pycom05g32330

Transcription initiation factor IIF subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
31771735 .. 31775499
3765 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g32330.9

Sequence Viewer

Length: 1527 bp
ATGGCTCTCAACCGCGCCAAGTGCAACGAGTGCGGCGCCGTCGTCACTCGCTTAATTCGAGAATATAATGTTCGAGCGAGTACTGTCAATGACAAGAACTACTTCATTGGGAGATTTGTGACGGGGTTGCCGAGTTTTTCGAAGACGAAGAATTCTGAAAATAAATGGTCTCTCCACAAGGATGGACTACAAGGACGTCAACTTAGTGATGCTATGCGGGAGAAGTACAAGAATAAACCCTGGGTTTTGGAGGACGAAAGTGGCCGGTCTCAGTACCAGGGTCATCTTGAAGGTGCACAGACTGCAACCTACTACTTGCTAATAAAGCATCCCTCTGGAAAGGAGTTTTCTGCCATTCCTGCTGGTTCTTGGTTCAATTTCAACAAGGTTGCACAGTACAAACAACTTACATTGGAGGAAGCCGAAGAGAAGATTAGTAATAGGAAAAAGACTGCAGATGGATATGAAAGATGGATGATGAAAGCTGCAAATAATGGAGCTGCTTTATTTGGTGAAGTGGAGAGGTTTGACAACGATAATGGTGTGGCTGGTGGGAAGGGACGAAAAAAGACAGCTGCTGGTGGTGATGATGAAGAAGGAAATGGTTCAGATAGAGGAGATGAGGATGATGAAGAAGAGTTGGAAAGGAAGAAAAGATTGAACAAAAGTGGTGGTGACGGTGATGGTGATGATGATGATGAAGGCGCAAGGGGAGGTGATGCGGACATGGATGACGATGATATCGAGAAGGGTGATGACTGGGAGCACGAAGAAATTTTCACTGATGATGATGAAGCTGTTGGCAACAATCCTGAGGAAAGGGAAGATTTGGAACCAGAGATTCCAGCTCCTCCAGAAATTAAGCAGGATGATGAGGACGAGGATGAAGATGACAAAGAGGGTGGGCTGAGCAAATCAGGAAAAGAGTTGAAGAAGCTACTTGGGCGAAGTGGTGGGCTGAATGATTCAGATGTGGAGGATGACGACGATGATGATGATGATATGGATGATGATATTGGCTTTCCTTCAGAGCTGGCTCCAAAGCAGAAGGATGCACCCAAAGAGGAACCATCTGACAACAGTCCCTCAAAACCAACACCTTCTGCGTCCAGTCGAGGAACTACATCAACCTCCAAGTCCTCAAAGGGAAAGAGAAAATCAAGTGGCGATGATGCTAAGGCATCTAACAGTGCACCTCCCAAGAAGGTCAAGACTGAAAATGAACAAAAATCCATCAAAGAGGAGCCTGTGTCTGTACCTGCTTCTAAAAGTAGTGCGCCTCCAAAAGGTACTCCGCCGGTGAAAACAGAGCCATCATCATCTGGTGGACGTGTCACCGAGGAAGAAATCAGGGCCGTGTTGATGCAGAGAACACCACTTACCACGAATGATCTTGTTTCTAGATTTAAGGGAAGACTCAAATCGTCTGAGGAAAAGGCTGCTTTTTCGAGTATTCTAAGGAGAATTTCTAAGATAAAGAAGGGCAACAACGGAACCAGCAGCTTTATAGTACTGAAAGAACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

55.79

Weight (kDa)

4.84

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 199
Acc36I ACCTGC 1 cut(s) 1267
AccB1I GGYRCC 1 cut(s) 35
AccII CGCG 1 cut(s) 15
AciI CCGC 5 cut(s) 13, 33, 217, 722, 1295
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 3 cut(s) 151, 774, 1464
AcuI CTGAAG 1 cut(s) 1011
AcyI GRCGYC 2 cut(s) 36, 196
AfaI GTAC 7 cut(s) 82, 227, 275, 398, 1257, 1291, 1512
AfiI CCNNNNNNNGG 1 cut(s) 1286
AflIII ACRYGT 1 cut(s) 1330
AgsI TTSAA 5 cut(s) 290, 376, 382, 661, 931
AjiI CACGTC 1 cut(s) 1331
AjnI CCWGG 2 cut(s) 239, 276
AluBI AGCT 8 cut(s) 485, 500, 575, 797, 848, 937, 1033, 1503
AluI AGCT 8 cut(s) 485, 500, 575, 797, 848, 937, 1033, 1503
Alw21I GWGCWC 3 cut(s) 298, 768, 1195
Alw26I GTCTC 2 cut(s) 174, 273
Alw44I GTGCAC 2 cut(s) 294, 1191
AlwNI CAGNNNCTG 1 cut(s) 578
AoxI GGCC 2 cut(s) 262, 1353
ApaLI GTGCAC 2 cut(s) 294, 1191
ApeKI GCWGC 5 cut(s) 485, 500, 575, 1439, 1500
ApoI RAATTY 3 cut(s) 151, 774, 1464
Asp700I GAANNNNTTC 2 cut(s) 101, 604
AspLEI GCGC 4 cut(s) 17, 38, 707, 1279
AspS9I GGNCC 1 cut(s) 1353
AsuHPI GGTGA 9 cut(s) 524, 596, 686, 692, 698, 728, 764, 1312, 1327
AsuII TTCGAA 1 cut(s) 140
AxyI CCTNAGG 1 cut(s) 813
BaeGI GKGCMC 2 cut(s) 298, 1195
BanI GGYRCC 1 cut(s) 35
BbsI GAAGAC 2 cut(s) 149, 1420
Bbv12I GWGCWC 3 cut(s) 298, 768, 1195
BbvI GCAGC 5 cut(s) 472, 487, 562, 1426, 1512
BccI CCATC 7 cut(s) 176, 452, 465, 677, 1078, 1241, 1321
BceAI ACGGC 2 cut(s) 23, 1340
BciT130I CCWGG 2 cut(s) 241, 278
BcoDI GTCTC 2 cut(s) 174, 273
BfaI CTAG 1 cut(s) 1401
BfmI CTRYAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 1267
BisI GCNGC 6 cut(s) 34, 486, 501, 576, 1440, 1501
BlpI GCTNAGC 1 cut(s) 908
BlsI GCNGC 6 cut(s) 35, 487, 502, 577, 1441, 1502
BmcAI AGTACT 2 cut(s) 82, 1512
Bme1390I CCNGG 2 cut(s) 241, 278
BmgBI CACGTC 1 cut(s) 1331
BmgT120I GGNCC 1 cut(s) 1353
BmiI GGNNCC 6 cut(s) 37, 834, 1038, 1068, 1245, 1495
BmrFI CCNGG 2 cut(s) 241, 278
BmrI ACTGGG 1 cut(s) 769
BmsI GCATC 7 cut(s) 199, 337, 709, 1042, 1162, 1190, 1353
BmuI ACTGGG 1 cut(s) 769
BoxI GACNNNNGTC 1 cut(s) 1080
BpiI GAAGAC 2 cut(s) 149, 1420
BpmI CTGGAG 1 cut(s) 837
Bpu10I CCTNAGC 1 cut(s) 1176
Bpu1102I GCTNAGC 1 cut(s) 908
Bpu14I TTCGAA 1 cut(s) 140
BsaHI GRCGYC 2 cut(s) 36, 196
BsaI GGTCTC 2 cut(s) 174, 273
BsaJI CCNNGG 4 cut(s) 239, 240, 277, 1338
BsaXI ACNNNNNCTCC 2 cut(s) 1235, 1265
Bsc4I CCNNNNNNNGG 1 cut(s) 1286
Bse118I RCCGGY 2 cut(s) 264, 1297
Bse1I ACTGG 2 cut(s) 764, 1110
Bse21I CCTNAGG 1 cut(s) 813
BseBI CCWGG 2 cut(s) 241, 278
BseDI CCNNGG 4 cut(s) 239, 240, 277, 1338
BseLI CCNNNNNNNGG 1 cut(s) 1286
BseMII CTCAG 4 cut(s) 284, 804, 899, 1419
BseNI ACTGG 2 cut(s) 764, 1110
BseRI GAGGAG 3 cut(s) 630, 840, 1256
BseSI GKGCMC 2 cut(s) 298, 1195
BseXI GCAGC 5 cut(s) 472, 487, 562, 1426, 1512
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 264, 1355
BshNI GGYRCC 1 cut(s) 35
BsiHKAI GWGCWC 3 cut(s) 298, 768, 1195
BsiSI CCGG 2 cut(s) 265, 1298
BslFI GGGAC 2 cut(s) 573, 1068
BslI CCNNNNNNNGG 1 cut(s) 1286
BsmAI GTCTC 2 cut(s) 174, 273
BsmFI GGGAC 2 cut(s) 573, 1068
BsnI GGCC 2 cut(s) 264, 1355
Bso31I GGTCTC 2 cut(s) 174, 273
Bsp119I TTCGAA 1 cut(s) 140
Bsp1286I GDGCHC 3 cut(s) 298, 768, 1195
Bsp143I GATC 1 cut(s) 1390
Bsp1720I GCTNAGC 1 cut(s) 908
BspACI CCGC 5 cut(s) 13, 33, 217, 722, 1295
BspANI GGCC 2 cut(s) 264, 1355
BspCNI CTCAG 4 cut(s) 283, 805, 900, 1420
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 6 cut(s) 37, 834, 1038, 1068, 1245, 1495
BspMAI CTGCAG 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 1267
BspT104I TTCGAA 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 35
BspTNI GGTCTC 2 cut(s) 174, 273
BsrFI RCCGGY 2 cut(s) 264, 1297
BsrI ACTGG 2 cut(s) 764, 1110
BssAI RCCGGY 2 cut(s) 264, 1297
BssECI CCNNGG 4 cut(s) 239, 240, 277, 1338
BssMI GATC 1 cut(s) 1390
BssNI GRCGYC 2 cut(s) 36, 196
Bst2UI CCWGG 2 cut(s) 241, 278
Bst4CI ACNGT 5 cut(s) 85, 396, 680, 1082, 1190
Bst6I CTCTTC 2 cut(s) 420, 630
BstACI GRCGYC 2 cut(s) 36, 196
BstAPI GCANNNNNTGC 2 cut(s) 30, 302
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 1035
BstDEI CTNAG 8 cut(s) 203, 270, 813, 908, 1176, 1428, 1457, 1470
BstENI CCTNNNNNAGG 1 cut(s) 1284
BstFNI CGCG 1 cut(s) 15
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 4 cut(s) 17, 38, 707, 1279
BstKTI GATC 1 cut(s) 1393
BstMAI GTCTC 2 cut(s) 174, 273
BstMBI GATC 1 cut(s) 1390
BstMWI GCNNNNNNNGC 6 cut(s) 21, 30, 302, 325, 359, 943
BstNI CCWGG 2 cut(s) 241, 278
BstPAI GACNNNNGTC 1 cut(s) 1080
BstSCI CCNGG 2 cut(s) 239, 276
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 2 cut(s) 298, 1195
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 5 cut(s) 472, 487, 562, 1426, 1512
BstV2I GAAGAC 2 cut(s) 149, 1420
BstXI CCANNNNNNTGG 1 cut(s) 182
Bsu36I CCTNAGG 1 cut(s) 813
BsuRI GGCC 2 cut(s) 264, 1355
BtgZI GCGATG 1 cut(s) 1182
BtrI CACGTC 1 cut(s) 1331
BtsIMutI CAGTG 2 cut(s) 780, 1195
BveI ACCTGC 1 cut(s) 1267
Cac8I GCNNGC 1 cut(s) 1035
CaiI CAGNNNCTG 1 cut(s) 578
CfoI GCGC 4 cut(s) 17, 38, 707, 1279
Cfr10I RCCGGY 2 cut(s) 264, 1297
Cfr13I GGNCC 1 cut(s) 1353
CseI GACGC 1 cut(s) 1095
Csp6I GTAC 7 cut(s) 81, 226, 274, 397, 1256, 1290, 1511
CspCI CAANNNNNGTGG 4 cut(s) 652, 687, 883, 918
CviAII CATG 1 cut(s) 727
CviQI GTAC 7 cut(s) 81, 226, 274, 397, 1256, 1290, 1511
DdeI CTNAG 8 cut(s) 203, 270, 813, 908, 1176, 1428, 1457, 1470
DinI GGCGCC 1 cut(s) 37
DpnI GATC 1 cut(s) 1392
DpnII GATC 1 cut(s) 1390
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 420, 630
EarI CTCTTC 2 cut(s) 420, 630
EciI GGCGGA 1 cut(s) 1284
Eco31I GGTCTC 2 cut(s) 174, 273
Eco32I GATATC 1 cut(s) 742
Eco57I CTGAAG 1 cut(s) 1011
Eco81I CCTNAGG 1 cut(s) 813
EcoNI CCTNNNNNAGG 1 cut(s) 1284
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 239, 276
EcoRV GATATC 1 cut(s) 742
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
FaeI CATG 1 cut(s) 730
FaiI YATR 6 cut(s) 66, 215, 465, 728, 1004, 1508
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FaqI GGGAC 2 cut(s) 573, 1068
FatI CATG 1 cut(s) 726
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 6 cut(s) 34, 486, 501, 576, 1440, 1501
Fsp4HI GCNGC 6 cut(s) 34, 486, 501, 576, 1440, 1501
FspBI CTAG 1 cut(s) 1401
GlaI GCGC 4 cut(s) 16, 37, 706, 1278
GluI GCNGC 6 cut(s) 34, 486, 501, 576, 1440, 1501
GsuI CTGGAG 1 cut(s) 837
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 2 cut(s) 264, 1355
HapII CCGG 2 cut(s) 265, 1298
HgaI GACGC 1 cut(s) 1095
HhaI GCGC 4 cut(s) 17, 38, 707, 1279
Hin1I GRCGYC 2 cut(s) 36, 196
Hin1II CATG 1 cut(s) 730
Hin6I GCGC 4 cut(s) 15, 36, 705, 1277
HinP1I GCGC 4 cut(s) 15, 36, 705, 1277
HincII GTYRAC 1 cut(s) 200
HindII GTYRAC 1 cut(s) 200
HinfI GANTC 3 cut(s) 841, 965, 1416
HpaII CCGG 2 cut(s) 265, 1298
HphI GGTGA 9 cut(s) 524, 596, 686, 692, 698, 728, 764, 1312, 1327
Hpy166II GTNNAC 4 cut(s) 200, 296, 1193, 1328
Hpy188I TCNGA 6 cut(s) 157, 610, 970, 1030, 1075, 1429
Hpy188III TCNNGA 9 cut(s) 59, 287, 336, 745, 812, 854, 918, 1210, 1401
Hpy8I GTNNAC 4 cut(s) 200, 296, 1193, 1328
Hpy99I CGWCG 2 cut(s) 44, 989
HpyCH4III ACNGT 5 cut(s) 85, 396, 680, 1082, 1190
HpyCH4IV ACGT 2 cut(s) 196, 1330
HpyCH4V TGCA 9 cut(s) 24, 296, 305, 392, 455, 488, 1055, 1193, 1366
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 30, 302, 325, 359, 943
HpyF3I CTNAG 8 cut(s) 203, 270, 813, 908, 1176, 1428, 1457, 1470
HpySE526I ACGT 2 cut(s) 196, 1330
Hsp92I GRCGYC 2 cut(s) 36, 196
Hsp92II CATG 1 cut(s) 730
HspAI GCGC 4 cut(s) 15, 36, 705, 1277
KasI GGCGCC 1 cut(s) 35
Kzo9I GATC 1 cut(s) 1390
LmnI GCTCC 5 cut(s) 497, 763, 853, 1042, 1243
Lsp1109I GCAGC 5 cut(s) 472, 487, 562, 1426, 1512
LweI GCATC 7 cut(s) 199, 337, 709, 1042, 1162, 1190, 1353
MaeI CTAG 1 cut(s) 1401
MaeII ACGT 2 cut(s) 196, 1330
MaeIII GTNAC 4 cut(s) 43, 118, 674, 1333
MalI GATC 1 cut(s) 1392
MboI GATC 1 cut(s) 1390
MhlI GDGCHC 3 cut(s) 298, 768, 1195
MluCI AATT 6 cut(s) 54, 151, 376, 774, 858, 1464
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 1410
MmeI TCCRAC 1 cut(s) 621
MroXI GAANNNNTTC 2 cut(s) 101, 604
MseI TTAA 3 cut(s) 53, 861, 1407
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 2 cut(s) 265, 1298
MspR9I CCNGG 2 cut(s) 241, 278
MvaI CCWGG 2 cut(s) 241, 278
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 6 cut(s) 21, 30, 302, 325, 359, 943
NarI GGCGCC 1 cut(s) 36
NdeII GATC 1 cut(s) 1390
NlaIII CATG 1 cut(s) 730
NlaIV GGNNCC 6 cut(s) 37, 834, 1038, 1068, 1245, 1495
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 4 cut(s) 43, 118, 674, 1333
NspV TTCGAA 1 cut(s) 140
PasI CCCWGGG 1 cut(s) 240
PcsI WCGNNNNNNNCGW 3 cut(s) 55, 128, 741
PdmI GAANNNNTTC 2 cut(s) 101, 604
PfeI GAWTC 2 cut(s) 841, 965
PkrI GCNGC 6 cut(s) 35, 487, 502, 577, 1441, 1502
PleI GAGTC 1 cut(s) 1410
PluTI GGCGCC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 1410
PshAI GACNNNNGTC 1 cut(s) 1080
Psp6I CCWGG 2 cut(s) 239, 276
PspGI CCWGG 2 cut(s) 239, 276
PspN4I GGNNCC 6 cut(s) 37, 834, 1038, 1068, 1245, 1495
PspPI GGNCC 1 cut(s) 1353
PsrI GAACNNNNNNTAC 2 cut(s) 1363, 1395
PstI CTGCAG 1 cut(s) 457
PstNI CAGNNNCTG 1 cut(s) 578
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 7 cut(s) 82, 227, 275, 398, 1257, 1291, 1512
RsaNI GTAC 7 cut(s) 81, 226, 274, 397, 1256, 1290, 1511
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 3 cut(s) 53, 861, 1407
SatI GCNGC 6 cut(s) 34, 486, 501, 576, 1440, 1501
Sau3AI GATC 1 cut(s) 1390
Sau96I GGNCC 1 cut(s) 1353
ScaI AGTACT 2 cut(s) 82, 1512
SchI GAGTC 1 cut(s) 1410
ScrFI CCNGG 2 cut(s) 241, 278
SduI GDGCHC 3 cut(s) 298, 768, 1195
SfaNI GCATC 7 cut(s) 199, 337, 709, 1042, 1162, 1190, 1353
SfcI CTRYAG 1 cut(s) 453
SfoI GGCGCC 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 140
SgrAI CRCCGGYG 1 cut(s) 1297
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 6 cut(s) 54, 151, 376, 774, 858, 1464
SsiI CCGC 5 cut(s) 13, 33, 217, 722, 1295
SspDI GGCGCC 1 cut(s) 35
SspMI CTAG 1 cut(s) 1401
StyD4I CCNGG 2 cut(s) 239, 276
TaaI ACNGT 5 cut(s) 85, 396, 680, 1082, 1190
TaiI ACGT 2 cut(s) 199, 1333
TaqI TCGA 6 cut(s) 58, 73, 140, 744, 1114, 1448
TasI AATT 6 cut(s) 54, 151, 376, 774, 858, 1464
TatI WGTACW 4 cut(s) 80, 225, 396, 1510
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 2 cut(s) 841, 965
Tru1I TTAA 3 cut(s) 53, 861, 1407
Tru9I TTAA 3 cut(s) 53, 861, 1407
TscAI CASTG 2 cut(s) 787, 1195
TseFI GTSAC 4 cut(s) 43, 118, 674, 1333
TseI GCWGC 5 cut(s) 485, 500, 575, 1439, 1500
Tsp45I GTSAC 4 cut(s) 43, 118, 674, 1333
TspDTI ATGAA 9 cut(s) 94, 480, 494, 606, 645, 714, 807, 900, 1236
TspGWI ACGGA 1 cut(s) 1506
TspRI CASTG 2 cut(s) 787, 1195
VneI GTGCAC 2 cut(s) 294, 1191
XagI CCTNNNNNAGG 1 cut(s) 1284
XapI RAATTY 3 cut(s) 151, 774, 1464
XbaI TCTAGA 1 cut(s) 1400
XmnI GAANNNNTTC 2 cut(s) 101, 604
XspI CTAG 1 cut(s) 1401
ZraI GACGTC 1 cut(s) 197
ZrmI AGTACT 2 cut(s) 82, 1512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.