pycom05g03600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0006934
Physical Location & Seq
Forward (+)
4156516 .. 4158868
2353 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
ATGTCGTTGCCCTCCTCCTGCTCGGACAAGCCAGTATGCAGTGGATCACGACCAAACAAGCGTGCACTTCTTTGCGGGGTGACATACAAGCAACATAAATACAAGCTCAAAGGCATTTATAATGATGTGAAAAACATGGAAAACTTGCTGACTAAAACCTTCGGTTTTCCTGCCAACTGCATACGCATACTTTCAGCAAGATCGAACCCGCGTGACCTAGAGCGGATTCCTACAAAGAAAAATATAGAAAATTCCTTGAAATGGCTTGTGGAGGGATGCCAGCGGGGAGACTCGTTGGTGTTTTACTTCTCGGGGCATGGCTTACGACAGCCTGATTTCAAAGATGATGAGCTTGATGGGTTCGACGAGACCATTTGCCCTGTTGATTTTATGGAAGAGGGAATGATCCTTGACAATGATATTAATGAAACCATTGTTTGGCCACTCGAGGAGGGTGTCACACTTCACGCTATCGTTGATGCTTGTCACAGTGGAACGAATGTTGATCTGGAGCACGTGTATGACCGTAAACTGAATACTTGGAAGGATAATATTCCTCTATCTCGTGCTAGAAAAAGTACAAGGGGTGGGTTAGCGATTTCTCTTAGTGCTTGCGAAGATGATAAAATGGCAATTGATACTACTGAACAAGACCGACATAACATATGGAGTTTTGCTCGACGAGATGGTAAATTACATTAA

Protein Analysis

234

Amino Acids

26.45

Weight (kDa)

6.17

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 20 - 216 6.6e-25 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AccB7I CCANNNNNTGG 1 cut(s) 438
AccBSI CCGCTC 1 cut(s) 223
AccII CGCG 1 cut(s) 211
AciI CCGC 4 cut(s) 75, 209, 223, 283
AclWI GGATC 2 cut(s) 52, 400
AcoI YGGCCR 1 cut(s) 440
AcsI RAATTY 1 cut(s) 250
AcvI CACGTG 1 cut(s) 517
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 2 cut(s) 261, 438
AflIII ACRYGT 1 cut(s) 516
AgsI TTSAA 2 cut(s) 259, 340
AluBI AGCT 2 cut(s) 106, 352
AluI AGCT 2 cut(s) 106, 352
Alw21I GWGCWC 2 cut(s) 67, 516
Alw26I GTCTC 2 cut(s) 282, 362
Alw44I GTGCAC 1 cut(s) 63
AlwI GGATC 2 cut(s) 52, 400
Ama87I CYCGRG 2 cut(s) 310, 446
AoxI GGCC 1 cut(s) 440
ApaLI GTGCAC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 250
AseI ATTAAT 1 cut(s) 423
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 2 cut(s) 310, 446
BaeGI GKGCMC 1 cut(s) 67
BalI TGGCCA 1 cut(s) 442
BauI CACGAG 1 cut(s) 564
BbrPI CACGTG 1 cut(s) 517
Bbv12I GWGCWC 2 cut(s) 67, 516
BccI CCATC 2 cut(s) 350, 680
BcoDI GTCTC 2 cut(s) 282, 362
BfaI CTAG 2 cut(s) 218, 570
BmeT110I CYCGRG 2 cut(s) 310, 446
BmsI GCATC 2 cut(s) 266, 469
BplI GAGNNNNNCTC 2 cut(s) 661, 693
BpmI CTGGAG 1 cut(s) 530
BsaAI YACGTR 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 362
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 438
Bse1I ACTGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 281
BseLI CCNNNNNNNGG 2 cut(s) 261, 438
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 2 cut(s) 4, 464
BseSI GKGCMC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 1 cut(s) 442
BsiHKAI GWGCWC 2 cut(s) 67, 516
BsiHKCI CYCGRG 2 cut(s) 310, 446
BslI CCNNNNNNNGG 2 cut(s) 261, 438
BsmAI GTCTC 2 cut(s) 282, 362
BsnI GGCC 1 cut(s) 442
Bso31I GGTCTC 1 cut(s) 362
BsoBI CYCGRG 2 cut(s) 310, 446
Bsp1286I GDGCHC 2 cut(s) 67, 516
Bsp143I GATC 4 cut(s) 44, 200, 405, 505
BspACI CCGC 4 cut(s) 75, 209, 223, 283
BspANI GGCC 1 cut(s) 442
BspFNI CGCG 1 cut(s) 211
BspPI GGATC 2 cut(s) 52, 400
BspTNI GGTCTC 1 cut(s) 362
BsrBI CCGCTC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 32
BssMI GATC 4 cut(s) 44, 200, 405, 505
BssSI CACGAG 1 cut(s) 564
Bst2BI CACGAG 1 cut(s) 564
Bst4CI ACNGT 2 cut(s) 491, 527
Bst6I CTCTTC 1 cut(s) 390
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 3 cut(s) 63, 281, 613
BstDEI CTNAG 1 cut(s) 605
BstF5I GGATG 1 cut(s) 281
BstFNI CGCG 1 cut(s) 211
BstKTI GATC 4 cut(s) 47, 203, 408, 508
BstMAI GTCTC 2 cut(s) 282, 362
BstMBI GATC 4 cut(s) 44, 200, 405, 505
BstSLI GKGCMC 1 cut(s) 67
BstUI CGCG 1 cut(s) 211
BsuRI GGCC 1 cut(s) 442
BtsCI GGATG 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 2 cut(s) 46, 496
Cac8I GCNNGC 3 cut(s) 63, 281, 613
Csp6I GTAC 1 cut(s) 579
CviAII CATG 2 cut(s) 136, 317
CviJI RGCY 7 cut(s) 31, 106, 265, 321, 331, 352, 442
CviKI_1 RGCY 7 cut(s) 31, 106, 265, 321, 331, 352, 442
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 1 cut(s) 605
DpnI GATC 4 cut(s) 46, 202, 407, 507
DpnII GATC 4 cut(s) 44, 200, 405, 505
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 362
Eco72I CACGTG 1 cut(s) 517
Eco88I CYCGRG 2 cut(s) 310, 446
FaeI CATG 2 cut(s) 139, 320
FatI CATG 2 cut(s) 135, 316
FauI CCCGC 3 cut(s) 68, 216, 276
FauNDI CATATG 1 cut(s) 665
FokI GGATG 1 cut(s) 288
FspBI CTAG 2 cut(s) 218, 570
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 1 cut(s) 442
Hin1II CATG 2 cut(s) 139, 320
HinfI GANTC 2 cut(s) 226, 290
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 65, 530
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 48, 509
Hpy8I GTNNAC 2 cut(s) 65, 530
Hpy99I CGWCG 2 cut(s) 368, 684
HpyAV CCTTC 2 cut(s) 169, 538
HpyCH4III ACNGT 2 cut(s) 491, 527
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 3 cut(s) 39, 65, 180
HpyF3I CTNAG 1 cut(s) 605
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 2 cut(s) 139, 320
Kzo9I GATC 4 cut(s) 44, 200, 405, 505
LmnI GCTCC 1 cut(s) 511
LpnPI CCDG 7 cut(s) 31, 45, 183, 293, 345, 393, 494
LweI GCATC 2 cut(s) 266, 469
MaeI CTAG 2 cut(s) 218, 570
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 4 cut(s) 79, 212, 457, 485
MalI GATC 4 cut(s) 46, 202, 407, 507
MbiI CCGCTC 1 cut(s) 223
MboI GATC 4 cut(s) 44, 200, 405, 505
MboII GAAGA 2 cut(s) 407, 629
MfeI CAATTG 1 cut(s) 633
MhlI GDGCHC 2 cut(s) 67, 516
MlsI TGGCCA 1 cut(s) 442
MluCI AATT 3 cut(s) 250, 633, 692
MluNI TGGCCA 1 cut(s) 442
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 7 cut(s) 22, 25, 265, 391, 442, 445, 567
Mox20I TGGCCA 1 cut(s) 442
MscI TGGCCA 1 cut(s) 442
MseI TTAA 2 cut(s) 423, 700
MslI CAYNNNNRTG 1 cut(s) 519
Msp20I TGGCCA 1 cut(s) 442
MspA1I CMGCKG 1 cut(s) 283
MunI CAATTG 1 cut(s) 633
MvnI CGCG 1 cut(s) 211
NdeI CATATG 1 cut(s) 665
NdeII GATC 4 cut(s) 44, 200, 405, 505
NlaIII CATG 2 cut(s) 139, 320
NmuCI GTSAC 4 cut(s) 79, 212, 457, 485
PaeR7I CTCGAG 1 cut(s) 446
PfeI GAWTC 1 cut(s) 226
PflMI CCANNNNNTGG 1 cut(s) 438
PleI GAGTC 1 cut(s) 284
PmaCI CACGTG 1 cut(s) 517
PmlI CACGTG 1 cut(s) 517
PpsI GAGTC 1 cut(s) 284
Ppu21I YACGTR 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 423
PsiI TTATAA 1 cut(s) 120
PspCI CACGTG 1 cut(s) 517
PspXI VCTCGAGB 1 cut(s) 446
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
RseI CAYNNNNRTG 1 cut(s) 519
SaqAI TTAA 2 cut(s) 423, 700
Sau3AI GATC 4 cut(s) 44, 200, 405, 505
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 2 cut(s) 67, 516
SetI ASST 5 cut(s) 108, 161, 219, 354, 519
SfaNI GCATC 2 cut(s) 266, 469
Sfr274I CTCGAG 1 cut(s) 446
SlaI CTCGAG 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 3 cut(s) 250, 633, 692
SsiI CCGC 4 cut(s) 75, 209, 223, 283
SspI AATATT 1 cut(s) 553
SspMI CTAG 2 cut(s) 218, 570
TaaI ACNGT 2 cut(s) 491, 527
TaiI ACGT 1 cut(s) 519
TaqI TCGA 4 cut(s) 203, 363, 447, 679
TaqII GACCGA 1 cut(s) 669
TasI AATT 3 cut(s) 250, 633, 692
TatI WGTACW 1 cut(s) 578
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 2 cut(s) 423, 700
Tru9I TTAA 2 cut(s) 423, 700
TscAI CASTG 2 cut(s) 46, 496
TseFI GTSAC 4 cut(s) 79, 212, 457, 485
Tsp45I GTSAC 4 cut(s) 79, 212, 457, 485
TspDTI ATGAA 1 cut(s) 441
TspRI CASTG 2 cut(s) 46, 496
Van91I CCANNNNNTGG 1 cut(s) 438
VneI GTGCAC 1 cut(s) 63
VspI ATTAAT 1 cut(s) 423
XapI RAATTY 1 cut(s) 250
XhoI CTCGAG 1 cut(s) 446
XspI CTAG 2 cut(s) 218, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.