Transcription initiation factor IIF subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G12610 AT4G12610 |
| fragaria_vesca | FvH4_2g22070 FvH4_2g22070 FvH4_2g22070 FvH4_3g01042 |
| malus_domestica | MD05G1357300.v1.1 MD10G1331000.v1.1 |
| prunus_persica | Prupe.4G011300_v2.0.a1 Prupe.4G011300_v2.0.a1 |
| pyrus_communis | pycom05g32330 pycom10g28050 |
| rosa_chinensis | RchiOBHm_Chr5g0001581 RchiOBHm_Chr6g0288941 |
| rosa_laevigata | RLG00000009133 RLG00000012342 RLG00000012344 RLG00000030944 |
| rosa_multiflora | Rmu_sc0003749.1_g000001 Rmu_sc0006320.1_g000007 Rmu_sc0007182.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00074740 Rroxscaffold_7G00179460 Rroxscaffold_7G00179470 Rroxscaffold_7G00179490 |
| rosa_rugosa | Rorug04G0391100 Rorug06G0199700 Rorug06G0201700 |
| rosa_samantha | Rh2BG455300 Rh2DG465300 Rh5AG012500 Rh5BG015400 Rh5CG013500 Rh5CG313700 Rh5DG013300 Rh6AG312800 Rh6BG317400 Rh6BG319600 Rh6CG326300 Rh6DG312400 |
| rosa_wichuraiana | Rw0G003180 Rw0G005580 Rw1G016380 Rw2G040560 Rw5G001200 Rw6G027030 Rw7G019510 Rw7G019540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 393 |
| AccB1I | GGYRCC | 1 cut(s) | 35 |
| AccII | CGCG | 2 cut(s) | 15, 1335 |
| AciI | CCGC | 4 cut(s) | 13, 33, 217, 1443 |
| AcoI | YGGCCR | 1 cut(s) | 262 |
| AcsI | RAATTY | 4 cut(s) | 151, 777, 1406, 1467 |
| AcuI | CTGAAG | 2 cut(s) | 444, 1413 |
| AcyI | GRCGYC | 2 cut(s) | 36, 196 |
| AfaI | GTAC | 6 cut(s) | 82, 227, 275, 561, 1294, 1512 |
| AfeI | AGCGCT | 1 cut(s) | 1035 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1148, 1289 |
| AflIII | ACRYGT | 1 cut(s) | 1333 |
| AgsI | TTSAA | 7 cut(s) | 158, 290, 376, 382, 661, 934, 1473 |
| AjnI | CCWGG | 1 cut(s) | 276 |
| AluBI | AGCT | 8 cut(s) | 422, 485, 500, 575, 800, 851, 940, 1503 |
| AluI | AGCT | 8 cut(s) | 422, 485, 500, 575, 800, 851, 940, 1503 |
| Alw21I | GWGCWC | 3 cut(s) | 298, 771, 1198 |
| Alw26I | GTCTC | 1 cut(s) | 174 |
| Alw44I | GTGCAC | 2 cut(s) | 294, 1194 |
| Aor51HI | AGCGCT | 1 cut(s) | 1035 |
| AoxI | GGCC | 1 cut(s) | 262 |
| ApaLI | GTGCAC | 2 cut(s) | 294, 1194 |
| ApeKI | GCWGC | 3 cut(s) | 485, 500, 1500 |
| ApoI | RAATTY | 4 cut(s) | 151, 777, 1406, 1467 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1432, 1464 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 101 |
| AspLEI | GCGC | 5 cut(s) | 17, 38, 394, 1036, 1282 |
| AsuHPI | GGTGA | 9 cut(s) | 524, 593, 686, 695, 701, 731, 767, 1330, 1375 |
| AsuII | TTCGAA | 2 cut(s) | 140, 1451 |
| AxyI | CCTNAGG | 1 cut(s) | 816 |
| BaeGI | GKGCMC | 2 cut(s) | 298, 1198 |
| BanI | GGYRCC | 1 cut(s) | 35 |
| BbsI | GAAGAC | 1 cut(s) | 1423 |
| Bbv12I | GWGCWC | 3 cut(s) | 298, 771, 1198 |
| BbvI | GCAGC | 3 cut(s) | 472, 487, 1512 |
| BccI | CCATC | 8 cut(s) | 176, 452, 465, 671, 680, 1081, 1244, 1324 |
| BceAI | ACGGC | 1 cut(s) | 23 |
| BciT130I | CCWGG | 1 cut(s) | 278 |
| BcoDI | GTCTC | 1 cut(s) | 174 |
| BfmI | CTRYAG | 1 cut(s) | 453 |
| BfoI | RGCGCY | 2 cut(s) | 39, 1037 |
| BisI | GCNGC | 4 cut(s) | 34, 486, 501, 1501 |
| BlsI | GCNGC | 4 cut(s) | 35, 487, 502, 1502 |
| BmcAI | AGTACT | 2 cut(s) | 82, 1512 |
| Bme1390I | CCNGG | 1 cut(s) | 278 |
| BmiI | GGNNCC | 7 cut(s) | 37, 837, 1041, 1071, 1248, 1314, 1495 |
| BmrFI | CCNGG | 1 cut(s) | 278 |
| BmrI | ACTGGG | 1 cut(s) | 772 |
| BmsI | GCATC | 3 cut(s) | 199, 1045, 1356 |
| BmuI | ACTGGG | 1 cut(s) | 772 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1083 |
| BpiI | GAAGAC | 1 cut(s) | 1423 |
| BpmI | CTGGAG | 2 cut(s) | 840, 1014 |
| Bpu14I | TTCGAA | 2 cut(s) | 140, 1451 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1002 |
| BsaHI | GRCGYC | 2 cut(s) | 36, 196 |
| BsaI | GGTCTC | 1 cut(s) | 174 |
| BsaJI | CCNNGG | 3 cut(s) | 239, 277, 1341 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 708, 738, 1238, 1268, 1304, 1334 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1148, 1289 |
| Bse1I | ACTGG | 2 cut(s) | 767, 1113 |
| Bse21I | CCTNAGG | 1 cut(s) | 816 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1002 |
| BseBI | CCWGG | 1 cut(s) | 278 |
| BseDI | CCNNGG | 3 cut(s) | 239, 277, 1341 |
| BseJI | GATNNNNATC | 1 cut(s) | 1002 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1148, 1289 |
| BseMII | CTCAG | 4 cut(s) | 284, 621, 807, 902 |
| BseNI | ACTGG | 2 cut(s) | 767, 1113 |
| BseRI | GAGGAG | 3 cut(s) | 843, 1259, 1358 |
| BseSI | GKGCMC | 2 cut(s) | 298, 1198 |
| BseXI | GCAGC | 3 cut(s) | 472, 487, 1512 |
| Bsh1236I | CGCG | 2 cut(s) | 15, 1335 |
| BshFI | GGCC | 1 cut(s) | 264 |
| BshNI | GGYRCC | 1 cut(s) | 35 |
| BsiHKAI | GWGCWC | 3 cut(s) | 298, 771, 1198 |
| BslFI | GGGAC | 1 cut(s) | 1071 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1148, 1289 |
| BsmAI | GTCTC | 1 cut(s) | 174 |
| BsmFI | GGGAC | 1 cut(s) | 1071 |
| BsnI | GGCC | 1 cut(s) | 264 |
| Bso31I | GGTCTC | 1 cut(s) | 174 |
| Bsp119I | TTCGAA | 2 cut(s) | 140, 1451 |
| Bsp1286I | GDGCHC | 3 cut(s) | 298, 771, 1198 |
| Bsp143I | GATC | 3 cut(s) | 266, 1003, 1393 |
| Bsp19I | CCATGG | 1 cut(s) | 239 |
| BspACI | CCGC | 4 cut(s) | 13, 33, 217, 1443 |
| BspANI | GGCC | 1 cut(s) | 264 |
| BspCNI | CTCAG | 4 cut(s) | 283, 620, 808, 903 |
| BspFNI | CGCG | 2 cut(s) | 15, 1335 |
| BspLI | GGNNCC | 7 cut(s) | 37, 837, 1041, 1071, 1248, 1314, 1495 |
| BspMAI | CTGCAG | 1 cut(s) | 457 |
| BspT104I | TTCGAA | 2 cut(s) | 140, 1451 |
| BspT107I | GGYRCC | 1 cut(s) | 35 |
| BspTNI | GGTCTC | 1 cut(s) | 174 |
| BsrI | ACTGG | 2 cut(s) | 767, 1113 |
| BssECI | CCNNGG | 3 cut(s) | 239, 277, 1341 |
| BssMI | GATC | 3 cut(s) | 266, 1003, 1393 |
| BssNI | GRCGYC | 2 cut(s) | 36, 196 |
| BssT1I | CCWWGG | 1 cut(s) | 239 |
| Bst2UI | CCWGG | 1 cut(s) | 278 |
| Bst4CI | ACNGT | 2 cut(s) | 1085, 1193 |
| Bst6I | CTCTTC | 2 cut(s) | 420, 630 |
| BstACI | GRCGYC | 2 cut(s) | 36, 196 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 30, 302 |
| BstBI | TTCGAA | 2 cut(s) | 140, 1451 |
| BstC8I | GCNNGC | 1 cut(s) | 1038 |
| BstDEI | CTNAG | 7 cut(s) | 203, 270, 607, 816, 911, 1179, 1460 |
| BstDSI | CCRYGG | 1 cut(s) | 239 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1287 |
| BstFNI | CGCG | 2 cut(s) | 15, 1335 |
| BstH2I | RGCGCY | 2 cut(s) | 39, 1037 |
| BstHHI | GCGC | 5 cut(s) | 17, 38, 394, 1036, 1282 |
| BstKTI | GATC | 3 cut(s) | 269, 1006, 1396 |
| BstMAI | GTCTC | 1 cut(s) | 174 |
| BstMBI | GATC | 3 cut(s) | 266, 1003, 1393 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 21, 30, 83, 302, 359, 400, 946 |
| BstNI | CCWGG | 1 cut(s) | 278 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1083 |
| BstSCI | CCNGG | 1 cut(s) | 276 |
| BstSFI | CTRYAG | 1 cut(s) | 453 |
| BstSLI | GKGCMC | 2 cut(s) | 298, 1198 |
| BstUI | CGCG | 2 cut(s) | 15, 1335 |
| BstV1I | GCAGC | 3 cut(s) | 472, 487, 1512 |
| BstV2I | GAAGAC | 1 cut(s) | 1423 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 182 |
| Bsu36I | CCTNAGG | 1 cut(s) | 816 |
| BsuRI | GGCC | 1 cut(s) | 264 |
| BtgI | CCRYGG | 1 cut(s) | 239 |
| BtgZI | GCGATG | 1 cut(s) | 1185 |
| BtsIMutI | CAGTG | 2 cut(s) | 783, 1198 |
| Cac8I | GCNNGC | 1 cut(s) | 1038 |
| CfoI | GCGC | 5 cut(s) | 17, 38, 394, 1036, 1282 |
| CseI | GACGC | 4 cut(s) | 204, 1098, 1324, 1341 |
| Csp6I | GTAC | 6 cut(s) | 81, 226, 274, 560, 1293, 1511 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 886, 921 |
| CviAII | CATG | 3 cut(s) | 214, 240, 730 |
| CviQI | GTAC | 6 cut(s) | 81, 226, 274, 560, 1293, 1511 |
| DdeI | CTNAG | 7 cut(s) | 203, 270, 607, 816, 911, 1179, 1460 |
| DinI | GGCGCC | 1 cut(s) | 37 |
| DpnI | GATC | 3 cut(s) | 268, 1005, 1395 |
| DpnII | GATC | 3 cut(s) | 266, 1003, 1393 |
| EaeI | YGGCCR | 1 cut(s) | 262 |
| Eam1104I | CTCTTC | 2 cut(s) | 420, 630 |
| EarI | CTCTTC | 2 cut(s) | 420, 630 |
| Eco130I | CCWWGG | 1 cut(s) | 239 |
| Eco31I | GGTCTC | 1 cut(s) | 174 |
| Eco32I | GATATC | 1 cut(s) | 745 |
| Eco47III | AGCGCT | 1 cut(s) | 1035 |
| Eco57I | CTGAAG | 2 cut(s) | 444, 1413 |
| Eco81I | CCTNAGG | 1 cut(s) | 816 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1287 |
| EcoRII | CCWGG | 1 cut(s) | 276 |
| EcoRV | GATATC | 1 cut(s) | 745 |
| EcoT14I | CCWWGG | 1 cut(s) | 239 |
| EgeI | GGCGCC | 1 cut(s) | 37 |
| EheI | GGCGCC | 1 cut(s) | 37 |
| ErhI | CCWWGG | 1 cut(s) | 239 |
| FaeI | CATG | 3 cut(s) | 217, 243, 733 |
| FaiI | YATR | 7 cut(s) | 66, 215, 241, 465, 731, 1506, 1508 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 86, 118 |
| FaqI | GGGAC | 1 cut(s) | 1071 |
| FatI | CATG | 3 cut(s) | 213, 239, 729 |
| FauI | CCCGC | 1 cut(s) | 210 |
| Fnu4HI | GCNGC | 4 cut(s) | 34, 486, 501, 1501 |
| Fsp4HI | GCNGC | 4 cut(s) | 34, 486, 501, 1501 |
| FspI | TGCGCA | 1 cut(s) | 393 |
| GlaI | GCGC | 5 cut(s) | 16, 37, 393, 1035, 1281 |
| GluI | GCNGC | 4 cut(s) | 34, 486, 501, 1501 |
| GsuI | CTGGAG | 2 cut(s) | 840, 1014 |
| HaeII | RGCGCY | 2 cut(s) | 39, 1037 |
| HaeIII | GGCC | 1 cut(s) | 264 |
| HgaI | GACGC | 4 cut(s) | 204, 1098, 1324, 1341 |
| HhaI | GCGC | 5 cut(s) | 17, 38, 394, 1036, 1282 |
| Hin1I | GRCGYC | 2 cut(s) | 36, 196 |
| Hin1II | CATG | 3 cut(s) | 217, 243, 733 |
| Hin6I | GCGC | 5 cut(s) | 15, 36, 392, 1034, 1280 |
| HinP1I | GCGC | 5 cut(s) | 15, 36, 392, 1034, 1280 |
| HinfI | GANTC | 4 cut(s) | 844, 968, 1175, 1419 |
| HphI | GGTGA | 9 cut(s) | 524, 593, 686, 695, 701, 731, 767, 1330, 1375 |
| Hpy166II | GTNNAC | 6 cut(s) | 296, 727, 908, 959, 1196, 1331 |
| Hpy188I | TCNGA | 4 cut(s) | 610, 973, 1078, 1432 |
| Hpy188III | TCNNGA | 9 cut(s) | 59, 287, 336, 748, 815, 857, 921, 1007, 1213 |
| Hpy8I | GTNNAC | 6 cut(s) | 296, 727, 908, 959, 1196, 1331 |
| Hpy99I | CGWCG | 2 cut(s) | 44, 992 |
| HpyCH4III | ACNGT | 2 cut(s) | 1085, 1193 |
| HpyCH4V | TGCA | 8 cut(s) | 24, 296, 305, 455, 488, 1058, 1196, 1369 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 21, 30, 83, 302, 359, 400, 946 |
| HpyF3I | CTNAG | 7 cut(s) | 203, 270, 607, 816, 911, 1179, 1460 |
| Hsp92I | GRCGYC | 2 cut(s) | 36, 196 |
| Hsp92II | CATG | 3 cut(s) | 217, 243, 733 |
| HspAI | GCGC | 5 cut(s) | 15, 36, 392, 1034, 1280 |
| KasI | GGCGCC | 1 cut(s) | 35 |
| Kzo9I | GATC | 3 cut(s) | 266, 1003, 1393 |
| LmnI | GCTCC | 6 cut(s) | 497, 766, 856, 1045, 1246, 1312 |
| Lsp1109I | GCAGC | 3 cut(s) | 472, 487, 1512 |
| LweI | GCATC | 3 cut(s) | 199, 1045, 1356 |
| MaeIII | GTNAC | 3 cut(s) | 43, 118, 1336 |
| MalI | GATC | 3 cut(s) | 268, 1005, 1395 |
| MboI | GATC | 3 cut(s) | 266, 1003, 1393 |
| MhlI | GDGCHC | 3 cut(s) | 298, 771, 1198 |
| MluCI | AATT | 7 cut(s) | 54, 151, 376, 777, 861, 1406, 1467 |
| MluI | ACGCGT | 1 cut(s) | 1333 |
| Mly113I | GGCGCC | 1 cut(s) | 36 |
| MlyI | GAGTC | 1 cut(s) | 1413 |
| MmeI | TCCRAC | 2 cut(s) | 621, 784 |
| MroXI | GAANNNNTTC | 1 cut(s) | 101 |
| MseI | TTAA | 3 cut(s) | 53, 864, 1410 |
| MslI | CAYNNNNRTG | 1 cut(s) | 180 |
| MspA1I | CMGCKG | 1 cut(s) | 575 |
| MspR9I | CCNGG | 1 cut(s) | 278 |
| MvaI | CCWGG | 1 cut(s) | 278 |
| MvnI | CGCG | 2 cut(s) | 15, 1335 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 21, 30, 83, 302, 359, 400, 946 |
| NarI | GGCGCC | 1 cut(s) | 36 |
| NcoI | CCATGG | 1 cut(s) | 239 |
| NdeII | GATC | 3 cut(s) | 266, 1003, 1393 |
| NlaIII | CATG | 3 cut(s) | 217, 243, 733 |
| NlaIV | GGNNCC | 7 cut(s) | 37, 837, 1041, 1071, 1248, 1314, 1495 |
| NmeAIII | GCCGAG | 1 cut(s) | 156 |
| NmuCI | GTSAC | 3 cut(s) | 43, 118, 1336 |
| NsbI | TGCGCA | 1 cut(s) | 393 |
| NspV | TTCGAA | 2 cut(s) | 140, 1451 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 55, 128, 993, 1316 |
| PdmI | GAANNNNTTC | 1 cut(s) | 101 |
| PfeI | GAWTC | 3 cut(s) | 844, 968, 1175 |
| PkrI | GCNGC | 4 cut(s) | 35, 487, 502, 1502 |
| PleI | GAGTC | 1 cut(s) | 1413 |
| PluTI | GGCGCC | 1 cut(s) | 39 |
| PpsI | GAGTC | 1 cut(s) | 1413 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1083 |
| Psp6I | CCWGG | 1 cut(s) | 276 |
| PspGI | CCWGG | 1 cut(s) | 276 |
| PspN4I | GGNNCC | 7 cut(s) | 37, 837, 1041, 1071, 1248, 1314, 1495 |
| PstI | CTGCAG | 1 cut(s) | 457 |
| PvuII | CAGCTG | 1 cut(s) | 575 |
| RsaI | GTAC | 6 cut(s) | 82, 227, 275, 561, 1294, 1512 |
| RsaNI | GTAC | 6 cut(s) | 81, 226, 274, 560, 1293, 1511 |
| RseI | CAYNNNNRTG | 1 cut(s) | 180 |
| SaqAI | TTAA | 3 cut(s) | 53, 864, 1410 |
| SatI | GCNGC | 4 cut(s) | 34, 486, 501, 1501 |
| Sau3AI | GATC | 3 cut(s) | 266, 1003, 1393 |
| ScaI | AGTACT | 2 cut(s) | 82, 1512 |
| SchI | GAGTC | 1 cut(s) | 1413 |
| ScrFI | CCNGG | 1 cut(s) | 278 |
| SduI | GDGCHC | 3 cut(s) | 298, 771, 1198 |
| SfaNI | GCATC | 3 cut(s) | 199, 1045, 1356 |
| SfcI | CTRYAG | 1 cut(s) | 453 |
| SfoI | GGCGCC | 1 cut(s) | 37 |
| SfuI | TTCGAA | 2 cut(s) | 140, 1451 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 180 |
| Sse9I | AATT | 7 cut(s) | 54, 151, 376, 777, 861, 1406, 1467 |
| SsiI | CCGC | 4 cut(s) | 13, 33, 217, 1443 |
| SspDI | GGCGCC | 1 cut(s) | 35 |
| SspI | AATATT | 1 cut(s) | 1456 |
| StyD4I | CCNGG | 1 cut(s) | 276 |
| StyI | CCWWGG | 1 cut(s) | 239 |
| TaaI | ACNGT | 2 cut(s) | 1085, 1193 |
| TaqI | TCGA | 6 cut(s) | 58, 73, 140, 747, 1117, 1451 |
| TasI | AATT | 7 cut(s) | 54, 151, 376, 777, 861, 1406, 1467 |
| TatI | WGTACW | 3 cut(s) | 80, 225, 1510 |
| TauI | GCSGC | 1 cut(s) | 36 |
| TfiI | GAWTC | 3 cut(s) | 844, 968, 1175 |
| Tru1I | TTAA | 3 cut(s) | 53, 864, 1410 |
| Tru9I | TTAA | 3 cut(s) | 53, 864, 1410 |
| TscAI | CASTG | 2 cut(s) | 790, 1198 |
| TseFI | GTSAC | 3 cut(s) | 43, 118, 1336 |
| TseI | GCWGC | 3 cut(s) | 485, 500, 1500 |
| Tsp45I | GTSAC | 3 cut(s) | 43, 118, 1336 |
| TspDTI | ATGAA | 9 cut(s) | 94, 480, 494, 606, 648, 717, 810, 903, 1239 |
| TspGWI | ACGGA | 2 cut(s) | 1325, 1506 |
| TspRI | CASTG | 2 cut(s) | 790, 1198 |
| VneI | GTGCAC | 2 cut(s) | 294, 1194 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1287 |
| XapI | RAATTY | 4 cut(s) | 151, 777, 1406, 1467 |
| XmnI | GAANNNNTTC | 1 cut(s) | 101 |
| ZrmI | AGTACT | 2 cut(s) | 82, 1512 |