Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001724

Physical Location & Seq

Genomic Coordinates Forward (+)

19033611 .. 19041847

Gene Structure 8237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGATAGCAAAACTACTAATTCCATTGCAATCCTCATGAACCAAAAAGAATGCAACGGAGAGGTGGAAAAGATTCACCAACCGGAACATGCGCTTCCGTGGTTCAAGTCATGGAAGCATTTATCGTGGGTTGCGATTCGAGATCGGTTAGCGTATGATCTGCTAGATCAAATAAATTATCGTTCAAAAAAAGATGATGAAGAACAAGAGGGAACAAAGAAAAATAGACTTGGACTCAAGAGAAGAGGTGGTGATGATGAAGGAAACATCTCAGATAATAGTGATGAGGAAGAAGATGTAGCAAGGAAAAACAGACTTGAACTCGAGAGAACGGTGGCGATGATGAAGGTACAAGTGGAGATGATGACTTTGATAATGATGATAGTGAGAAGGCTTGAGGAGATTTGCAGCGATGATGATGAAAATAATACAAAGGAAATAGAAGACTTTGCAACCGAGGATGATGAGGAAGATGATAATAATGAAGAGGAGCGTGGACTCGGTGAATCAGGAAAAGAATTGAAGAAACTACTTGGGCAACTCACCGAGTCGATACACGGGATGACGACGAAACTAAGAACAAAACAGTCATTCCGGATCGACTCGACTACCCCATCTACCTCCAAGCCATCCAAAGGGATGAGAAAACGATATGATGATGATGCCGAGGCATTTAGCTGTGCACCTCCCCGTAATCATGATAAAAAACCTTCCATAAAAGAAAAGCCTGCATCCGCTAGTCCTATCGGTGAGGAAGAAATCAGGGCTGTTCTTGAGAAAGAACTAGCAATTTCCTTACAAGACCTTGTTGACCACTATCCAGGAAGAGTCGAATCGAATGAGAAAGTAAATATTAATATGAAAACAGATGTAGCAGCGGAGAAAACATATAAGGGTTTGGTACCTTCTGCACTAAACAGCCGATATGTTGGTGGAACACTTAGAGGTGTGGTTCAAGTGAGACGTGGCTGGGGGTCTTTTCATGGTGATCTTTGGGGAGGTTCGGTTGCCCTGTCGGGCGATCTGACCTTCGCTTTGATGGGCTTCGCAGCTAGAGGTGTGGCACTAACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008022

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_alpha

Protein Analysis

358

Amino Acids

40.36

Weight (kDa)

5.3

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12610 AT4G12610
fragaria_vesca	FvH4_2g22070 FvH4_2g22070 FvH4_2g22070 FvH4_3g01042
malus_domestica	MD05G1357300.v1.1 MD10G1331000.v1.1
prunus_persica	Prupe.4G011300_v2.0.a1 Prupe.4G011300_v2.0.a1
pyrus_communis	pycom05g32330 pycom10g28050
rosa_chinensis	RchiOBHm_Chr5g0001581 RchiOBHm_Chr6g0288941
rosa_laevigata	RLG00000009133 RLG00000012342 RLG00000012344 RLG00000030944
rosa_multiflora	Rmu_sc0003749.1_g000001 Rmu_sc0006320.1_g000007 Rmu_sc0007182.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074740 Rroxscaffold_7G00179460 Rroxscaffold_7G00179470 Rroxscaffold_7G00179490
rosa_rugosa	Rorug04G0391100 Rorug06G0199700 Rorug06G0201700
rosa_samantha	Rh2BG455300 Rh2DG465300 Rh5AG012500 Rh5BG015400 Rh5CG013500 Rh5CG313700 Rh5DG013300 Rh6AG312800 Rh6BG317400 Rh6BG319600 Rh6CG326300 Rh6DG312400
rosa_wichuraiana	Rw0G003180 Rw0G005580 Rw1G016380 Rw2G040560 Rw5G001200 Rw6G027030 Rw7G019510 Rw7G019540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	901
AccB1I	GGYRCC	1 cut(s)	901
AccIII	TCCGGA	1 cut(s)	594
AciI	CCGC	2 cut(s)	735, 878
AclWI	GGATC	1 cut(s)	605
AfaI	GTAC	2 cut(s)	351, 903
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	5 cut(s)	106, 186, 320, 523, 956
AjiI	CACGTC	1 cut(s)	965
AjnI	CCWGG	1 cut(s)	820
AluBI	AGCT	2 cut(s)	678, 1052
AluI	AGCT	2 cut(s)	678, 1052
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	1 cut(s)	955
Alw44I	GTGCAC	1 cut(s)	681
AlwI	GGATC	1 cut(s)	605
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	594
ApaLI	GTGCAC	1 cut(s)	681
ApeKI	GCWGC	3 cut(s)	408, 875, 1049
ArsI	GACNNNNNNTTYG	2 cut(s)	1018, 1050
AseI	ATTAAT	1 cut(s)	855
Asp700I	GAANNNNTTC	1 cut(s)	72
Asp718I	GGTACC	1 cut(s)	901
AspLEI	GCGC	1 cut(s)	94
AsuHPI	GGTGA	6 cut(s)	68, 263, 515, 535, 761, 998
AvaI	CYCGRG	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	901
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	3 cut(s)	420, 887, 1061
BccI	CCATC	3 cut(s)	622, 637, 1033
BciT130I	CCWGG	1 cut(s)	822
BcoDI	GTCTC	1 cut(s)	955
BfaI	CTAG	4 cut(s)	164, 738, 785, 1053
BisI	GCNGC	3 cut(s)	409, 876, 1050
BlsI	GCNGC	3 cut(s)	410, 877, 1051
Bme1390I	CCNGG	1 cut(s)	822
BmeT110I	CYCGRG	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	965
BmiI	GGNNCC	1 cut(s)	903
BmrFI	CCNGG	1 cut(s)	822
BmsI	GCATC	2 cut(s)	652, 740
BpiI	GAAGAC	1 cut(s)	450
BpuEI	CTTGAG	3 cut(s)	221, 416, 794
BsaJI	CCNNGG	3 cut(s)	98, 456, 666
BsaWI	WCCGGW	2 cut(s)	82, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	990, 1020
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse3DI	GCAATG	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	822
BseDI	CCNNGG	3 cut(s)	98, 456, 666
BseGI	GGATG	5 cut(s)	466, 567, 629, 645, 731
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	285
BseRI	GAGGAG	2 cut(s)	413, 503
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	3 cut(s)	420, 887, 1061
BseYI	CCCAGC	1 cut(s)	969
BsgI	GTGCAG	1 cut(s)	894
BshNI	GGYRCC	1 cut(s)	901
BsiHKAI	GWGCWC	1 cut(s)	685
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	83, 595
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	1 cut(s)	955
BsmBI	CGTCTC	1 cut(s)	955
BsmI	GAATGC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp13I	TCCGGA	1 cut(s)	594
Bsp143I	GATC	6 cut(s)	142, 157, 166, 597, 988, 1021
BspACI	CCGC	2 cut(s)	735, 878
BspCNI	CTCAG	1 cut(s)	284
BspEI	TCCGGA	1 cut(s)	594
BspHI	TCATGA	2 cut(s)	36, 697
BspLI	GGNNCC	1 cut(s)	903
BspPI	GGATC	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	901
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	3 cut(s)	98, 456, 666
BssMI	GATC	6 cut(s)	142, 157, 166, 597, 988, 1021
Bst2UI	CCWGG	1 cut(s)	822
Bst4CI	ACNGT	2 cut(s)	334, 588
Bst6I	CTCTTC	3 cut(s)	238, 480, 820
BstC8I	GCNNGC	1 cut(s)	729
BstDEI	CTNAG	3 cut(s)	271, 575, 941
BstDSI	CCRYGG	1 cut(s)	98
BstF5I	GGATG	5 cut(s)	466, 567, 629, 645, 731
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	6 cut(s)	145, 160, 169, 600, 991, 1024
BstMAI	GTCTC	1 cut(s)	955
BstMBI	GATC	6 cut(s)	142, 157, 166, 597, 988, 1021
BstNI	CCWGG	1 cut(s)	822
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	820
BstSLI	GKGCMC	1 cut(s)	685
BstV1I	GCAGC	3 cut(s)	420, 887, 1061
BstV2I	GAAGAC	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	98
BtgZI	GCGATG	2 cut(s)	353, 426
BtrI	CACGTC	1 cut(s)	965
BtsCI	GGATG	5 cut(s)	466, 567, 629, 645, 731
Cac8I	GCNNGC	1 cut(s)	729
CciI	TCATGA	2 cut(s)	36, 697
CfoI	GCGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	350, 902
CviAII	CATG	5 cut(s)	37, 89, 111, 698, 983
CviJI	RGCY	9 cut(s)	394, 628, 678, 727, 767, 921, 969, 1044, 1052
CviKI_1	RGCY	9 cut(s)	394, 628, 678, 727, 767, 921, 969, 1044, 1052
CviQI	GTAC	2 cut(s)	350, 902
DdeI	CTNAG	3 cut(s)	271, 575, 941
DpnI	GATC	6 cut(s)	144, 159, 168, 599, 990, 1023
DpnII	GATC	6 cut(s)	142, 157, 166, 597, 988, 1021
Eam1104I	CTCTTC	3 cut(s)	238, 480, 820
EarI	CTCTTC	3 cut(s)	238, 480, 820
Eco88I	CYCGRG	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	820
Esp3I	CGTCTC	1 cut(s)	955
FaeI	CATG	5 cut(s)	40, 92, 114, 701, 986
FatI	CATG	5 cut(s)	36, 88, 110, 697, 982
Fnu4HI	GCNGC	3 cut(s)	409, 876, 1050
FokI	GGATG	5 cut(s)	473, 574, 616, 652, 718
Fsp4HI	GCNGC	3 cut(s)	409, 876, 1050
FspBI	CTAG	4 cut(s)	164, 738, 785, 1053
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	3 cut(s)	409, 876, 1050
GsaI	CCCAGC	1 cut(s)	973
HapII	CCGG	2 cut(s)	83, 595
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	5 cut(s)	40, 92, 114, 701, 986
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HinfI	GANTC	9 cut(s)	73, 136, 234, 498, 506, 548, 602, 828, 833
HpaII	CCGG	2 cut(s)	83, 595
HphI	GGTGA	6 cut(s)	68, 263, 515, 535, 761, 998
Hpy166II	GTNNAC	3 cut(s)	497, 683, 811
Hpy188I	TCNGA	2 cut(s)	274, 1026
Hpy188III	TCNNGA	8 cut(s)	37, 140, 238, 325, 510, 595, 698, 773
Hpy8I	GTNNAC	3 cut(s)	497, 683, 811
Hpy99I	CGWCG	1 cut(s)	571
HpyAV	CCTTC	6 cut(s)	254, 340, 384, 720, 915, 1039
HpyCH4III	ACNGT	2 cut(s)	334, 588
HpyCH4IV	ACGT	1 cut(s)	964
HpyCH4V	TGCA	7 cut(s)	29, 54, 408, 452, 683, 731, 911
HpyF3I	CTNAG	3 cut(s)	271, 575, 941
HpySE526I	ACGT	1 cut(s)	964
Hsp92II	CATG	5 cut(s)	40, 92, 114, 701, 986
HspAI	GCGC	1 cut(s)	92
Kpn2I	TCCGGA	1 cut(s)	594
KpnI	GGTACC	1 cut(s)	905
Kzo9I	GATC	6 cut(s)	142, 157, 166, 597, 988, 1021
LmnI	GCTCC	1 cut(s)	490
LpnPI	CCDG	9 cut(s)	96, 495, 608, 741, 748, 807, 834, 955, 1025
Lsp1109I	GCAGC	3 cut(s)	420, 887, 1061
LweI	GCATC	2 cut(s)	652, 740
MaeI	CTAG	4 cut(s)	164, 738, 785, 1053
MaeII	ACGT	1 cut(s)	964
MalI	GATC	6 cut(s)	144, 159, 168, 599, 990, 1023
MboI	GATC	6 cut(s)	142, 157, 166, 597, 988, 1021
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	4 cut(s)	19, 175, 518, 789
MlyI	GAGTC	5 cut(s)	228, 492, 557, 596, 837
MroI	TCCGGA	1 cut(s)	594
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	1 cut(s)	855
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	2 cut(s)	83, 595
MspR9I	CCNGG	1 cut(s)	822
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	822
NdeII	GATC	6 cut(s)	142, 157, 166, 597, 988, 1021
NlaIII	CATG	5 cut(s)	40, 92, 114, 701, 986
NlaIV	GGNNCC	1 cut(s)	903
NmeAIII	GCCGAG	1 cut(s)	691
NspI	RCATGY	1 cut(s)	92
PaeR7I	CTCGAG	1 cut(s)	323
PagI	TCATGA	2 cut(s)	36, 697
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PctI	GAATGC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	4 cut(s)	73, 136, 506, 833
PfoI	TCCNGGA	1 cut(s)	820
PkrI	GCNGC	3 cut(s)	410, 877, 1051
PleI	GAGTC	5 cut(s)	228, 492, 556, 596, 836
PpsI	GAGTC	5 cut(s)	228, 492, 556, 596, 836
PshBI	ATTAAT	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	820
PspFI	CCCAGC	1 cut(s)	969
PspGI	CCWGG	1 cut(s)	820
PspN4I	GGNNCC	1 cut(s)	903
RsaI	GTAC	2 cut(s)	351, 903
RsaNI	GTAC	2 cut(s)	350, 902
SaqAI	TTAA	1 cut(s)	855
SatI	GCNGC	3 cut(s)	409, 876, 1050
Sau3AI	GATC	6 cut(s)	142, 157, 166, 597, 988, 1021
SchI	GAGTC	5 cut(s)	228, 492, 557, 596, 837
ScrFI	CCNGG	1 cut(s)	822
SduI	GDGCHC	1 cut(s)	685
SfaNI	GCATC	2 cut(s)	652, 740
Sfr274I	CTCGAG	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	4 cut(s)	236, 323, 395, 773
SmoI	CTYRAG	4 cut(s)	236, 323, 395, 773
Sse9I	AATT	4 cut(s)	19, 175, 518, 789
SsiI	CCGC	2 cut(s)	735, 878
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	4 cut(s)	164, 738, 785, 1053
StyD4I	CCNGG	1 cut(s)	820
TaaI	ACNGT	2 cut(s)	334, 588
TaiI	ACGT	1 cut(s)	967
TaqI	TCGA	7 cut(s)	139, 324, 551, 600, 605, 831, 836
TasI	AATT	4 cut(s)	19, 175, 518, 789
TfiI	GAWTC	4 cut(s)	73, 136, 506, 833
Tru1I	TTAA	1 cut(s)	855
Tru9I	TTAA	1 cut(s)	855
TseI	GCWGC	3 cut(s)	408, 875, 1049
TspDTI	ATGAA	8 cut(s)	53, 213, 273, 359, 435, 498, 875, 971
TspGWI	ACGGA	2 cut(s)	72, 87
VneI	GTGCAC	1 cut(s)	681
VspI	ATTAAT	1 cut(s)	855
XceI	RCATGY	1 cut(s)	92
XhoI	CTCGAG	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	4 cut(s)	164, 738, 785, 1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.