Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001724

Physical Location & Seq

Genomic Coordinates Forward (+)

47207660 .. 47209815

Gene Structure 2156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009133

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGTGTTACATAGAAGAGAGGATCACCTCAAAAAGTTAATGAGTGAACATGATCTGTGGGATAAGACTGGACGGTCCGAGTACAGGGTCATCTTCAAGAATCGTTTTGCAGCTTTCTACCTACAAATGCAAGAAGGAGAGGAGATTTCAGATGTTCCTACAGGTTCCTGGTTCAACTTTGAGAAAGTTCAACAGTATAATAAGCAACTTGCTTTGGCGGAAACCGAAGGGAAGAGAAAACTATATGATGATGATGCCGAGGCCTTTAGCTGTGCACCTTCCAAGAAGTTGAAGACCAAAAATGATCAAAAACCTTCCATAGAAGAAGAGCCTGCATCTGCTAGTCCTATCAGTGAGGAAGAAATCAGGGCTGTTTTTGAGAAAGAACAAGCAATTTCCTTACAAGACCTTGTTGACCACTATCCAGGAAGAGTGGAATCGAATGAGGAGCTGAAGGCTTCAATAGCAGGGTTGAGGAGTATGTCTTACAAAATACTATATGTAAGAGACCGAAAGACGAAGAAACTAGTTACAATCTTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008022

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_alpha

Protein Analysis

182

Amino Acids

21.11

Weight (kDa)

6.15

Isoelectric Point (pI)

65.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12610 AT4G12610
fragaria_vesca	FvH4_2g22070 FvH4_2g22070 FvH4_2g22070 FvH4_3g01042
malus_domestica	MD05G1357300.v1.1 MD10G1331000.v1.1
prunus_persica	Prupe.4G011300_v2.0.a1 Prupe.4G011300_v2.0.a1
pyrus_communis	pycom05g32330 pycom10g28050
rosa_chinensis	RchiOBHm_Chr5g0001581 RchiOBHm_Chr6g0288941
rosa_laevigata	RLG00000009133 RLG00000012342 RLG00000012344 RLG00000030944
rosa_multiflora	Rmu_sc0003749.1_g000001 Rmu_sc0006320.1_g000007 Rmu_sc0007182.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074740 Rroxscaffold_7G00179460 Rroxscaffold_7G00179470 Rroxscaffold_7G00179490
rosa_rugosa	Rorug04G0391100 Rorug06G0199700 Rorug06G0201700
rosa_samantha	Rh2BG455300 Rh2DG465300 Rh5AG012500 Rh5BG015400 Rh5CG013500 Rh5CG313700 Rh5DG013300 Rh6AG312800 Rh6BG317400 Rh6BG319600 Rh6CG326300 Rh6DG312400
rosa_wichuraiana	Rw0G003180 Rw0G005580 Rw1G016380 Rw2G040560 Rw5G001200 Rw6G027030 Rw7G019510 Rw7G019540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	473
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	5 cut(s)	97, 175, 191, 292, 462
AhlI	ACTAGT	1 cut(s)	526
AjnI	CCWGG	2 cut(s)	167, 424
AluBI	AGCT	3 cut(s)	113, 270, 451
AluI	AGCT	3 cut(s)	113, 270, 451
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	501
Alw44I	GTGCAC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	1 cut(s)	261
ApaLI	GTGCAC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	169, 426
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	501
BcuI	ACTAGT	1 cut(s)	526
BfaI	CTAG	2 cut(s)	342, 527
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	2 cut(s)	169, 426
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	169, 426
BmsI	GCATC	2 cut(s)	244, 344
BpiI	GAAGAC	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	169, 426
BseDI	CCNNGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	3 cut(s)	155, 461, 490
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	122
BshFI	GGCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	22, 52, 304
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	30
BspQI	GCTCTTC	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	22, 52, 304
Bst2UI	CCWGG	2 cut(s)	169, 426
Bst4CI	ACNGT	2 cut(s)	75, 195
Bst6I	CTCTTC	4 cut(s)	10, 227, 321, 424
BstC8I	GCNNGC	1 cut(s)	333
BstKTI	GATC	3 cut(s)	25, 55, 307
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	3 cut(s)	22, 52, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	2 cut(s)	169, 426
BstSCI	CCNGG	2 cut(s)	167, 424
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	75
CpoI	CGGWCCG	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	82
CspI	CGGWCCG	1 cut(s)	75
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	7 cut(s)	113, 263, 270, 331, 371, 451, 458
CviKI_1	RGCY	7 cut(s)	113, 263, 270, 331, 371, 451, 458
CviQI	GTAC	1 cut(s)	82
DpnI	GATC	3 cut(s)	24, 54, 306
DpnII	GATC	3 cut(s)	22, 52, 304
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
Eam1104I	CTCTTC	4 cut(s)	10, 227, 321, 424
EarI	CTCTTC	4 cut(s)	10, 227, 321, 424
EciI	GGCGGA	1 cut(s)	233
Eco147I	AGGCCT	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	473
EcoRII	CCWGG	2 cut(s)	167, 424
FaeI	CATG	1 cut(s)	53
FaiI	YATR	9 cut(s)	12, 51, 198, 244, 246, 320, 482, 499, 501
FatI	CATG	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	342, 527
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	2 cut(s)	100, 437
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	47, 275, 415
Hpy188I	TCNGA	2 cut(s)	79, 151
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	3 cut(s)	47, 275, 415
HpyAV	CCTTC	5 cut(s)	128, 221, 288, 324, 448
HpyCH4III	ACNGT	2 cut(s)	75, 195
HpyCH4V	TGCA	4 cut(s)	110, 130, 275, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	22, 52, 304
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	2 cut(s)	244, 344
MaeI	CTAG	2 cut(s)	342, 527
MaeIII	GTNAC	2 cut(s)	6, 529
MalI	GATC	3 cut(s)	24, 54, 306
MboI	GATC	3 cut(s)	22, 52, 304
MboII	GAAGA	9 cut(s)	27, 85, 244, 304, 335, 338, 371, 441, 532
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	1 cut(s)	393
MnlI	CCTC	7 cut(s)	13, 38, 133, 253, 349, 439, 468
MseI	TTAA	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	169, 426
MvaI	CCWGG	2 cut(s)	169, 426
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeII	GATC	3 cut(s)	22, 52, 304
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	166
NmeAIII	GCCGAG	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	100, 437
PfoI	TCCNGGA	1 cut(s)	424
PkrI	GCNGC	1 cut(s)	112
Psp6I	CCWGG	2 cut(s)	167, 424
PspGI	CCWGG	2 cut(s)	167, 424
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	75
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
Rsr2I	CGGWCCG	1 cut(s)	75
RsrII	CGGWCCG	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	3 cut(s)	22, 52, 304
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	169, 426
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	9 cut(s)	30, 115, 123, 166, 272, 280, 316, 411, 453
SfaNI	GCATC	2 cut(s)	244, 344
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	75
SpeI	ACTAGT	1 cut(s)	526
Sse9I	AATT	1 cut(s)	393
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	2 cut(s)	342, 527
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	167, 424
TaaI	ACNGT	2 cut(s)	75, 195
TaqI	TCGA	1 cut(s)	440
TaqII	GACCGA	1 cut(s)	525
TasI	AATT	1 cut(s)	393
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	100, 437
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	1 cut(s)	110
TspRI	CASTG	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	75
XspI	CTAG	2 cut(s)	342, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.