Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003360

Physical Location & Seq

Genomic Coordinates Forward (+)

15117431 .. 15122653

Gene Structure 5223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3270 bp

ATGCTAGCCGAACTAAGCAAAGGGGATGGTGTATCCACTTTTGAGTTCATTGGTAGTGGTGTTGTTGCAGCGTTGCTTAACTATTTTTCTTGTGGGTACTTTTCCAAGGAGAGGATTTCGGAAGCTAATTTGCCCAAGCTTCGTGAGCAAGCCCTTAAAAGATTTAAGTCATTTGTTGCTGTTGCTCTTCCTTTGAGTATTGATGAAGGAAGTGTAGCACTGATGACTGTCCTTGTTCAGAAGCTCCAAAATGCTTTGTCCTCCTTAGAGCGTTTTCCTGTCGTGCTGAGTCATTCGTCTAGGTCATCCACTGGGAGTGCACGCCTCTCCTCTGGACTTAGTGCATTATCTCAGCCCTTTAAGTTGCGTCTTTGTCGTGCACAAGGAGAAAAGACCCTCCGAGACTATTCATCGAACGTCGTTCTGATTGATCCATTAGCAAGTTTAGCTGCTGTAGAAGAGTTTCTTTGGCCTCGAGTTCAACGAGGTGAATCTGGTCAGAAGCCTGCTGCATCTGCTGGAAATTCGGAATCTGGAACTACACCTACAGGTGCTGGTGCTTCATCTCTGCCTACTTCAAATCCTGCTTCCACCACTCGTCGCCACTCAACGCGGTCGAGAACATCTGTGAATATAGGAGATACAGGTAGGAGGGAACCATCACAAGAGAAGAACACAAGCTCATCAAAAGGGAAGGGTAAAGCTGTTTTGAAGCCTTCTCAGGAGGAAGCAAGAGGAACTCAAACGAGAAATGCAGCTCGTAGACGAGCAGCTCTTGATAAAGATGTTCAAATGAAGCCTGCAAATGGGGACACTACTTCTGAGGATGAGGAATTGGATATATCGCCTGTTGAGATGGATGAATTGGTCATTGAAGATGATGATATCTCAGATGACGAAGATGATGACCATGATGTTCTAAGAGATGACTCTCTTCCTGTTTGCATGCCGGATAAAGTACATGATGTGAAATTGGGAGACTCAACTGAGGATGCTACTGTAGCTTCCGCCACGAGTGACACCCACACTATCCCAGCTCCTGGCTCTAGCAGCAGAGCTGCTACAGTTAGAGGCTCAGATTCTGCTGATCATAGGAGTAGTAATTCTTATGGTTCAAGGGGTGCAATGTCATTTGCTGCTGCTGCCATGGCTGGGCTTGGATCTGCCAGTAGGGGCATCAGGGGAGGCAGAGATAGACAAGGACATCCCATTTTTGGCAGTTCTAGTGATCCTCCTAAGTTGATTTTTACTTCTGGAGGGAAGCAGCTTAATAGGCATCTGACTATCTATCAGGCTATTCAGAGACAGCTTGTGCAAGATGAGGATGATGATGAAAGGTATGCTGGCAGTGATTTCGTATCCAGTGATGGTAGCAGGCTGTGGAGTGATATTTACACTATCACATACCAGAGGCCAGACAATCAAGCTGACAGGGCATCTGTTGGAGGTGCAAGTTCTATGACTGCAACAAAATCTGGCAAATCTGGATCTGCTTCCAATTCCAACTCCGACTCCCAATTGCTTCAAATGTCACTTTTGGATAGCATTTTGCAGGGAGAGCTTCCTTGTGATTTAGAAAAATCTAATCCTACTTACAATATTGTGGCACTACTCCGTGTACTAGAGGGCTTGAATCAGCTTGCACCTCGCCTAAGAGTTCAGATAGTTTCCGACAGTTTTGCTGAGGGTAAAGTTTTGAATATGGATGACTTGAGTACAACTGGTGCCAAGGTTTTTCCGGAAGAATTTGTTAACAGCAAACTCACTCCCAAATTAGCCCGACAAATTCAAGATGCCCTTGCATTGTGCAGTGGGAGTCTTCCTTCTTGGTGTTACCAGTTGACAAAAGCATGTCCATTTTTGTTTCCTTTTGAGACTCGGAGACAGTATTTCTATTCAACGGCTTTTGGATTGTCCCGCGCTTTGCACCGTCTTCAGCAGCAGCAGGGTGCTGATGGTCATGGTGCAAATGAACGAGAGGTGAGAGTTGGGAGATTGCAACGACAGAAAGTTCGTGTGTCCCGAAACCGGATTTTGGATTCTGCTGCAAAAGTAATGGAGATGTATTCCAGCCAAAAATCTGTGCTTGAAGTAGAATATTTCGGTGAACTGGGCACTGGCTTGGGTCCTACACTTGAGTTTTACACGCTTTTAAGTCATGACCTACAAAGAGTTAGACTGGGCATGTGGAGATCGAATTCTTCCATGGAGAAAACATCAATGGATATTGATGGAGATGAACATAAAGATGGAACAAGCAATGGTGACATTGTCCAAGCTCCTCTTGGGTTGTTCCCACGTCCCTGGCCTCCAACTGCTGTTGCTTCTGATGGTAGCCAATTTTCAAAGGTCATAGAATACTTTAGGTTGGTTGGGCGTGTGATGGCTAAGGCTCTTCAAGATGGGCGGCTATTGGACTTGCCACTATCAGCCGCATTTTATAAGCTTTTGCTTGGTCAAGAGCTTGATTTACATGATGTTCTTTCCTTTGATGCTGAGCTTGGAAAGACTCTGCAGGAATTACATAACCTTGTCTGCCTGAAACTGTATTTAGAATCAAATGGTGATAATTGTGATGCCATTGCTGAATTGCGTTTCCGTGGAGCATCAGTTGATGACCTCTGTTTAGATTTTACACTTCCTGGCTATCCAGATTATGTGTTGAAACTGGGAGATGAAAATGTTGATATCAATAACTTGGAGGAGTATATATCTTTTGTTGTTGACGCGACAGTGAAGACTGGGATAATGAGGCAAATTGAAGCATTTAGAGTCGGGTTTAATCAGGTCTTTGACATATCGTCTTTACAAATATTTACTCCACATGAGTTGGACTATCTGCTTTGTGGCCGTAGAGAGTTGTGGGAGGCAGATACCCTTGCTGATCATATAAAGATTGATCATGGATACAATGCCAAGAGCCCTGCAATACTTAATTTGCTTGAGATTATGGGTGAGTTCACCCCAGAGCAGCAGCGCGCTTTCTGCCAGTTTGTTACTGGTGCACCTCGGCTTCCACCTGGTGGTTTGGCGGTGCTGAATCCAAAACTGACCATTGTGAGAAAGCATTCTTCGACTGCAAATAATGCTGCAATCAACGGGACCGGGGTTTCAGAGTTGGCAGATGATGACCTGCCAAGTGTCATGACATGCGCTAATTACCTGAAGCTTCCTCCATATTCAACCAAGGTATTACCATATTCGGAAATTATGTTCAAGAAACTATTGTATGCAATCAGTGAAGGGCAAGGATCCATTGATTTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

1090

Amino Acids

118.73

Weight (kDa)

5.39

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HECT	PF00632	718 - 1084	4.6e-72	HECT-domain (ubiquitin-transferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38600 AT4G38600 AT4G38600
fragaria_vesca	FvH4_2g01290
malus_domestica	MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1
prunus_persica	Prupe.8G164700_v2.0.a1
pyrus_communis	pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620
rosa_chinensis	RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001
rosa_laevigata	RLG00000015410 RLG00000015417
rosa_multiflora	Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016
rosa_roxburghii	Rroxscaffold_7G00216270
rosa_rugosa	Rorug05G0505300.1
rosa_samantha	Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700
rosa_wichuraiana	Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2442
Acc36I	ACCTGC	1 cut(s)	3141
AccB1I	GGYRCC	1 cut(s)	1724
AccB7I	CCANNNNNTGG	2 cut(s)	1040, 3023
AccI	GTMKAC	1 cut(s)	763
AccII	CGCG	4 cut(s)	613, 1920, 2729, 2979
AccIII	TCCGGA	1 cut(s)	1738
AciI	CCGC	6 cut(s)	613, 1008, 1918, 2407, 2433, 3032
AclWI	GGATC	6 cut(s)	425, 1168, 1223, 1495, 3246, 3259
AcoI	YGGCCR	1 cut(s)	2848
AcsI	RAATTY	4 cut(s)	523, 1745, 1785, 2197
AcuI	CTGAAG	2 cut(s)	1919, 3185
AdeI	CACNNNGTG	1 cut(s)	3023
AfaI	GTAC	4 cut(s)	98, 960, 1620, 1717
AfiI	CCNNNNNNNGG	8 cut(s)	111, 806, 1040, 1152, 1214, 2028, 2035, 3023
AhdI	GACNNNNNGTC	1 cut(s)	2800
AjiI	CACGTC	1 cut(s)	2300
AjnI	CCWGG	4 cut(s)	1039, 2303, 2641, 3019
AloI	GAACNNNNNNTCC	2 cut(s)	3197, 3229
Alw21I	GWGCWC	3 cut(s)	322, 382, 3007
Alw26I	GTCTC	5 cut(s)	396, 972, 1297, 1868, 1876
Alw44I	GTGCAC	3 cut(s)	318, 378, 3003
AlwI	GGATC	6 cut(s)	425, 1168, 1223, 1495, 3246, 3259
AlwNI	CAGNNNCTG	3 cut(s)	554, 1040, 1082
Ama87I	CYCGRG	1 cut(s)	474
Aor13HI	TCCGGA	1 cut(s)	1738
AoxI	GGCC	4 cut(s)	470, 1412, 2306, 2848
ApaLI	GTGCAC	3 cut(s)	318, 378, 3003
ApoI	RAATTY	4 cut(s)	523, 1745, 1785, 2197
ArsI	GACNNNNNNTTYG	2 cut(s)	1995, 2027
Asp700I	GAANNNNTTC	2 cut(s)	462, 3067
AspLEI	GCGC	4 cut(s)	1922, 2979, 2981, 3155
AspS9I	GGNCC	2 cut(s)	2126, 3102
AsuC2I	CCSGG	1 cut(s)	3106
AsuHPI	GGTGA	7 cut(s)	500, 1993, 2117, 2276, 2576, 2953, 2966
AsuNHI	GCTAGC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	474
AvaII	GGWCC	2 cut(s)	2126, 3102
BaeGI	GKGCMC	4 cut(s)	322, 382, 2117, 3007
BamHI	GGATCC	1 cut(s)	3251
BanI	GGYRCC	1 cut(s)	1724
BanII	GRGCYC	1 cut(s)	2924
BauI	CACGAG	1 cut(s)	1012
BbsI	GAAGAC	3 cut(s)	1811, 1925, 2744
Bbv12I	GWGCWC	3 cut(s)	322, 382, 3007
BbvCI	CCTCAGC	1 cut(s)	1683
BceAI	ACGGC	2 cut(s)	1917, 2835
BcgI	CGANNNNNNTGC	4 cut(s)	1336, 1370, 1661, 1695
BciT130I	CCWGG	4 cut(s)	1041, 2305, 2643, 3021
BciVI	GTATCC	3 cut(s)	43, 1369, 2900
BclI	TGATCA	3 cut(s)	1087, 2884, 2899
BcnI	CCSGG	1 cut(s)	3106
BcoDI	GTCTC	5 cut(s)	396, 972, 1297, 1868, 1876
BfaI	CTAG	5 cut(s)	5, 300, 1047, 1224, 1622
BfmI	CTRYAG	5 cut(s)	453, 546, 999, 1062, 2513
BfuAI	ACCTGC	1 cut(s)	3141
BfuI	GTATCC	3 cut(s)	43, 1369, 2900
BlpI	GCTNAGC	1 cut(s)	2496
Bme1390I	CCNGG	5 cut(s)	1041, 2305, 2643, 3021, 3106
Bme18I	GGWCC	2 cut(s)	2126, 3102
BmeRI	GACNNNNNGTC	1 cut(s)	2800
BmeT110I	CYCGRG	1 cut(s)	474
BmgBI	CACGTC	1 cut(s)	2300
BmgT120I	GGNCC	2 cut(s)	2126, 3102
BmiI	GGNNCC	5 cut(s)	657, 1726, 2127, 3103, 3253
BmrFI	CCNGG	5 cut(s)	1041, 2305, 2643, 3021, 3106
BmrI	ACTGGG	5 cut(s)	321, 2120, 2189, 2678, 2751
BmsI	GCATC	9 cut(s)	521, 982, 1185, 1285, 1445, 1783, 2482, 2566, 2615
BmtI	GCTAGC	1 cut(s)	8
BmuI	ACTGGG	5 cut(s)	321, 2120, 2189, 2678, 2751
BpiI	GAAGAC	3 cut(s)	1811, 1925, 2744
BpmI	CTGGAG	1 cut(s)	1275
Bpu10I	CCTNAGC	2 cut(s)	1683, 2388
Bpu1102I	GCTNAGC	1 cut(s)	2496
BpuEI	CTTGAG	3 cut(s)	1732, 2156, 2963
BpuMI	CCSGG	1 cut(s)	3106
BsaJI	CCNNGG	9 cut(s)	105, 1146, 1728, 2205, 2303, 2599, 3008, 3105, 3186
BsaWI	WCCGGW	2 cut(s)	1738, 2028
BsaXI	ACNNNNNCTCC	4 cut(s)	1496, 1526, 2595, 2625
Bsc4I	CCNNNNNNNGG	8 cut(s)	111, 806, 1040, 1152, 1214, 2028, 2035, 3023
Bse3DI	GCAATG	3 cut(s)	1131, 2266, 2580
BseAI	TCCGGA	1 cut(s)	1738
BseBI	CCWGG	4 cut(s)	1041, 2305, 2643, 3021
BseDI	CCNNGG	9 cut(s)	105, 1146, 1728, 2205, 2303, 2599, 3008, 3105, 3186
BseGI	GGATG	8 cut(s)	31, 305, 832, 865, 997, 1204, 1330, 1711
BseLI	CCNNNNNNNGG	8 cut(s)	111, 806, 1040, 1152, 1214, 2028, 2035, 3023
BseMI	GCAATG	3 cut(s)	1131, 2266, 2580
BseMII	CTCAG	9 cut(s)	278, 365, 734, 813, 903, 978, 1089, 1674, 2487
BsePI	GCGCGC	1 cut(s)	2977
BseRI	GAGGAG	3 cut(s)	319, 2271, 2717
BseSI	GKGCMC	4 cut(s)	322, 382, 2117, 3007
BseYI	CCCAGC	2 cut(s)	1033, 1151
BsgI	GTGCAG	1 cut(s)	1828
Bsh1236I	CGCG	4 cut(s)	613, 1920, 2729, 2979
Bsh1285I	CGRYCG	1 cut(s)	617
BshFI	GGCC	4 cut(s)	472, 1414, 2308, 2850
BshNI	GGYRCC	1 cut(s)	1724
BsiEI	CGRYCG	1 cut(s)	617
BsiHKAI	GWGCWC	3 cut(s)	322, 382, 3007
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	4 cut(s)	950, 1739, 2029, 3105
BslFI	GGGAC	5 cut(s)	824, 1900, 2005, 2286, 3115
BslI	CCNNNNNNNGG	8 cut(s)	111, 806, 1040, 1152, 1214, 2028, 2035, 3023
BsmAI	GTCTC	5 cut(s)	396, 972, 1297, 1868, 1876
BsmFI	GGGAC	5 cut(s)	824, 1900, 2005, 2286, 3115
BsmI	GAATGC	1 cut(s)	3067
BsnI	GGCC	4 cut(s)	472, 1414, 2308, 2850
BsoBI	CYCGRG	1 cut(s)	474
Bsp1286I	GDGCHC	5 cut(s)	322, 382, 2117, 2924, 3007
Bsp13I	TCCGGA	1 cut(s)	1738
Bsp143I	GATC	9 cut(s)	430, 1087, 1160, 1228, 1487, 2192, 2884, 2899, 3251
Bsp1720I	GCTNAGC	1 cut(s)	2496
Bsp19I	CCATGG	2 cut(s)	1146, 2205
BspACI	CCGC	6 cut(s)	613, 1008, 1918, 2407, 2433, 3032
BspANI	GGCC	4 cut(s)	472, 1414, 2308, 2850
BspCNI	CTCAG	9 cut(s)	279, 364, 733, 814, 902, 979, 1088, 1675, 2488
BspEI	TCCGGA	1 cut(s)	1738
BspFNI	CGCG	4 cut(s)	613, 1920, 2729, 2979
BspHI	TCATGA	3 cut(s)	2158, 3144, 3266
BspLI	GGNNCC	5 cut(s)	657, 1726, 2127, 3103, 3253
BspMAI	CTGCAG	1 cut(s)	2517
BspMI	ACCTGC	1 cut(s)	3141
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	6 cut(s)	425, 1168, 1223, 1495, 3246, 3259
BspQI	GCTCTTC	2 cut(s)	192, 2400
BspT107I	GGYRCC	1 cut(s)	1724
BsrDI	GCAATG	3 cut(s)	1131, 2266, 2580
BssECI	CCNNGG	9 cut(s)	105, 1146, 1728, 2205, 2303, 2599, 3008, 3105, 3186
BssHII	GCGCGC	1 cut(s)	2977
BssMI	GATC	9 cut(s)	430, 1087, 1160, 1228, 1487, 2192, 2884, 2899, 3251
BssSI	CACGAG	1 cut(s)	1012
BssT1I	CCWWGG	5 cut(s)	105, 1146, 1728, 2205, 3186
Bst2BI	CACGAG	1 cut(s)	1012
Bst2UI	CCWGG	4 cut(s)	1041, 2305, 2643, 3021
Bst4CI	ACNGT	8 cut(s)	229, 1000, 1066, 1676, 1887, 1931, 2547, 2734
Bst6I	CTCTTC	4 cut(s)	192, 453, 939, 2400
BstAPI	GCANNNNNTGC	1 cut(s)	3086
BstDSI	CCRYGG	3 cut(s)	1146, 2205, 2599
BstF5I	GGATG	8 cut(s)	31, 305, 832, 865, 997, 1204, 1330, 1711
BstFNI	CGCG	4 cut(s)	613, 1920, 2729, 2979
BstHHI	GCGC	4 cut(s)	1922, 2979, 2981, 3155
BstKTI	GATC	9 cut(s)	433, 1090, 1163, 1231, 1490, 2195, 2887, 2902, 3254
BstMAI	GTCTC	5 cut(s)	396, 972, 1297, 1868, 1876
BstMBI	GATC	9 cut(s)	430, 1087, 1160, 1228, 1487, 2192, 2884, 2899, 3251
BstMCI	CGRYCG	1 cut(s)	617
BstNI	CCWGG	4 cut(s)	1041, 2305, 2643, 3021
BstNSI	RCATGY	4 cut(s)	949, 1854, 2188, 3153
BstSCI	CCNGG	5 cut(s)	1039, 2303, 2641, 3019, 3104
BstSFI	CTRYAG	5 cut(s)	453, 546, 999, 1062, 2513
BstSLI	GKGCMC	4 cut(s)	322, 382, 2117, 3007
BstUI	CGCG	4 cut(s)	613, 1920, 2729, 2979
BstV2I	GAAGAC	3 cut(s)	1811, 1925, 2744
BstX2I	RGATCY	3 cut(s)	1160, 1487, 3251
BstXI	CCANNNNNNTGG	1 cut(s)	2304
BstYI	RGATCY	3 cut(s)	1160, 1487, 3251
BsuI	GTATCC	3 cut(s)	43, 1369, 2900
BsuRI	GGCC	4 cut(s)	472, 1414, 2308, 2850
BtgI	CCRYGG	3 cut(s)	1146, 2205, 2599
BtrI	CACGTC	1 cut(s)	2300
BtsCI	GGATG	8 cut(s)	31, 305, 832, 865, 997, 1204, 1330, 1711
BtsI	GCAGTG	2 cut(s)	1354, 1816
BtsIMutI	CAGTG	8 cut(s)	218, 309, 1354, 1369, 1816, 2115, 2739, 3244
BveI	ACCTGC	1 cut(s)	3141
CaiI	CAGNNNCTG	3 cut(s)	554, 1040, 1082
CciI	TCATGA	3 cut(s)	2158, 3144, 3266
CfoI	GCGC	4 cut(s)	1922, 2979, 2981, 3155
Cfr13I	GGNCC	2 cut(s)	2126, 3102
CseI	GACGC	2 cut(s)	356, 2735
CsiI	ACCWGGT	1 cut(s)	3019
Csp6I	GTAC	4 cut(s)	97, 959, 1619, 1716
CspCI	CAANNNNNGTGG	2 cut(s)	2811, 2846
CviQI	GTAC	4 cut(s)	97, 959, 1619, 1716
DpnI	GATC	9 cut(s)	432, 1089, 1162, 1230, 1489, 2194, 2886, 2901, 3253
DpnII	GATC	9 cut(s)	430, 1087, 1160, 1228, 1487, 2192, 2884, 2899, 3251
DraIII	CACNNNGTG	1 cut(s)	3023
DriI	GACNNNNNGTC	1 cut(s)	2800
EaeI	YGGCCR	1 cut(s)	2848
Eam1104I	CTCTTC	4 cut(s)	192, 453, 939, 2400
Eam1105I	GACNNNNNGTC	1 cut(s)	2800
EarI	CTCTTC	4 cut(s)	192, 453, 939, 2400
EciI	GGCGGA	1 cut(s)	997
Eco130I	CCWWGG	5 cut(s)	105, 1146, 1728, 2205, 3186
Eco24I	GRGCYC	1 cut(s)	2924
Eco32I	GATATC	2 cut(s)	886, 2689
Eco47I	GGWCC	2 cut(s)	2126, 3102
Eco57I	CTGAAG	2 cut(s)	1919, 3185
Eco88I	CYCGRG	1 cut(s)	474
EcoO109I	RGGNCCY	1 cut(s)	2126
EcoRI	GAATTC	1 cut(s)	2197
EcoRII	CCWGG	4 cut(s)	1039, 2303, 2641, 3019
EcoRV	GATATC	2 cut(s)	886, 2689
EcoT14I	CCWWGG	5 cut(s)	105, 1146, 1728, 2205, 3186
EcoT38I	GRGCYC	1 cut(s)	2924
ErhI	CCWWGG	5 cut(s)	105, 1146, 1728, 2205, 3186
FalI	AAGNNNNNCTT	6 cut(s)	450, 482, 1782, 1814, 2268, 2300
FaqI	GGGAC	5 cut(s)	824, 1900, 2005, 2286, 3115
FauI	CCCGC	1 cut(s)	1925
FbaI	TGATCA	3 cut(s)	1087, 2884, 2899
FblI	GTMKAC	1 cut(s)	763
FokI	GGATG	8 cut(s)	38, 292, 839, 872, 1004, 1191, 1337, 1718
FriOI	GRGCYC	1 cut(s)	2924
FspBI	CTAG	5 cut(s)	5, 300, 1047, 1224, 1622
GlaI	GCGC	4 cut(s)	1921, 2978, 2980, 3154
GsaI	CCCAGC	2 cut(s)	1037, 1155
GsuI	CTGGAG	1 cut(s)	1275
HaeIII	GGCC	4 cut(s)	472, 1414, 2308, 2850
HapII	CCGG	4 cut(s)	950, 1739, 2029, 3105
HgaI	GACGC	2 cut(s)	356, 2735
HhaI	GCGC	4 cut(s)	1922, 2979, 2981, 3155
Hin6I	GCGC	4 cut(s)	1920, 2977, 2979, 3153
HinP1I	GCGC	4 cut(s)	1920, 2977, 2979, 3153
HincII	GTYRAC	3 cut(s)	1753, 1842, 2725
HindII	GTYRAC	3 cut(s)	1753, 1842, 2725
HindIII	AAGCTT	3 cut(s)	137, 2444, 3167
HpaI	GTTAAC	1 cut(s)	1753
HpaII	CCGG	4 cut(s)	950, 1739, 2029, 3105
HphI	GGTGA	7 cut(s)	500, 1993, 2117, 2276, 2576, 2953, 2966
Hpy99I	CGWCG	2 cut(s)	422, 603
HpyAV	CCTTC	5 cut(s)	200, 688, 726, 1833, 3236
HpyCH4III	ACNGT	8 cut(s)	229, 1000, 1066, 1676, 1887, 1931, 2547, 2734
HpyCH4IV	ACGT	2 cut(s)	417, 2299
HpySE526I	ACGT	2 cut(s)	417, 2299
HspAI	GCGC	4 cut(s)	1920, 2977, 2979, 3153
Kpn2I	TCCGGA	1 cut(s)	1738
Ksp22I	TGATCA	3 cut(s)	1087, 2884, 2899
KspAI	GTTAAC	1 cut(s)	1753
Kzo9I	GATC	9 cut(s)	430, 1087, 1160, 1228, 1487, 2192, 2884, 2899, 3251
LguI	GCTCTTC	2 cut(s)	192, 2400
LmnI	GCTCC	4 cut(s)	249, 1042, 2284, 2603
LweI	GCATC	9 cut(s)	521, 982, 1185, 1285, 1445, 1783, 2482, 2566, 2615
MabI	ACCWGGT	1 cut(s)	3019
MaeI	CTAG	5 cut(s)	5, 300, 1047, 1224, 1622
MaeII	ACGT	2 cut(s)	417, 2299
MaeIII	GTNAC	5 cut(s)	1016, 1530, 1832, 2264, 2995
MalI	GATC	9 cut(s)	432, 1089, 1162, 1230, 1489, 2194, 2886, 2901, 3253
MboI	GATC	9 cut(s)	430, 1087, 1160, 1228, 1487, 2192, 2884, 2899, 3251
MfeI	CAATTG	1 cut(s)	1517
MflI	RGATCY	3 cut(s)	1160, 1487, 3251
MhlI	GDGCHC	5 cut(s)	322, 382, 2117, 2924, 3007
MlyI	GAGTC	8 cut(s)	298, 923, 974, 1505, 1825, 1870, 2503, 2781
MmeI	TCCRAC	6 cut(s)	1423, 1527, 1533, 1695, 2336, 2811
MroI	TCCGGA	1 cut(s)	1738
MroXI	GAANNNNTTC	2 cut(s)	462, 3067
MseI	TTAA	9 cut(s)	78, 156, 165, 360, 1269, 1752, 2153, 2781, 2934
MslI	CAYNNNNRTG	1 cut(s)	2247
MspI	CCGG	4 cut(s)	950, 1739, 2029, 3105
MspR9I	CCNGG	5 cut(s)	1041, 2305, 2643, 3021, 3106
MunI	CAATTG	1 cut(s)	1517
Mva1269I	GAATGC	1 cut(s)	3067
MvaI	CCWGG	4 cut(s)	1041, 2305, 2643, 3021
MvnI	CGCG	4 cut(s)	613, 1920, 2729, 2979
NciI	CCSGG	1 cut(s)	3106
NcoI	CCATGG	2 cut(s)	1146, 2205
NdeII	GATC	9 cut(s)	430, 1087, 1160, 1228, 1487, 2192, 2884, 2899, 3251
NheI	GCTAGC	1 cut(s)	4
NlaIV	GGNNCC	5 cut(s)	657, 1726, 2127, 3103, 3253
NmeAIII	GCCGAG	1 cut(s)	2989
NmuCI	GTSAC	3 cut(s)	1016, 1530, 2264
NspI	RCATGY	4 cut(s)	949, 1854, 2188, 3153
PaeI	GCATGC	1 cut(s)	949
PaeR7I	CTCGAG	1 cut(s)	474
PagI	TCATGA	3 cut(s)	2158, 3144, 3266
PauI	GCGCGC	1 cut(s)	2977
PciSI	GCTCTTC	2 cut(s)	192, 2400
PcsI	WCGNNNNNNNCGW	2 cut(s)	481, 2020
PctI	GAATGC	1 cut(s)	3067
PdmI	GAANNNNTTC	2 cut(s)	462, 3067
PfeI	GAWTC	7 cut(s)	491, 530, 1079, 1633, 2039, 2555, 3040
PflFI	GACNNNGTC	1 cut(s)	2270
PflMI	CCANNNNNTGG	2 cut(s)	1040, 3023
PleI	GAGTC	8 cut(s)	297, 923, 974, 1505, 1824, 1870, 2503, 2780
PpsI	GAGTC	8 cut(s)	297, 923, 974, 1505, 1824, 1870, 2503, 2780
PpuMI	RGGWCCY	1 cut(s)	2126
PsiI	TTATAA	1 cut(s)	2442
Psp5II	RGGWCCY	1 cut(s)	2126
Psp6I	CCWGG	4 cut(s)	1039, 2303, 2641, 3019
PspFI	CCCAGC	2 cut(s)	1033, 1151
PspGI	CCWGG	4 cut(s)	1039, 2303, 2641, 3019
PspN4I	GGNNCC	5 cut(s)	657, 1726, 2127, 3103, 3253
PspPI	GGNCC	2 cut(s)	2126, 3102
PspPPI	RGGWCCY	1 cut(s)	2126
PspXI	VCTCGAGB	1 cut(s)	474
PsrI	GAACNNNNNNTAC	2 cut(s)	529, 561
PstI	CTGCAG	1 cut(s)	2517
PstNI	CAGNNNCTG	3 cut(s)	554, 1040, 1082
PsuI	RGATCY	3 cut(s)	1160, 1487, 3251
PsyI	GACNNNGTC	1 cut(s)	2270
PteI	GCGCGC	1 cut(s)	2977
RsaI	GTAC	4 cut(s)	98, 960, 1620, 1717
RsaNI	GTAC	4 cut(s)	97, 959, 1619, 1716
RseI	CAYNNNNRTG	1 cut(s)	2247
SapI	GCTCTTC	2 cut(s)	192, 2400
SaqAI	TTAA	9 cut(s)	78, 156, 165, 360, 1269, 1752, 2153, 2781, 2934
Sau3AI	GATC	9 cut(s)	430, 1087, 1160, 1228, 1487, 2192, 2884, 2899, 3251
Sau96I	GGNCC	2 cut(s)	2126, 3102
SchI	GAGTC	8 cut(s)	298, 923, 974, 1505, 1825, 1870, 2503, 2781
ScrFI	CCNGG	5 cut(s)	1041, 2305, 2643, 3021, 3106
SduI	GDGCHC	5 cut(s)	322, 382, 2117, 2924, 3007
SexAI	ACCWGGT	1 cut(s)	3019
SfaNI	GCATC	9 cut(s)	521, 982, 1185, 1285, 1445, 1783, 2482, 2566, 2615
SfcI	CTRYAG	5 cut(s)	453, 546, 999, 1062, 2513
Sfr274I	CTCGAG	1 cut(s)	474
SinI	GGWCC	2 cut(s)	2126, 3102
SlaI	CTCGAG	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	2247
SmlI	CTYRAG	4 cut(s)	474, 1711, 2135, 2942
SmoI	CTYRAG	4 cut(s)	474, 1711, 2135, 2942
SphI	GCATGC	1 cut(s)	949
SsiI	CCGC	6 cut(s)	613, 1008, 1918, 2407, 2433, 3032
SspI	AATATT	3 cut(s)	1600, 2099, 2814
SspMI	CTAG	5 cut(s)	5, 300, 1047, 1224, 1622
StyD4I	CCNGG	5 cut(s)	1039, 2303, 2641, 3019, 3104
StyI	CCWWGG	5 cut(s)	105, 1146, 1728, 2205, 3186
TaaI	ACNGT	8 cut(s)	229, 1000, 1066, 1676, 1887, 1931, 2547, 2734
TaiI	ACGT	2 cut(s)	420, 2302
TaqI	TCGA	5 cut(s)	413, 475, 617, 2195, 3074
TatI	WGTACW	3 cut(s)	958, 1618, 1715
TauI	GCSGC	2 cut(s)	2410, 2435
TfiI	GAWTC	7 cut(s)	491, 530, 1079, 1633, 2039, 2555, 3040
Tru1I	TTAA	9 cut(s)	78, 156, 165, 360, 1269, 1752, 2153, 2781, 2934
Tru9I	TTAA	9 cut(s)	78, 156, 165, 360, 1269, 1752, 2153, 2781, 2934
TscAI	CASTG	8 cut(s)	225, 316, 1354, 1369, 1816, 2122, 2739, 3244
TseFI	GTSAC	3 cut(s)	1016, 1530, 2264
Tsp45I	GTSAC	3 cut(s)	1016, 1530, 2264
TspGWI	ACGGA	2 cut(s)	1604, 2588
TspRI	CASTG	8 cut(s)	225, 316, 1354, 1369, 1816, 2122, 2739, 3244
Tth111I	GACNNNGTC	1 cut(s)	2270
Van91I	CCANNNNNTGG	2 cut(s)	1040, 3023
VneI	GTGCAC	3 cut(s)	318, 378, 3003
VpaK11BI	GGWCC	2 cut(s)	2126, 3102
XapI	RAATTY	4 cut(s)	523, 1745, 1785, 2197
XceI	RCATGY	4 cut(s)	949, 1854, 2188, 3153
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2282, 2996
XhoI	CTCGAG	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	763
XmnI	GAANNNNTTC	2 cut(s)	462, 3067
XspI	CTAG	5 cut(s)	5, 300, 1047, 1224, 1622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.