Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008967.1

Orthogroup ID

OG0003616

Physical Location & Seq

Genomic Coordinates Reverse (-)

7201 .. 9173

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008967.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggccctgagacgcctgctgactcaggtatctaggcatcgatcagagttgggacagctgaaacaagttgtttctaggacatattttccggtcaacagggttgcaggaggtgctggagggaatacaatttttaatactcaagagaggtgtcagtcaagctatgtgcgcaatttggctcgcagaggacgtgatgttgatgaagctaatgaacttgcctatctaaaagaactgtccatgcgaaatgaccctgaagaagtgataagattatttgaaagtcaaccatcattgcattccaactcttcagcactttcagaatatgtgaaagcactggtaaaagttggcaggctggatgagagtgagttactgaagacattgcagagaggcgtatccaactctgcaagggaggatgacagcatgggtggcttctcagttcttaggaacgttgggaagtctacaaaagatggtgttcttggaactgcaagtgcacctattcatatggtggctagagaaggaggtcattttaaagagcagctgtggcgtacggttcgcacaattgcactagcctttcttttgatatctggcgtaggagcactcattgaggatagaggaataagcaaaggtcttaccatctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009888 GO:0009941 GO:0010073 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

211

Amino Acids

23.24

Weight (kDa)

9.8

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26140
fragaria_vesca	FvH4_1g07720 FvH4_2g31730 FvH4_2g31730
malus_domestica	MD08G1063300.v1.1 MD15G1058100.v1.1 MD15G1058500.v1.1
prunus_persica	Prupe.1G410800_v2.0.a1
pyrus_communis	pycom08g05200 pycom15g05470 pycom15g05500
rosa_chinensis	RchiOBHm_Chr2g0093601 RchiOBHm_Chr6g0311091
rosa_laevigata	RLG00000010436 RLG00000016420
rosa_multiflora	Rmu_co8327861.1_g000001 Rmu_co8491229.1_g000001 Rmu_sc0002126.1_g000022 Rmu_sc0008967.1_g000002 Rmu_sc0012235.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147960 Rroxscaffold_7G00158030
rosa_rugosa	Rorug02G0037800 Rorug02G0037800 Rorug06G0385300 Rorug06G0385400
rosa_samantha	Rh2AG084300 Rh2BG084900 Rh2CG087200 Rh2DG082900 Rh6AG499400 Rh6BG509900 Rh6CG515700 Rh6DG502300
rosa_wichuraiana	Rw6G043500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	452
AclI	AACGTT	1 cut(s)	441
AcuI	CTGAAG	3 cut(s)	270, 285, 386
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	1 cut(s)	541
AgsI	TTSAA	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	188
AluBI	AGCT	4 cut(s)	58, 159, 203, 532
AluI	AGCT	4 cut(s)	58, 159, 203, 532
Alw21I	GWGCWC	2 cut(s)	487, 592
Alw26I	GTCTC	1 cut(s)	4
Alw44I	GTGCAC	1 cut(s)	483
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	483
ApeKI	GCWGC	1 cut(s)	529
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	487
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	2 cut(s)	487, 592
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	3 cut(s)	289, 455, 635
BciVI	GTATCC	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	4 cut(s)	33, 75, 504, 560
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	1 cut(s)	530
BlsI	GCNGC	1 cut(s)	531
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	13
BsaWI	WCCGGW	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	2 cut(s)	284, 371
BseCI	ATCGAT	1 cut(s)	40
BseGI	GGATG	2 cut(s)	355, 412
BseMI	GCAATG	2 cut(s)	284, 371
BseMII	CTCAG	2 cut(s)	38, 441
BseNI	ACTGG	1 cut(s)	333
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	541
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	40
BsiHKAI	GWGCWC	2 cut(s)	487, 592
BsiSI	CCGG	1 cut(s)	89
BsiWI	CGTACG	1 cut(s)	539
BslFI	GGGAC	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	4
BsmBI	CGTCTC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	487, 592
Bsp143I	GATC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	37, 440
BspDI	ATCGAT	1 cut(s)	40
BsrDI	GCAATG	2 cut(s)	284, 371
BsrI	ACTGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	41
BssNI	GRCGYC	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	231, 544
Bst6I	CTCTTC	1 cut(s)	304
BstACI	GRCGYC	1 cut(s)	13
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	17, 178, 344
BstDEI	CTNAG	5 cut(s)	8, 24, 427, 434, 633
BstF5I	GGATG	2 cut(s)	355, 412
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 165, 420, 535
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	374
Bsu15I	ATCGAT	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	40
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	355, 412
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	3 cut(s)	17, 178, 344
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	40
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	2 cut(s)	235, 415
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	5 cut(s)	8, 24, 427, 434, 633
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
DraI	TTTAAA	1 cut(s)	523
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	576
Eco57I	CTGAAG	3 cut(s)	270, 285, 386
EcoRV	GATATC	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	4
FaeI	CATG	2 cut(s)	238, 418
FaiI	YATR	7 cut(s)	82, 162, 236, 318, 416, 495, 497
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	234, 414
FauNDI	CATATG	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	452
Fnu4HI	GCNGC	1 cut(s)	530
FokI	GGATG	2 cut(s)	362, 419
Fsp4HI	GCNGC	1 cut(s)	530
FspBI	CTAG	4 cut(s)	33, 75, 504, 560
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	530
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	89
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	238, 418
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	2 cut(s)	94, 278
HindII	GTYRAC	2 cut(s)	94, 278
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	89
Hpy166II	GTNNAC	4 cut(s)	94, 278, 453, 485
Hpy188I	TCNGA	2 cut(s)	46, 313
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	4 cut(s)	94, 278, 453, 485
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	2 cut(s)	231, 544
HpyCH4IV	ACGT	2 cut(s)	187, 441
HpyCH4V	TGCA	7 cut(s)	104, 289, 376, 398, 479, 485, 557
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 165, 420, 535
HpyF3I	CTNAG	5 cut(s)	8, 24, 427, 434, 633
HpySE526I	ACGT	2 cut(s)	187, 441
Hsp92I	GRCGYC	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	238, 418
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	587
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	4 cut(s)	33, 75, 504, 560
MaeII	ACGT	2 cut(s)	187, 441
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	3 cut(s)	263, 291, 379
MfeI	CAATTG	1 cut(s)	552
MhlI	GDGCHC	2 cut(s)	487, 592
MluCI	AATT	3 cut(s)	126, 169, 552
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	318, 414
MnlI	CCTC	9 cut(s)	101, 110, 138, 176, 374, 397, 506, 592, 599
MseI	TTAA	2 cut(s)	132, 522
MspA1I	CMGCKG	2 cut(s)	58, 532
MspI	CCGG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	289
MwoI	GCNNNNNNNGC	4 cut(s)	110, 165, 420, 535
NdeI	CATATG	1 cut(s)	495
NdeII	GATC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	238, 418
NsbI	TGCGCA	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PctI	GAATGC	1 cut(s)	289
Pfl23II	CGTACG	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	531
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
Psp1406I	AACGTT	1 cut(s)	441
PspLI	CGTACG	1 cut(s)	539
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	2 cut(s)	58, 532
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
SaqAI	TTAA	2 cut(s)	132, 522
SatI	GCNGC	1 cut(s)	530
Sau3AI	GATC	1 cut(s)	41
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	487, 592
SfaNI	GCATC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	3 cut(s)	126, 169, 552
SspMI	CTAG	4 cut(s)	33, 75, 504, 560
TaaI	ACNGT	2 cut(s)	231, 544
TaiI	ACGT	2 cut(s)	190, 444
TaqI	TCGA	1 cut(s)	40
TasI	AATT	3 cut(s)	126, 169, 552
Tru1I	TTAA	2 cut(s)	132, 522
Tru9I	TTAA	2 cut(s)	132, 522
TscAI	CASTG	1 cut(s)	333
TseI	GCWGC	1 cut(s)	529
TspDTI	ATGAA	3 cut(s)	213, 222, 482
TspRI	CASTG	1 cut(s)	333
VneI	GTGCAC	1 cut(s)	483
XmiI	GTMKAC	1 cut(s)	452
XspI	CTAG	4 cut(s)	33, 75, 504, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.