pycom07g22830

Jagunal, ER re-organisation during oogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0005333
Physical Location & Seq
Forward (+)
24009811 .. 24011806
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGAAAACAATAAATTACAGAGTGGGCCCCACTTCCAAAGGTTTTTTTTTTTTTTTTTTTTTTCGGGACATCGAAAGCTCAAAACCCCTGAGTTCGAGATCGACGACGAAGAAGACGAAGATGCAGCAAAGAAAACCAGCGTCAGGAAGGCCTACTGGAACAGATGGCTCAGATTTCAACTACCGCATGGTGGTTGACTCTCGGTATCAGAAGGTAGCTAAAGGGAAGTCTCGTCTGTACTCTCTTATTCTAACTCAGGCCGTCATTCAATTGACAGGAGTCCTTTATGCTTTTCTGTTTACATCAGATGGGGAAGGTCCAAATGTGATTGCCATCTCATCTGTTGCTATTGGTTCTATTTCTTTGATAATCGGGGAGTTGGGTCGAAGGCGCAGCCGAGTGTCTTTGTTGAAAGTGTACATGGTTGCATCATCTATTGGAATACTTCTCTCCATTGCTTGTGTTGCTAAGGGAAGTTTAACACTAGCGGTTTTGCAAAATTCAAGTAACTGGGAAACAAAGAAATTTGAACTTGTTGAGGCCACTCGCACTGTAATTGCATTCCTGGTTCAAATATTTGCAATCAGCACAACCACTTCTCTCATCGGTAACATGTCTCCTCCGAAAAGAGCCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jagunal

Protein Analysis

213

Amino Acids

23.24

Weight (kDa)

10.46

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jagunal PF07086 50 - 92 1.4e-06 Jagunal, ER re-organisation during oogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 184, 488
AcsI RAATTY 2 cut(s) 499, 524
AfaI GTAC 2 cut(s) 239, 419
AfiI CCNNNNNNNGG 2 cut(s) 143, 190
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 6 cut(s) 178, 269, 412, 504, 530, 572
AjnI CCWGG 1 cut(s) 564
AluBI AGCT 2 cut(s) 78, 218
AluI AGCT 2 cut(s) 78, 218
Alw26I GTCTC 2 cut(s) 234, 621
AoxI GGCC 4 cut(s) 25, 149, 258, 540
ApaI GGGCCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 124, 393
ApoI RAATTY 2 cut(s) 499, 524
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 3 cut(s) 25, 26, 317
AvaII GGWCC 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 136, 405
BccI CCATC 3 cut(s) 158, 302, 341
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 566
BcoDI GTCTC 2 cut(s) 234, 621
BfaI CTAG 1 cut(s) 485
BisI GCNGC 2 cut(s) 125, 394
BlsI GCNGC 2 cut(s) 126, 395
Bme1390I CCNGG 1 cut(s) 566
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 3 cut(s) 25, 26, 317
BmiI GGNNCC 2 cut(s) 27, 28
BmrFI CCNGG 1 cut(s) 566
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 2 cut(s) 111, 437
BmuI ACTGGG 1 cut(s) 520
BoxI GACNNNNGTC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 468
BsaBI GATNNNNATC 1 cut(s) 332
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 190
Bse1I ACTGG 2 cut(s) 160, 515
Bse3DI GCAATG 1 cut(s) 453
Bse8I GATNNNNATC 1 cut(s) 332
BseBI CCWGG 1 cut(s) 566
BseJI GATNNNNATC 1 cut(s) 332
BseLI CCNNNNNNNGG 2 cut(s) 143, 190
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 3 cut(s) 80, 183, 269
BseNI ACTGG 2 cut(s) 160, 515
BseRI GAGGAG 1 cut(s) 609
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 2 cut(s) 136, 405
BshFI GGCC 4 cut(s) 27, 151, 260, 542
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 143, 190
BsmAI GTCTC 2 cut(s) 234, 621
BsmFI GGGAC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 560
BsnI GGCC 4 cut(s) 27, 151, 260, 542
Bsp120I GGGCCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 29
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 1 cut(s) 98
BspACI CCGC 2 cut(s) 184, 488
BspANI GGCC 4 cut(s) 27, 151, 260, 542
BspCNI CTCAG 3 cut(s) 81, 182, 268
BspLI GGNNCC 2 cut(s) 27, 28
BsrDI GCAATG 1 cut(s) 453
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 2 cut(s) 160, 515
BssMI GATC 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 1 cut(s) 553
BstAUI TGTACA 1 cut(s) 417
BstDEI CTNAG 4 cut(s) 89, 169, 255, 468
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 2 cut(s) 234, 621
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 1 cut(s) 566
BstNSI RCATGY 1 cut(s) 616
BstPAI GACNNNNGTC 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 136, 405
BstV2I GAAGAC 1 cut(s) 119
BsuRI GGCC 4 cut(s) 27, 151, 260, 542
BtsIMutI CAGTG 1 cut(s) 549
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 3 cut(s) 25, 26, 317
CseI GACGC 1 cut(s) 129
Csp6I GTAC 2 cut(s) 238, 418
CviAII CATG 3 cut(s) 187, 421, 613
CviJI RGCY 9 cut(s) 27, 78, 151, 168, 218, 260, 396, 542, 632
CviKI_1 RGCY 9 cut(s) 27, 78, 151, 168, 218, 260, 396, 542, 632
CviQI GTAC 2 cut(s) 238, 418
DdeI CTNAG 4 cut(s) 89, 169, 255, 468
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
Eco147I AGGCCT 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 29
FaeI CATG 3 cut(s) 190, 424, 616
FaiI YATR 4 cut(s) 188, 288, 422, 614
FaqI GGGAC 1 cut(s) 80
FatI CATG 3 cut(s) 186, 420, 612
Fnu4HI GCNGC 2 cut(s) 125, 394
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 125, 394
FspBI CTAG 1 cut(s) 485
GlaI GCGC 1 cut(s) 392
GluI GCNGC 2 cut(s) 125, 394
HaeIII GGCC 4 cut(s) 27, 151, 260, 542
HgaI GACGC 1 cut(s) 129
HhaI GCGC 1 cut(s) 393
Hin1II CATG 3 cut(s) 190, 424, 616
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 2 cut(s) 197, 279
Hpy166II GTNNAC 3 cut(s) 196, 300, 418
Hpy188I TCNGA 4 cut(s) 172, 210, 307, 624
Hpy188III TCNNGA 3 cut(s) 65, 96, 144
Hpy8I GTNNAC 3 cut(s) 196, 300, 418
Hpy99I CGWCG 2 cut(s) 106, 109
HpyAV CCTTC 4 cut(s) 141, 205, 308, 381
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4V TGCA 5 cut(s) 124, 428, 496, 560, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 4 cut(s) 89, 169, 255, 468
Hsp92II CATG 3 cut(s) 190, 424, 616
HspAI GCGC 1 cut(s) 391
Kzo9I GATC 1 cut(s) 98
LpnPI CCDG 9 cut(s) 101, 129, 141, 150, 242, 261, 496, 551, 578
Lsp1109I GCAGC 2 cut(s) 136, 405
LweI GCATC 2 cut(s) 111, 437
MaeI CTAG 1 cut(s) 485
MaeIII GTNAC 2 cut(s) 506, 608
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 3 cut(s) 121, 124, 130
MfeI CAATTG 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 5 cut(s) 13, 269, 499, 524, 555
MlyI GAGTC 2 cut(s) 191, 288
MnlI CCTC 2 cut(s) 532, 630
MseI TTAA 1 cut(s) 479
MspR9I CCNGG 1 cut(s) 566
MunI CAATTG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 1 cut(s) 464
NdeII GATC 1 cut(s) 98
NlaIII CATG 3 cut(s) 190, 424, 616
NlaIV GGNNCC 2 cut(s) 27, 28
NmeAIII GCCGAG 1 cut(s) 422
NspI RCATGY 1 cut(s) 616
PceI AGGCCT 1 cut(s) 151
PciI ACATGT 1 cut(s) 612
PcsI WCGNNNNNNNCGW 2 cut(s) 101, 113
PctI GAATGC 1 cut(s) 560
PkrI GCNGC 2 cut(s) 126, 395
PleI GAGTC 2 cut(s) 191, 287
PpsI GAGTC 2 cut(s) 191, 287
PscI ACATGT 1 cut(s) 612
PshAI GACNNNNGTC 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 2 cut(s) 27, 28
PspOMI GGGCCC 1 cut(s) 25
PspPI GGNCC 3 cut(s) 25, 26, 317
RsaI GTAC 2 cut(s) 239, 419
RsaNI GTAC 2 cut(s) 238, 418
SaqAI TTAA 1 cut(s) 479
SatI GCNGC 2 cut(s) 125, 394
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 3 cut(s) 25, 26, 317
SchI GAGTC 2 cut(s) 191, 288
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 1 cut(s) 29
SetI ASST 5 cut(s) 43, 80, 216, 220, 319
SfaNI GCATC 2 cut(s) 111, 437
SinI GGWCC 1 cut(s) 317
Sse9I AATT 5 cut(s) 13, 269, 499, 524, 555
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 2 cut(s) 184, 488
SspI AATATT 1 cut(s) 576
SspMI CTAG 1 cut(s) 485
StuI AGGCCT 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 564
TaaI ACNGT 1 cut(s) 553
TaqI TCGA 4 cut(s) 72, 95, 101, 385
TasI AATT 5 cut(s) 13, 269, 499, 524, 555
TatI WGTACW 2 cut(s) 237, 417
Tru1I TTAA 1 cut(s) 479
Tru9I TTAA 1 cut(s) 479
TscAI CASTG 1 cut(s) 556
TseI GCWGC 2 cut(s) 124, 393
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 2 cut(s) 499, 524
XceI RCATGY 1 cut(s) 616
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.