGAG	1 cut(s)	516
HapII	CCGG	4 cut(s)	274, 324, 406, 475
HgaI	GACGC	1 cut(s)	441
HhaI	GCGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	433
Hin1II	CATG	2 cut(s)	36, 368
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	4 cut(s)	274, 324, 406, 475
HphI	GGTGA	1 cut(s)	482
Hpy188I	TCNGA	4 cut(s)	85, 510, 522, 566
Hpy99I	CGWCG	1 cut(s)	435
HpyAV	CCTTC	5 cut(s)	14, 18, 37, 46, 458
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	164, 257, 354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 351, 441
HpyF3I	CTNAG	2 cut(s)	125, 445
Hsp92I	GRCGYC	1 cut(s)	433
Hsp92II	CATG	2 cut(s)	36, 368
HspAI	GCGC	1 cut(s)	209
KroI	GCCGGC	2 cut(s)	273, 405
KroNI	GCCGGC	2 cut(s)	275, 407
Kzo9I	GATC	5 cut(s)	179, 315, 467, 522, 561
Lsp1109I	GCAGC	5 cut(s)	145, 148, 176, 317, 366
LweI	GCATC	2 cut(s)	111, 244
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	5 cut(s)	181, 317, 469, 524, 563
MboI	GATC	5 cut(s)	179, 315, 467, 522, 561
MflI	RGATCY	2 cut(s)	179, 467
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	1 cut(s)	377
MreI	CGCCGGCG	1 cut(s)	405
MroNI	GCCGGC	2 cut(s)	273, 405
MroXI	GAANNNNTTC	1 cut(s)	541
MspA1I	CMGCKG	3 cut(s)	167, 308, 337
MspI	CCGG	4 cut(s)	274, 324, 406, 475
MspR9I	CCNGG	2 cut(s)	325, 534
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	3 cut(s)	164, 351, 441
NaeI	GCCGGC	2 cut(s)	275, 407
NciI	CCSGG	1 cut(s)	325
NdeII	GATC	5 cut(s)	179, 315, 467, 522, 561
NgoMIV	GCCGGC	2 cut(s)	273, 405
NlaIII	CATG	2 cut(s)	36, 368
NlaIV	GGNNCC	2 cut(s)	362, 469
NmuCI	GTSAC	1 cut(s)	488
PdiI	GCCGGC	2 cut(s)	275, 407
PdmI	GAANNNNTTC	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	328
PfoI	TCCNGGA	2 cut(s)	323, 532
PkrI	GCNGC	6 cut(s)	160, 163, 166, 307, 356, 437
Psp124BI	GAGCTC	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	532
PspEI	GGTNACC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	2 cut(s)	362, 469
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	179, 467
PvuII	CAGCTG	2 cut(s)	167, 308
RsaI	GTAC	2 cut(s)	266, 497
RsaNI	GTAC	2 cut(s)	265, 496
SacI	GAGCTC	1 cut(s)	446
SatI	GCNGC	6 cut(s)	159, 162, 165, 306, 355, 436
Sau3AI	GATC	5 cut(s)	179, 315, 467, 522, 561
ScrFI	CCNGG	2 cut(s)	325, 534
SduI	GDGCHC	1 cut(s)	446
SfaNI	GCATC	2 cut(s)	111, 244
SfcI	CTRYAG	1 cut(s)	162
SgrAI	CRCCGGYG	1 cut(s)	405
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	6 cut(s)	111, 189, 227, 271, 337, 436
SstI	GAGCTC	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	323, 532
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	377
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	1 cut(s)	328
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	5 cut(s)	158, 161, 164, 305, 354
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	2 cut(s)	284, 441
TspRI	CASTG	1 cut(s)	106
XapI	RAATTY	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.