pycom07g03590

hydroxyproline O-arabinosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002578
Physical Location & Seq
Forward (+)
3037353 .. 3040259
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1083 bp
ATGATTGAGAGGAAGAACATGGGACGAGCTTCATCATTAGTTCTGGTCCTTTTGGCTCTTGGGTTTTTCTTTGCTACTTATAATTTGTCAACTATGGTAATTCATTATAGGTTGGTTGGGAAATGGGTAGGTGATAACACGGATAGTGGATTACTGTCTGACCCGATTATTGAGATGCCGGAGAATGCGAAGAAGTTTAAGAATACCAAGGCACCATTCCATGTTGCGTTAACAGCCACTGATACTCCTTACAGCAAATGGCAGTGTCGCATTATGTACTATTGGTATAAGAAGAAGAAGGACTTGCCTGCATCAGAGATGGGAGGATTTACTCGAATTTTGCATTCAGGAAAACCTGACAACTTGATGGATGAGATTCCAACTATTGTGGTTGATCACATTGTCTTAAACAGACCATGGGCTTTTGTGCAATGGCTGGAAAAGGCTACTATTGAGGAAGAATATATTTTGATGGCGGAGCCTGATCACTCAATTTTTATAAATCCTCTTCCTAATTTGGCACTTGGAGGATATCCAGCAGCCTTCCCATTTTTCTACATTAAACCTTCTCAGAATGAGAAGATCATAAGAAAGTTTTATCCTGAGGAGAACGGTCCAGTCACAAAGATTGGTCCAATTGGAAATTCTCCTGTAATTATCAAGAAGGATTTGCTGGAAAAGATTGCTCCTACATGGATGAATGTTTCTTTGAGGATGAAAGAAGACACGGAGACGGATAAAGCTTTCGGATGGGTGCTAGAAATGTATGCTTATGCTGTGGCATCTGCTTTGCATGGTGTGCCGCATATTCTTCGGAAGGACTTCATGGTGCAGCCGCCATGGGATATGGAACTTCGTAAAAAGTTTATCATTCATTATACTTACGGATGTGACTACAACTTAAAGGGTGAGCTAACATATGGAAAAATTGGGGAATGGAGATTTGACAAGAAAGCATATCTACGTGGACCACCACCAAGAAACCTCCCCTTACCTCCTCCTGGGGTTCCTGAGAGTGTGGTCACCCTTGTAAAGATGGTGAATGAAGCTACTGCTAACATTCCTAATTGGGACACACAATAG

Protein Analysis

361

Amino Acids

41.24

Weight (kDa)

8.72

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HPAT PF23452 73 - 358 1.3e-119 Hydroxyproline O-arabinosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 81, 500
AccB1I GGYRCC 1 cut(s) 211
AciI CCGC 3 cut(s) 476, 803, 836
AcsI RAATTY 2 cut(s) 336, 643
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 1001
AjnI CCWGG 1 cut(s) 1000
AjuI GAANNNNNNNTTGG 4 cut(s) 200, 232, 628, 660
AluBI AGCT 4 cut(s) 29, 743, 913, 1049
AluI AGCT 4 cut(s) 29, 743, 913, 1049
Alw26I GTCTC 1 cut(s) 725
AlwNI CAGNNNCTG 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 539, 832
ApoI RAATTY 2 cut(s) 336, 643
Asp700I GAANNNNTTC 1 cut(s) 821
AspS9I GGNCC 4 cut(s) 46, 614, 632, 968
AsuHPI GGTGA 4 cut(s) 143, 920, 1015, 1051
AvaII GGWCC 4 cut(s) 46, 614, 632, 968
AxyI CCTNAGG 1 cut(s) 603
BanI GGYRCC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 729
BbvI GCAGC 2 cut(s) 551, 844
BccI CCATC 5 cut(s) 313, 361, 466, 744, 1030
BcgI CGANNNNNNTGC 2 cut(s) 794, 828
BciT130I CCWGG 1 cut(s) 1002
BclI TGATCA 2 cut(s) 394, 484
BcoDI GTCTC 1 cut(s) 725
BfaI CTAG 1 cut(s) 758
BisI GCNGC 4 cut(s) 540, 803, 833, 836
BlsI GCNGC 4 cut(s) 541, 804, 834, 837
Bme1390I CCNGG 1 cut(s) 1002
Bme18I GGWCC 4 cut(s) 46, 614, 632, 968
BmgT120I GGNCC 4 cut(s) 46, 614, 632, 968
BmiI GGNNCC 3 cut(s) 213, 480, 1008
BmrFI CCNGG 1 cut(s) 1002
BmsI GCATC 3 cut(s) 165, 320, 791
BpiI GAAGAC 1 cut(s) 729
BsaAI YACGTR 1 cut(s) 965
BsaJI CCNNGG 4 cut(s) 207, 416, 839, 1001
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 1001
Bse1I ACTGG 1 cut(s) 617
Bse21I CCTNAGG 1 cut(s) 603
Bse3DI GCAATG 1 cut(s) 437
BseBI CCWGG 1 cut(s) 1002
BseDI CCNNGG 4 cut(s) 207, 416, 839, 1001
BseGI GGATG 5 cut(s) 376, 702, 720, 755, 893
BseLI CCNNNNNNNGG 1 cut(s) 1001
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 3 cut(s) 584, 594, 1002
BseNI ACTGG 1 cut(s) 617
BseRI GAGGAG 2 cut(s) 620, 987
BseXI GCAGC 2 cut(s) 551, 844
BsgI GTGCAG 1 cut(s) 851
BshNI GGYRCC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 1001
BsmAI GTCTC 1 cut(s) 725
BsmBI CGTCTC 1 cut(s) 725
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 2 cut(s) 190, 343
Bsp143I GATC 3 cut(s) 394, 484, 582
Bsp19I CCATGG 2 cut(s) 416, 839
BspACI CCGC 3 cut(s) 476, 803, 836
BspCNI CTCAG 3 cut(s) 583, 595, 1003
BspLI GGNNCC 3 cut(s) 213, 480, 1008
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 437
BsrI ACTGG 1 cut(s) 617
BssECI CCNNGG 4 cut(s) 207, 416, 839, 1001
BssMI GATC 3 cut(s) 394, 484, 582
BssT1I CCWWGG 3 cut(s) 207, 416, 839
Bst2UI CCWGG 1 cut(s) 1002
Bst4CI ACNGT 2 cut(s) 156, 614
Bst6I CTCTTC 1 cut(s) 513
BstAPI GCANNNNNTGC 1 cut(s) 799
BstBAI YACGTR 1 cut(s) 965
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 3 cut(s) 570, 603, 1011
BstDSI CCRYGG 2 cut(s) 416, 839
BstEII GGTNACC 1 cut(s) 1021
BstF5I GGATG 5 cut(s) 376, 702, 720, 755, 893
BstKTI GATC 3 cut(s) 397, 487, 585
BstMAI GTCTC 1 cut(s) 725
BstMBI GATC 3 cut(s) 394, 484, 582
BstMWI GCNNNNNNNGC 2 cut(s) 233, 799
BstNI CCWGG 1 cut(s) 1002
BstPI GGTNACC 1 cut(s) 1021
BstSCI CCNGG 1 cut(s) 1000
BstV1I GCAGC 2 cut(s) 551, 844
BstV2I GAAGAC 1 cut(s) 729
Bsu36I CCTNAGG 1 cut(s) 603
BtgI CCRYGG 2 cut(s) 416, 839
BtsCI GGATG 5 cut(s) 376, 702, 720, 755, 893
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 237, 269
Cac8I GCNNGC 1 cut(s) 309
CaiI CAGNNNCTG 1 cut(s) 239
Cfr13I GGNCC 4 cut(s) 46, 614, 632, 968
Csp6I GTAC 1 cut(s) 277
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviAII CATG 7 cut(s) 19, 221, 417, 693, 794, 826, 840
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 3 cut(s) 570, 603, 1011
DpnI GATC 3 cut(s) 396, 486, 584
DpnII GATC 3 cut(s) 394, 484, 582
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
EciI GGCGGA 1 cut(s) 491
Eco130I CCWWGG 3 cut(s) 207, 416, 839
Eco32I GATATC 1 cut(s) 533
Eco47I GGWCC 4 cut(s) 46, 614, 632, 968
Eco81I CCTNAGG 1 cut(s) 603
Eco91I GGTNACC 1 cut(s) 1021
EcoO65I GGTNACC 1 cut(s) 1021
EcoRII CCWGG 1 cut(s) 1000
EcoRV GATATC 1 cut(s) 533
EcoT14I CCWWGG 3 cut(s) 207, 416, 839
ErhI CCWWGG 3 cut(s) 207, 416, 839
Esp3I CGTCTC 1 cut(s) 725
FaeI CATG 7 cut(s) 22, 224, 420, 696, 797, 829, 843
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 1 cut(s) 36
FatI CATG 7 cut(s) 18, 220, 416, 692, 793, 825, 839
FauNDI CATATG 1 cut(s) 919
FbaI TGATCA 2 cut(s) 394, 484
Fnu4HI GCNGC 4 cut(s) 540, 803, 833, 836
FokI GGATG 5 cut(s) 383, 709, 727, 762, 900
Fsp4HI GCNGC 4 cut(s) 540, 803, 833, 836
FspBI CTAG 1 cut(s) 758
GluI GCNGC 4 cut(s) 540, 803, 833, 836
HapII CCGG 1 cut(s) 179
Hin1II CATG 7 cut(s) 22, 224, 420, 696, 797, 829, 843
HincII GTYRAC 2 cut(s) 90, 231
HindII GTYRAC 2 cut(s) 90, 231
HindIII AAGCTT 1 cut(s) 741
HinfI GANTC 1 cut(s) 376
HpaI GTTAAC 1 cut(s) 231
HpaII CCGG 1 cut(s) 179
HphI GGTGA 4 cut(s) 143, 920, 1015, 1051
Hpy166II GTNNAC 3 cut(s) 90, 231, 968
Hpy188I TCNGA 5 cut(s) 160, 316, 573, 749, 816
Hpy188III TCNNGA 4 cut(s) 348, 602, 661, 1010
Hpy8I GTNNAC 3 cut(s) 90, 231, 968
HpyAV CCTTC 5 cut(s) 292, 553, 576, 658, 811
HpyCH4III ACNGT 2 cut(s) 156, 614
HpyCH4IV ACGT 1 cut(s) 964
HpyCH4V TGCA 5 cut(s) 311, 343, 430, 793, 832
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 799
HpyF3I CTNAG 3 cut(s) 570, 603, 1011
HpySE526I ACGT 1 cut(s) 964
Hsp92II CATG 7 cut(s) 22, 224, 420, 696, 797, 829, 843
Ksp22I TGATCA 2 cut(s) 394, 484
KspAI GTTAAC 1 cut(s) 231
Kzo9I GATC 3 cut(s) 394, 484, 582
LmnI GCTCC 2 cut(s) 478, 691
Lsp1109I GCAGC 2 cut(s) 551, 844
LweI GCATC 3 cut(s) 165, 320, 791
MaeI CTAG 1 cut(s) 758
MaeII ACGT 1 cut(s) 964
MaeIII GTNAC 3 cut(s) 619, 890, 1021
MalI GATC 3 cut(s) 396, 486, 584
MboI GATC 3 cut(s) 394, 484, 582
MboII GAAGA 9 cut(s) 25, 202, 304, 307, 470, 500, 592, 734, 803
MfeI CAATTG 1 cut(s) 636
MmeI TCCRAC 1 cut(s) 404
MroXI GAANNNNTTC 1 cut(s) 821
MseI TTAA 5 cut(s) 198, 230, 407, 561, 902
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 1002
MunI CAATTG 1 cut(s) 636
Mva1269I GAATGC 2 cut(s) 190, 343
MvaI CCWGG 1 cut(s) 1002
MwoI GCNNNNNNNGC 2 cut(s) 233, 799
NcoI CCATGG 2 cut(s) 416, 839
NdeI CATATG 1 cut(s) 919
NdeII GATC 3 cut(s) 394, 484, 582
NlaIII CATG 7 cut(s) 22, 224, 420, 696, 797, 829, 843
NlaIV GGNNCC 3 cut(s) 213, 480, 1008
NmuCI GTSAC 3 cut(s) 619, 890, 1021
PctI GAATGC 2 cut(s) 190, 343
PdmI GAANNNNTTC 1 cut(s) 821
PfeI GAWTC 1 cut(s) 376
PkrI GCNGC 4 cut(s) 541, 804, 834, 837
Ppu21I YACGTR 1 cut(s) 965
PsiI TTATAA 2 cut(s) 81, 500
Psp6I CCWGG 1 cut(s) 1000
PspEI GGTNACC 1 cut(s) 1021
PspGI CCWGG 1 cut(s) 1000
PspN4I GGNNCC 3 cut(s) 213, 480, 1008
PspPI GGNCC 4 cut(s) 46, 614, 632, 968
PstNI CAGNNNCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SaqAI TTAA 5 cut(s) 198, 230, 407, 561, 902
SatI GCNGC 4 cut(s) 540, 803, 833, 836
Sau3AI GATC 3 cut(s) 394, 484, 582
Sau96I GGNCC 4 cut(s) 46, 614, 632, 968
ScrFI CCNGG 1 cut(s) 1002
SfaNI GCATC 3 cut(s) 165, 320, 791
SinI GGWCC 4 cut(s) 46, 614, 632, 968
SsiI CCGC 3 cut(s) 476, 803, 836
SspMI CTAG 1 cut(s) 758
StyD4I CCNGG 1 cut(s) 1000
StyI CCWWGG 3 cut(s) 207, 416, 839
TaaI ACNGT 2 cut(s) 156, 614
TaiI ACGT 1 cut(s) 967
TaqI TCGA 1 cut(s) 334
TatI WGTACW 1 cut(s) 276
TauI GCSGC 2 cut(s) 805, 838
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 5 cut(s) 198, 230, 407, 561, 902
Tru9I TTAA 5 cut(s) 198, 230, 407, 561, 902
TscAI CASTG 2 cut(s) 244, 269
TseFI GTSAC 3 cut(s) 619, 890, 1021
TseI GCWGC 2 cut(s) 539, 832
Tsp45I GTSAC 3 cut(s) 619, 890, 1021
TspDTI ATGAA 7 cut(s) 21, 92, 713, 731, 814, 863, 1059
TspGWI ACGGA 4 cut(s) 155, 743, 749, 900
TspRI CASTG 2 cut(s) 244, 269
VpaK11BI GGWCC 4 cut(s) 46, 614, 632, 968
XapI RAATTY 2 cut(s) 336, 643
XmnI GAANNNNTTC 1 cut(s) 821
XspI CTAG 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.