pycom10g28050

Transcription initiation factor IIF subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
28801281 .. 28804692
3412 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28050.8

Sequence Viewer

Length: 1527 bp
ATGGCTCTCAACCGCGCCAAGTGCAACGAGTGCGGCGCCGTCGTCACTCGCTTAATTCGAGAGTATAATGTTCGAGCGAGTACTGCCAACGATAAGAACTACTTCATTGGGAGATTTGTGACGGGGTTGCCGAGTTTTTCGAAGAACAAGAATTTTGAAAATAAATGGTCTCTCCACAAAGATGGACTACAAGGACGCCAACTTAGTGATGCCATGCGGGAGAAGTACAAGAACAAACCATGGGTTTTGGAGGACGAAAGTGGCCGATCTCAGTACCAGGGTCATCTTGAAGGTGCACAGACTGCAACTTACTACTTACTAATAAAACATCCTTCTGGAAAGGAGTTTTCTGCTATTCCTGCTGGTTCTTGGTTCAATTTCAACAAGGTTGCGCAATACAAGCAACTTACATTGGAGGAAGCTGAAGAGAAGATTAGTAATAGGAAAAAGACTGCAGATGGGTATGAAAGATGGATGATGAAAGCTGCAAATAATGGAGCTGCTTTATTTGGTGAAGTAGAGAGGCTTGACAAGGATAATGGTGGGGCTGGTGGGAAGGTACGAAGAAAGACAGCTGGTGGTGATGATGATGAAGAAGGAAATGGCTCAGATAGAGGGGATGAGGATGATGATGAAGAGTTGGAAAGGAAAAAAAGATTGAATAAAAGAGGTGGTGATGGTGGTGATGGTGATGATGATAATGAAGGTGTAGGGGGAGGTGATGTGGACATGGATGATGATGATATCGAGAAGGGTGATGACTGGGAGCACGAAGAAATTTTCACTGATGATGATGAAGCTGTTGGAAACAATCCTGAGGAAAGGGAAGATTTGGAACCAGAGATTCCAGCTCCTCCAGAAATTAAGCAGGATGATGAGGACGAGGATGAAGATGACAAAGAGGGTGGACTGAGCAAATCAGGAAAAGAGTTGAAGAAGCTACTTGGGCGAAGTGGTGGACTGAATGATTCAGATGTAGAGGATGACGACGATGACGATGATGATCTGGATGATGATATTGGCTTTCCTCCAGCGCTGGCTCCAAAGCAGAAGGATGCACCCAAAGAGGAACCATCTGACAACAGTCCCTCAAAACCAACACCTTCTGCGTCCAGTCGAGGAACTACACCAACCTCCAAACCCTCAAAGGGAAAGAGAAAATCAAGTGGCGATGATTCTAAGGCAACGAACAGTGCACCTCCCAAGAAGGTCAAGACTGAAAATGAACAAAAATCCATCAAAGAGGAGCCTGTGTCTGTGTCTGCTTCTAAAAGTAGTGCGCCTCCAAAAGGTACTCCACCCGTGAAAACGGAGCCATCGTCATCTGGTGGACGCGTCACCGAGGAGGAAATCAGGGCTGTATTGATGCAGAGAACACCACTCACCACAAATGATCTTGTATCTAAATTTAAGGGAAGACTCAAATCTTCAGAGGAAAAGACCGCTTTTTCGAATATTCTAAGGAGAATTTCAAAGATAAAGAAGGGGAACGGAACCAGCAGCTATATAGTACTGAAAGAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

55.86

Weight (kDa)

4.88

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 393
AccB1I GGYRCC 1 cut(s) 35
AccII CGCG 2 cut(s) 15, 1335
AciI CCGC 4 cut(s) 13, 33, 217, 1443
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 4 cut(s) 151, 777, 1406, 1467
AcuI CTGAAG 2 cut(s) 444, 1413
AcyI GRCGYC 2 cut(s) 36, 196
AfaI GTAC 6 cut(s) 82, 227, 275, 561, 1294, 1512
AfeI AGCGCT 1 cut(s) 1035
AfiI CCNNNNNNNGG 2 cut(s) 1148, 1289
AflIII ACRYGT 1 cut(s) 1333
AgsI TTSAA 7 cut(s) 158, 290, 376, 382, 661, 934, 1473
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 8 cut(s) 422, 485, 500, 575, 800, 851, 940, 1503
AluI AGCT 8 cut(s) 422, 485, 500, 575, 800, 851, 940, 1503
Alw21I GWGCWC 3 cut(s) 298, 771, 1198
Alw26I GTCTC 1 cut(s) 174
Alw44I GTGCAC 2 cut(s) 294, 1194
Aor51HI AGCGCT 1 cut(s) 1035
AoxI GGCC 1 cut(s) 262
ApaLI GTGCAC 2 cut(s) 294, 1194
ApeKI GCWGC 3 cut(s) 485, 500, 1500
ApoI RAATTY 4 cut(s) 151, 777, 1406, 1467
ArsI GACNNNNNNTTYG 2 cut(s) 1432, 1464
Asp700I GAANNNNTTC 1 cut(s) 101
AspLEI GCGC 5 cut(s) 17, 38, 394, 1036, 1282
AsuHPI GGTGA 9 cut(s) 524, 593, 686, 695, 701, 731, 767, 1330, 1375
AsuII TTCGAA 2 cut(s) 140, 1451
AxyI CCTNAGG 1 cut(s) 816
BaeGI GKGCMC 2 cut(s) 298, 1198
BanI GGYRCC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 1423
Bbv12I GWGCWC 3 cut(s) 298, 771, 1198
BbvI GCAGC 3 cut(s) 472, 487, 1512
BccI CCATC 8 cut(s) 176, 452, 465, 671, 680, 1081, 1244, 1324
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 453
BfoI RGCGCY 2 cut(s) 39, 1037
BisI GCNGC 4 cut(s) 34, 486, 501, 1501
BlsI GCNGC 4 cut(s) 35, 487, 502, 1502
BmcAI AGTACT 2 cut(s) 82, 1512
Bme1390I CCNGG 1 cut(s) 278
BmiI GGNNCC 7 cut(s) 37, 837, 1041, 1071, 1248, 1314, 1495
BmrFI CCNGG 1 cut(s) 278
BmrI ACTGGG 1 cut(s) 772
BmsI GCATC 3 cut(s) 199, 1045, 1356
BmuI ACTGGG 1 cut(s) 772
BoxI GACNNNNGTC 1 cut(s) 1083
BpiI GAAGAC 1 cut(s) 1423
BpmI CTGGAG 2 cut(s) 840, 1014
Bpu14I TTCGAA 2 cut(s) 140, 1451
BsaBI GATNNNNATC 1 cut(s) 1002
BsaHI GRCGYC 2 cut(s) 36, 196
BsaI GGTCTC 1 cut(s) 174
BsaJI CCNNGG 3 cut(s) 239, 277, 1341
BsaXI ACNNNNNCTCC 6 cut(s) 708, 738, 1238, 1268, 1304, 1334
Bsc4I CCNNNNNNNGG 2 cut(s) 1148, 1289
Bse1I ACTGG 2 cut(s) 767, 1113
Bse21I CCTNAGG 1 cut(s) 816
Bse8I GATNNNNATC 1 cut(s) 1002
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 3 cut(s) 239, 277, 1341
BseJI GATNNNNATC 1 cut(s) 1002
BseLI CCNNNNNNNGG 2 cut(s) 1148, 1289
BseMII CTCAG 4 cut(s) 284, 621, 807, 902
BseNI ACTGG 2 cut(s) 767, 1113
BseRI GAGGAG 3 cut(s) 843, 1259, 1358
BseSI GKGCMC 2 cut(s) 298, 1198
BseXI GCAGC 3 cut(s) 472, 487, 1512
Bsh1236I CGCG 2 cut(s) 15, 1335
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 35
BsiHKAI GWGCWC 3 cut(s) 298, 771, 1198
BslFI GGGAC 1 cut(s) 1071
BslI CCNNNNNNNGG 2 cut(s) 1148, 1289
BsmAI GTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 1071
BsnI GGCC 1 cut(s) 264
Bso31I GGTCTC 1 cut(s) 174
Bsp119I TTCGAA 2 cut(s) 140, 1451
Bsp1286I GDGCHC 3 cut(s) 298, 771, 1198
Bsp143I GATC 3 cut(s) 266, 1003, 1393
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 4 cut(s) 13, 33, 217, 1443
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 4 cut(s) 283, 620, 808, 903
BspFNI CGCG 2 cut(s) 15, 1335
BspLI GGNNCC 7 cut(s) 37, 837, 1041, 1071, 1248, 1314, 1495
BspMAI CTGCAG 1 cut(s) 457
BspT104I TTCGAA 2 cut(s) 140, 1451
BspT107I GGYRCC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 174
BsrI ACTGG 2 cut(s) 767, 1113
BssECI CCNNGG 3 cut(s) 239, 277, 1341
BssMI GATC 3 cut(s) 266, 1003, 1393
BssNI GRCGYC 2 cut(s) 36, 196
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 1085, 1193
Bst6I CTCTTC 2 cut(s) 420, 630
BstACI GRCGYC 2 cut(s) 36, 196
BstAPI GCANNNNNTGC 2 cut(s) 30, 302
BstBI TTCGAA 2 cut(s) 140, 1451
BstC8I GCNNGC 1 cut(s) 1038
BstDEI CTNAG 7 cut(s) 203, 270, 607, 816, 911, 1179, 1460
BstDSI CCRYGG 1 cut(s) 239
BstENI CCTNNNNNAGG 1 cut(s) 1287
BstFNI CGCG 2 cut(s) 15, 1335
BstH2I RGCGCY 2 cut(s) 39, 1037
BstHHI GCGC 5 cut(s) 17, 38, 394, 1036, 1282
BstKTI GATC 3 cut(s) 269, 1006, 1396
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 3 cut(s) 266, 1003, 1393
BstMWI GCNNNNNNNGC 7 cut(s) 21, 30, 83, 302, 359, 400, 946
BstNI CCWGG 1 cut(s) 278
BstPAI GACNNNNGTC 1 cut(s) 1083
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 2 cut(s) 298, 1198
BstUI CGCG 2 cut(s) 15, 1335
BstV1I GCAGC 3 cut(s) 472, 487, 1512
BstV2I GAAGAC 1 cut(s) 1423
BstXI CCANNNNNNTGG 1 cut(s) 182
Bsu36I CCTNAGG 1 cut(s) 816
BsuRI GGCC 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 1185
BtsIMutI CAGTG 2 cut(s) 783, 1198
Cac8I GCNNGC 1 cut(s) 1038
CfoI GCGC 5 cut(s) 17, 38, 394, 1036, 1282
CseI GACGC 4 cut(s) 204, 1098, 1324, 1341
Csp6I GTAC 6 cut(s) 81, 226, 274, 560, 1293, 1511
CspCI CAANNNNNGTGG 2 cut(s) 886, 921
CviAII CATG 3 cut(s) 214, 240, 730
CviQI GTAC 6 cut(s) 81, 226, 274, 560, 1293, 1511
DdeI CTNAG 7 cut(s) 203, 270, 607, 816, 911, 1179, 1460
DinI GGCGCC 1 cut(s) 37
DpnI GATC 3 cut(s) 268, 1005, 1395
DpnII GATC 3 cut(s) 266, 1003, 1393
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 420, 630
EarI CTCTTC 2 cut(s) 420, 630
Eco130I CCWWGG 1 cut(s) 239
Eco31I GGTCTC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 745
Eco47III AGCGCT 1 cut(s) 1035
Eco57I CTGAAG 2 cut(s) 444, 1413
Eco81I CCTNAGG 1 cut(s) 816
EcoNI CCTNNNNNAGG 1 cut(s) 1287
EcoRII CCWGG 1 cut(s) 276
EcoRV GATATC 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 239
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 3 cut(s) 217, 243, 733
FaiI YATR 7 cut(s) 66, 215, 241, 465, 731, 1506, 1508
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FaqI GGGAC 1 cut(s) 1071
FatI CATG 3 cut(s) 213, 239, 729
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 4 cut(s) 34, 486, 501, 1501
Fsp4HI GCNGC 4 cut(s) 34, 486, 501, 1501
FspI TGCGCA 1 cut(s) 393
GlaI GCGC 5 cut(s) 16, 37, 393, 1035, 1281
GluI GCNGC 4 cut(s) 34, 486, 501, 1501
GsuI CTGGAG 2 cut(s) 840, 1014
HaeII RGCGCY 2 cut(s) 39, 1037
HaeIII GGCC 1 cut(s) 264
HgaI GACGC 4 cut(s) 204, 1098, 1324, 1341
HhaI GCGC 5 cut(s) 17, 38, 394, 1036, 1282
Hin1I GRCGYC 2 cut(s) 36, 196
Hin1II CATG 3 cut(s) 217, 243, 733
Hin6I GCGC 5 cut(s) 15, 36, 392, 1034, 1280
HinP1I GCGC 5 cut(s) 15, 36, 392, 1034, 1280
HinfI GANTC 4 cut(s) 844, 968, 1175, 1419
HphI GGTGA 9 cut(s) 524, 593, 686, 695, 701, 731, 767, 1330, 1375
Hpy166II GTNNAC 6 cut(s) 296, 727, 908, 959, 1196, 1331
Hpy188I TCNGA 4 cut(s) 610, 973, 1078, 1432
Hpy188III TCNNGA 9 cut(s) 59, 287, 336, 748, 815, 857, 921, 1007, 1213
Hpy8I GTNNAC 6 cut(s) 296, 727, 908, 959, 1196, 1331
Hpy99I CGWCG 2 cut(s) 44, 992
HpyCH4III ACNGT 2 cut(s) 1085, 1193
HpyCH4V TGCA 8 cut(s) 24, 296, 305, 455, 488, 1058, 1196, 1369
HpyF10VI GCNNNNNNNGC 7 cut(s) 21, 30, 83, 302, 359, 400, 946
HpyF3I CTNAG 7 cut(s) 203, 270, 607, 816, 911, 1179, 1460
Hsp92I GRCGYC 2 cut(s) 36, 196
Hsp92II CATG 3 cut(s) 217, 243, 733
HspAI GCGC 5 cut(s) 15, 36, 392, 1034, 1280
KasI GGCGCC 1 cut(s) 35
Kzo9I GATC 3 cut(s) 266, 1003, 1393
LmnI GCTCC 6 cut(s) 497, 766, 856, 1045, 1246, 1312
Lsp1109I GCAGC 3 cut(s) 472, 487, 1512
LweI GCATC 3 cut(s) 199, 1045, 1356
MaeIII GTNAC 3 cut(s) 43, 118, 1336
MalI GATC 3 cut(s) 268, 1005, 1395
MboI GATC 3 cut(s) 266, 1003, 1393
MhlI GDGCHC 3 cut(s) 298, 771, 1198
MluCI AATT 7 cut(s) 54, 151, 376, 777, 861, 1406, 1467
MluI ACGCGT 1 cut(s) 1333
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 1413
MmeI TCCRAC 2 cut(s) 621, 784
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 3 cut(s) 53, 864, 1410
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 575
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 2 cut(s) 15, 1335
MwoI GCNNNNNNNGC 7 cut(s) 21, 30, 83, 302, 359, 400, 946
NarI GGCGCC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 239
NdeII GATC 3 cut(s) 266, 1003, 1393
NlaIII CATG 3 cut(s) 217, 243, 733
NlaIV GGNNCC 7 cut(s) 37, 837, 1041, 1071, 1248, 1314, 1495
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 3 cut(s) 43, 118, 1336
NsbI TGCGCA 1 cut(s) 393
NspV TTCGAA 2 cut(s) 140, 1451
PcsI WCGNNNNNNNCGW 4 cut(s) 55, 128, 993, 1316
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 3 cut(s) 844, 968, 1175
PkrI GCNGC 4 cut(s) 35, 487, 502, 1502
PleI GAGTC 1 cut(s) 1413
PluTI GGCGCC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 1413
PshAI GACNNNNGTC 1 cut(s) 1083
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 7 cut(s) 37, 837, 1041, 1071, 1248, 1314, 1495
PstI CTGCAG 1 cut(s) 457
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 6 cut(s) 82, 227, 275, 561, 1294, 1512
RsaNI GTAC 6 cut(s) 81, 226, 274, 560, 1293, 1511
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 3 cut(s) 53, 864, 1410
SatI GCNGC 4 cut(s) 34, 486, 501, 1501
Sau3AI GATC 3 cut(s) 266, 1003, 1393
ScaI AGTACT 2 cut(s) 82, 1512
SchI GAGTC 1 cut(s) 1413
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 3 cut(s) 298, 771, 1198
SfaNI GCATC 3 cut(s) 199, 1045, 1356
SfcI CTRYAG 1 cut(s) 453
SfoI GGCGCC 1 cut(s) 37
SfuI TTCGAA 2 cut(s) 140, 1451
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 7 cut(s) 54, 151, 376, 777, 861, 1406, 1467
SsiI CCGC 4 cut(s) 13, 33, 217, 1443
SspDI GGCGCC 1 cut(s) 35
SspI AATATT 1 cut(s) 1456
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 2 cut(s) 1085, 1193
TaqI TCGA 6 cut(s) 58, 73, 140, 747, 1117, 1451
TasI AATT 7 cut(s) 54, 151, 376, 777, 861, 1406, 1467
TatI WGTACW 3 cut(s) 80, 225, 1510
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 3 cut(s) 844, 968, 1175
Tru1I TTAA 3 cut(s) 53, 864, 1410
Tru9I TTAA 3 cut(s) 53, 864, 1410
TscAI CASTG 2 cut(s) 790, 1198
TseFI GTSAC 3 cut(s) 43, 118, 1336
TseI GCWGC 3 cut(s) 485, 500, 1500
Tsp45I GTSAC 3 cut(s) 43, 118, 1336
TspDTI ATGAA 9 cut(s) 94, 480, 494, 606, 648, 717, 810, 903, 1239
TspGWI ACGGA 2 cut(s) 1325, 1506
TspRI CASTG 2 cut(s) 790, 1198
VneI GTGCAC 2 cut(s) 294, 1194
XagI CCTNNNNNAGG 1 cut(s) 1287
XapI RAATTY 4 cut(s) 151, 777, 1406, 1467
XmnI GAANNNNTTC 1 cut(s) 101
ZrmI AGTACT 2 cut(s) 82, 1512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.