Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003616

Physical Location & Seq

Genomic Coordinates Reverse (-)

4001341 .. 4002168

Gene Structure 828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGACGGTGCTAAAGCAGTGAACATGGCTGACCTTGAATATGCAAAAGACAAGATTATGATGGGAAGTGAACGCAAGTCGGCTGTTATATCTGATGAGTCGAGAAAGCTAACAGCTTTTCATGAGGGTGGCCATGCACTTGTAGCTATCCACACCAATGGTGCTCATCCAGTTCACAAGGCAACAATAGTTCCTAGGGGTATGTCGCTTGGCATGGTTGCCCAGCTACCTGAAAAGGACGAGACAAGTGTCTCCCGGAAACAGATGCTTGCACGGCTCGACGTTTGCATGGGGGGGCGTGTTGCAGAAGAGCTCATCTTTGGAGAAAGTGAAGTTACTTCCGGTGCATCAGATGATCTGCGGCAAGCTACTTCGCTTGCTAGAGCAATGGTTACAAAGTATGGTATGAGCAAACAAGTTGGGCTCGTCAGTCACAATTACGACGACAATGGTAAGAGCATGAGCACAGAAACTAGGCTGCTCATTGAAGAAGAAGTGAAGAACCTCTTGGAAAGGGCATACAACAATGCCAAAACCATCCTCACCGAACACAGCAAGGAACTCTACGCCCTCGCTAATGCTTTACTAGAGGAGGAAACACTAACCGGAACTCAGATCAAGTCCTTGCTCGCGCAAGTAAACTCCCAGCAACAACAGCAGCAGCAACCGCACCAGCAAGTAGTTGCAGCAAAGAGTAACTCGCAGTCTAAGCCAGTGCCACCCTCCACACCCAACGCGGCTGCATCTGCTGCTGCTGCTGCAGCCGCAGCTGCAGCTGCCGCAACTGCTGCGGCCAAGTCAACAGGCATTGCTCCTGCCGGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009888 GO:0009941 GO:0010073 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

276

Amino Acids

29.02

Weight (kDa)

6.46

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	29 - 209	6.6e-68	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26140
fragaria_vesca	FvH4_1g07720 FvH4_2g31730 FvH4_2g31730
malus_domestica	MD08G1063300.v1.1 MD15G1058100.v1.1 MD15G1058500.v1.1
prunus_persica	Prupe.1G410800_v2.0.a1
pyrus_communis	pycom08g05200 pycom15g05470 pycom15g05500
rosa_chinensis	RchiOBHm_Chr2g0093601 RchiOBHm_Chr6g0311091
rosa_laevigata	RLG00000010436 RLG00000016420
rosa_multiflora	Rmu_co8327861.1_g000001 Rmu_co8491229.1_g000001 Rmu_sc0002126.1_g000022 Rmu_sc0008967.1_g000002 Rmu_sc0012235.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147960 Rroxscaffold_7G00158030
rosa_rugosa	Rorug02G0037800 Rorug02G0037800 Rorug06G0385300 Rorug06G0385400
rosa_samantha	Rh2AG084300 Rh2BG084900 Rh2CG087200 Rh2DG082900 Rh6AG499400 Rh6BG509900 Rh6CG515700 Rh6DG502300
rosa_wichuraiana	Rw6G043500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	632, 737
AciI	CCGC	6 cut(s)	361, 668, 737, 765, 780, 791
AcoI	YGGCCR	2 cut(s)	130, 792
AgsI	TTSAA	2 cut(s)	38, 488
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	8 cut(s)	109, 116, 146, 226, 313, 368, 770, 776
AluI	AGCT	8 cut(s)	109, 116, 146, 226, 313, 368, 770, 776
Alw21I	GWGCWC	3 cut(s)	166, 315, 467
Alw26I	GTCTC	2 cut(s)	236, 256
AoxI	GGCC	2 cut(s)	130, 792
AspA2I	CCTAGG	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	634
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	535
AvrII	CCTAGG	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	132
BanII	GRGCYC	2 cut(s)	315, 426
Bbv12I	GWGCWC	3 cut(s)	166, 315, 467
BccI	CCATC	2 cut(s)	55, 545
BceAI	ACGGC	1 cut(s)	290
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	236, 256
BfaI	CTAG	4 cut(s)	195, 381, 474, 587
BfmI	CTRYAG	2 cut(s)	759, 771
BlnI	CCTAGG	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	3 cut(s)	255, 356, 752
BoxI	GACNNNNGTC	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	194
BsaWI	WCCGGW	2 cut(s)	341, 605
Bse1I	ACTGG	2 cut(s)	170, 713
Bse3DI	GCAATG	2 cut(s)	393, 807
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	2 cut(s)	166, 537
BseMI	GCAATG	2 cut(s)	393, 807
BseMII	CTCAG	1 cut(s)	626
BseNI	ACTGG	2 cut(s)	170, 713
BseRI	GAGGAG	1 cut(s)	605
BseYI	CCCAGC	2 cut(s)	222, 645
Bsh1236I	CGCG	2 cut(s)	632, 737
BshFI	GGCC	2 cut(s)	132, 794
BsiHKAI	GWGCWC	3 cut(s)	166, 315, 467
BsiSI	CCGG	4 cut(s)	256, 342, 606, 819
BsmAI	GTCTC	2 cut(s)	236, 256
BsnI	GGCC	2 cut(s)	132, 794
Bsp1286I	GDGCHC	4 cut(s)	166, 315, 426, 467
Bsp143I	GATC	3 cut(s)	355, 615, 821
BspACI	CCGC	6 cut(s)	361, 668, 737, 765, 780, 791
BspANI	GGCC	2 cut(s)	132, 794
BspCNI	CTCAG	1 cut(s)	625
BspFNI	CGCG	2 cut(s)	632, 737
BspHI	TCATGA	1 cut(s)	121
BspMAI	CTGCAG	2 cut(s)	763, 775
BspQI	GCTCTTC	1 cut(s)	303
BsrDI	GCAATG	2 cut(s)	393, 807
BsrI	ACTGG	2 cut(s)	170, 713
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	3 cut(s)	355, 615, 821
BssT1I	CCWWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	303
BstAPI	GCANNNNNTGC	2 cut(s)	749, 788
BstC8I	GCNNGC	4 cut(s)	270, 366, 378, 630
BstDEI	CTNAG	3 cut(s)	612, 708, 825
BstF5I	GGATG	2 cut(s)	166, 537
BstFNI	CGCG	2 cut(s)	632, 737
BstHHI	GCGC	1 cut(s)	634
BstKTI	GATC	3 cut(s)	358, 618, 824
BstMAI	GTCTC	2 cut(s)	236, 256
BstMBI	GATC	3 cut(s)	355, 615, 821
BstPAI	GACNNNNGTC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	2 cut(s)	759, 771
BstUI	CGCG	2 cut(s)	632, 737
BstX2I	RGATCY	1 cut(s)	821
BstXI	CCANNNNNNTGG	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	821
BsuRI	GGCC	2 cut(s)	132, 794
BtsCI	GGATG	2 cut(s)	166, 537
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 720
Cac8I	GCNNGC	4 cut(s)	270, 366, 378, 630
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	634
CviAII	CATG	6 cut(s)	25, 122, 134, 214, 289, 460
DdeI	CTNAG	3 cut(s)	612, 708, 825
DpnI	GATC	3 cut(s)	357, 617, 823
DpnII	GATC	3 cut(s)	355, 615, 821
EaeI	YGGCCR	2 cut(s)	130, 792
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	194
Eco24I	GRGCYC	2 cut(s)	315, 426
Eco53kI	GAGCTC	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	2 cut(s)	315, 426
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	6 cut(s)	28, 125, 137, 217, 292, 463
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	6 cut(s)	24, 121, 133, 213, 288, 459
FokI	GGATG	2 cut(s)	153, 524
FriOI	GRGCYC	2 cut(s)	315, 426
FspBI	CTAG	4 cut(s)	195, 381, 474, 587
GlaI	GCGC	1 cut(s)	633
GsaI	CCCAGC	2 cut(s)	226, 649
HaeIII	GGCC	2 cut(s)	132, 794
HapII	CCGG	4 cut(s)	256, 342, 606, 819
HhaI	GCGC	1 cut(s)	634
Hin1II	CATG	6 cut(s)	28, 125, 137, 217, 292, 463
Hin6I	GCGC	1 cut(s)	632
HinP1I	GCGC	1 cut(s)	632
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	4 cut(s)	256, 342, 606, 819
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	5 cut(s)	22, 71, 175, 640, 801
Hpy188I	TCNGA	3 cut(s)	94, 352, 615
Hpy188III	TCNNGA	2 cut(s)	102, 122
Hpy8I	GTNNAC	5 cut(s)	22, 71, 175, 640, 801
Hpy99I	CGWCG	2 cut(s)	284, 446
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	282
HpyF3I	CTNAG	3 cut(s)	612, 708, 825
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	6 cut(s)	28, 125, 137, 217, 292, 463
HspAI	GCGC	1 cut(s)	632
Kzo9I	GATC	3 cut(s)	355, 615, 821
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	817
LweI	GCATC	3 cut(s)	255, 356, 752
MaeI	CTAG	4 cut(s)	195, 381, 474, 587
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	4 cut(s)	334, 391, 431, 695
MalI	GATC	3 cut(s)	357, 617, 823
MboI	GATC	3 cut(s)	355, 615, 821
MboII	GAAGA	4 cut(s)	320, 500, 503, 511
MflI	RGATCY	1 cut(s)	821
MhlI	GDGCHC	4 cut(s)	166, 315, 426, 467
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	1 cut(s)	436
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	7 cut(s)	118, 515, 551, 581, 583, 586, 733
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	126, 156
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	2 cut(s)	770, 776
MspI	CCGG	4 cut(s)	256, 342, 606, 819
MspR9I	CCNGG	1 cut(s)	256
MvnI	CGCG	2 cut(s)	632, 737
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	3 cut(s)	355, 615, 821
NlaIII	CATG	6 cut(s)	28, 125, 137, 217, 292, 463
NmuCI	GTSAC	1 cut(s)	431
PagI	TCATGA	1 cut(s)	121
PciSI	GCTCTTC	1 cut(s)	303
PfoI	TCCNGGA	1 cut(s)	254
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PshAI	GACNNNNGTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	315
PspFI	CCCAGC	2 cut(s)	222, 645
PstI	CTGCAG	2 cut(s)	763, 775
PsuI	RGATCY	1 cut(s)	821
PvuII	CAGCTG	2 cut(s)	770, 776
RseI	CAYNNNNRTG	2 cut(s)	126, 156
SacI	GAGCTC	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	303
Sau3AI	GATC	3 cut(s)	355, 615, 821
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	4 cut(s)	166, 315, 426, 467
SfaNI	GCATC	3 cut(s)	255, 356, 752
SfcI	CTRYAG	2 cut(s)	759, 771
SmiMI	CAYNNNNRTG	2 cut(s)	126, 156
Sse9I	AATT	1 cut(s)	436
SsiI	CCGC	6 cut(s)	361, 668, 737, 765, 780, 791
SspMI	CTAG	4 cut(s)	195, 381, 474, 587
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	101, 279
TasI	AATT	1 cut(s)	436
TauI	GCSGC	5 cut(s)	364, 740, 767, 782, 794
TscAI	CASTG	2 cut(s)	24, 720
TseFI	GTSAC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	24, 720
XmaJI	CCTAGG	1 cut(s)	194
XspI	CTAG	4 cut(s)	195, 381, 474, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.