Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003616

Physical Location & Seq

Genomic Coordinates Reverse (-)

65769497 .. 65774884

Gene Structure 5388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG502300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2154 bp

ATGGCCCTGAGACGCCTGCTCACTCAGGTATCTAAGCATCGATCAGAGTTGAGACAGCTGAAACAAGTTGTTTCTAGAACATATTTTCCGGTCAACAGGGTTGCAGGAGGTGCTGCTGGAGGGAATACAATTTTTAATACTCAAGAGAGGTGTCAGTCAAGCTATGTGCGCAATTTGGCTCGCAGAGGACGTGATGTTGATGAAGCTAATGAACTTGCCTATCTAAAAGAACTGTCCATGCGAAATGACCCTGAAGAAGTGATAAGATTATTTGAAAGTCAACCATCATTGCATTCCAACTCTTCAGCGCTTTCAGAATATGTGAAAGCATTGGTAAAAGTTGGCAGGCTGGATGAGAGTGAGTTACTGAAGACATTGCAGAGAGGTGTATCCAACTCTGCAAGGGAGGATGAAAGCATGGGTGGCTTCTCAGTTCTTAGGAACGTTGGGAAGTCTACAAAAGATGGCGTTCTTGGAACTGCAAGTGCACCTATTCATATGGTGGCTAGAGAAGGAGGTCATTTTAAAGAGCAGCTGTGGCGTACAGTTCGCACAATTGCACTAGCCTTTCTTTTGATATCTGGCGTTGGAGCACTCATTGAGGATAGAGGAATAAGCAAAGGACTTGGATTAAATGAAGAGGTCCAACCTAGCATGGAATCTAGCACTAAGTTTAGCGATGTCAAAGGAGTTGATGAGGCTAAGGCGGAGCTAGAAGAAATTGTTCACTATCTTCGAGATCCCAAGCGTTTCACTCGTCTTGGTGGCAAGCTACCAAAGGGTGTTTTGCTTGTTGGCCCACCTGGCACTGGAAAGACAATGTTAGCAAGAGCAATTGCCGGAGAAGCAGGGGTACCTTTCTTTTCATGCAGTGGCAGTGAATTTGAAGAGATGTTTGTTGGCGTTGGAGCTCGAAGGGTGAGGGATCTCTTTGCAGCTGCAAAGAAGCGGTCACCGTGTATTATATTTATTGATGAGATAGATGCTATAGGAGGAAGTCGCAACCCAAAGGATCAGCAGTACATGAAGATGACTCTGAATCAGTTACTTGTTGAACTTGATGGTTTTAAACAAAATGAAGGAATTATTGTTATTGCCGCTACGAATTTCCCCGAGTCACTGGACAAGGCATTGGTGAGACCTGGACGGTTTGATCGCCACATTGTTGTTCCCAATCCTGATGTTGAAGGGCGGAGGCAGATTATGGAAGTTCACATGTCTAAGGTTATGAAGGCTGATGATGTTGATTTGATGATCATTGCTAGAGGAACTCCTGGGTTCTCCGGTGCTGATCTGGCCAACTTGATCAACGTAGCTGCTCTTAAGGCTGCCATGGATGGCGCTAAAGCAGTGAGTATGGCTGATCTGGAGTATGCAAAAGACAAGATTATGATGGGAAGTGAGCGAAAGTCAGCTGTCATATCTGATGAGTCACGAAAGCTAACAGCTTTTCATGAGGGTGGCCATGCACTTGTGGCTGTTCACACTGATGGTGCCCATCCAGTTCACAAGGCAACAATAGTTCCCCGTGGTATGGCACTTGGCATGGTTGCCCAGTTGCCCGAAAAGGATGAGACAAGTGTCTCACGGAAACAGATGCTTGCGCGGCTTGATGTTTGCATGGGGGGACGGGTTGCAGAAGAGCTCATCTTTGGTGAAAGTGAAGTAACTTCTGGTGCTTCTGACGATCTCCGGCAAGCAACTGCTCTTGCCAGAGCAATGGTTACAAAGTATGGTATGAGCAAAGAAGTGGGGCTTGTCACTCACAATTATGACGACAATGGGAAGAGCATGAGCACAGAAACTAGGCTGCTTATTGAAGAAGAAGTGAAGCACCTCTTGGAAACGGCTTACAACAATGCAAAGAATATACTTACCACACATCACAAGGAGCTCCATGCTCTTGCTAATGCCTTATTGGAGCAAGAGACACTCACCGGAAAACAGATCAAGGTCTTGCTTGCTAACGTAAACTCTCAGCAGAACCAACAACCGCAACAGCAAGTTGTTGCAGAAACGTCACAGTCAAAACCAGTGCCGCCTCCATCACCACCCAATGCAGCTCAGTCTGCTGCAGCAGCAGCAGCCGCCGCCGCGGCCGCCGCTGCAACTGCTGCAGCCAAATCAAAAGGCATGGCTCCTGTGGGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009888 GO:0009941 GO:0010073 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

717

Amino Acids

77.44

Weight (kDa)

8.57

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49	PF06068	207 - 295	5.5e-06	TIP49 P-loop domain
AAA_5	PF07728	261 - 331	4.4e-06	AAA domain (dynein-related subfamily)
AAA	PF00004	262 - 391	3.8e-46	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	414 - 457	5.4e-12	AAA+ lid domain
Peptidase_M41	PF01434	473 - 651	2.9e-67	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26140
fragaria_vesca	FvH4_1g07720 FvH4_2g31730 FvH4_2g31730
malus_domestica	MD08G1063300.v1.1 MD15G1058100.v1.1 MD15G1058500.v1.1
prunus_persica	Prupe.1G410800_v2.0.a1
pyrus_communis	pycom08g05200 pycom15g05470 pycom15g05500
rosa_chinensis	RchiOBHm_Chr2g0093601 RchiOBHm_Chr6g0311091
rosa_laevigata	RLG00000010436 RLG00000016420
rosa_multiflora	Rmu_co8327861.1_g000001 Rmu_co8491229.1_g000001 Rmu_sc0002126.1_g000022 Rmu_sc0008967.1_g000002 Rmu_sc0012235.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147960 Rroxscaffold_7G00158030
rosa_rugosa	Rorug02G0037800 Rorug02G0037800 Rorug06G0385300 Rorug06G0385400
rosa_samantha	Rh2AG084300 Rh2BG084900 Rh2CG087200 Rh2DG082900 Rh6AG499400 Rh6BG509900 Rh6CG515700 Rh6DG502300
rosa_wichuraiana	Rw6G043500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	170
Acc65I	GGTACC	1 cut(s)	853
AccB1I	GGYRCC	2 cut(s)	853, 1493
AccI	GTMKAC	1 cut(s)	455
AccII	CGCG	2 cut(s)	1606, 2096
AclI	AACGTT	1 cut(s)	444
AclWI	GGATC	3 cut(s)	734, 933, 1020
AcoI	YGGCCR	3 cut(s)	1296, 1462, 2097
AcsI	RAATTY	2 cut(s)	881, 1105
AcuI	CTGAAG	3 cut(s)	273, 288, 389
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	3 cut(s)	544, 855, 1022
AfeI	AGCGCT	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	809, 1534
AflII	CTTAAG	1 cut(s)	1322
AflIII	ACRYGT	1 cut(s)	1215
AgsI	TTSAA	5 cut(s)	275, 887, 1055, 1187, 1820
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	3 cut(s)	802, 1141, 1273
AjuI	GAANNNNNNNTTGG	2 cut(s)	1823, 1855
AloI	GAACNNNNNNTCC	2 cut(s)	70, 102
Alw21I	GWGCWC	6 cut(s)	490, 595, 913, 1647, 1799, 1896
Alw26I	GTCTC	6 cut(s)	4, 46, 1132, 1568, 1588, 1922
Alw44I	GTGCAC	1 cut(s)	486
AlwI	GGATC	3 cut(s)	734, 933, 1020
Ama87I	CYCGRG	1 cut(s)	1112
Aor51HI	AGCGCT	1 cut(s)	309
AoxI	GGCC	5 cut(s)	3, 796, 1296, 1462, 2097
ApaLI	GTGCAC	1 cut(s)	486
ApoI	RAATTY	2 cut(s)	881, 1105
ArsI	GACNNNNNNTTYG	2 cut(s)	935, 967
Asp700I	GAANNNNTTC	1 cut(s)	723
Asp718I	GGTACC	1 cut(s)	853
AspLEI	GCGC	4 cut(s)	171, 310, 1343, 1606
AspS9I	GGNCC	3 cut(s)	4, 643, 797
AsuHPI	GGTGA	6 cut(s)	931, 945, 1147, 1667, 1927, 2040
AvaI	CYCGRG	1 cut(s)	1112
AvaII	GGWCC	1 cut(s)	643
BaeGI	GKGCMC	2 cut(s)	490, 1498
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BalI	TGGCCA	2 cut(s)	1298, 1464
BanI	GGYRCC	2 cut(s)	853, 1493
BanII	GRGCYC	3 cut(s)	913, 1647, 1896
BarI	GAAGNNNNNNTAC	2 cut(s)	837, 869
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	6 cut(s)	490, 595, 913, 1647, 1799, 1896
BccI	CCATC	8 cut(s)	292, 458, 1055, 1331, 1387, 1484, 1506, 2053
BceAI	ACGGC	1 cut(s)	1863
BciT130I	CCWGG	3 cut(s)	804, 1143, 1275
BciVI	GTATCC	1 cut(s)	400
BclI	TGATCA	2 cut(s)	1254, 1305
BcoDI	GTCTC	6 cut(s)	4, 46, 1132, 1568, 1588, 1922
BfaI	CTAG	8 cut(s)	75, 507, 563, 651, 663, 713, 1263, 1806
BfmI	CTRYAG	3 cut(s)	987, 2073, 2115
BfoI	RGCGCY	2 cut(s)	311, 1344
BfrI	CTTAAG	1 cut(s)	1322
BfuI	GTATCC	1 cut(s)	400
BglI	GCCNNNNNGGC	2 cut(s)	804, 2096
Bme1390I	CCNGG	3 cut(s)	804, 1143, 1275
Bme18I	GGWCC	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	1112
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	3 cut(s)	4, 643, 797
BmiI	GGNNCC	3 cut(s)	855, 1495, 2139
BmrFI	CCNGG	3 cut(s)	804, 1143, 1275
BmrI	ACTGGG	1 cut(s)	1549
BmsI	GCATC	3 cut(s)	46, 973, 1587
BmuI	ACTGGG	1 cut(s)	1549
BoxI	GACNNNNGTC	1 cut(s)	1580
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	2 cut(s)	138, 1388
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	126
Bsa29I	ATCGAT	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	1132
BsaJI	CCNNGG	4 cut(s)	1274, 1332, 1528, 2094
BsaWI	WCCGGW	3 cut(s)	88, 1283, 1937
Bsc4I	CCNNNNNNNGG	2 cut(s)	809, 1534
Bse1I	ACTGG	5 cut(s)	814, 1125, 1502, 1555, 2033
Bse3DI	GCAATG	4 cut(s)	287, 374, 1257, 1725
BseBI	CCWGG	3 cut(s)	804, 1143, 1275
BseCI	ATCGAT	1 cut(s)	40
BseDI	CCNNGG	4 cut(s)	1274, 1332, 1528, 2094
BseGI	GGATG	5 cut(s)	358, 415, 1342, 1498, 1576
BseLI	CCNNNNNNNGG	2 cut(s)	809, 1534
BseMI	GCAATG	4 cut(s)	287, 374, 1257, 1725
BseMII	CTCAG	4 cut(s)	38, 444, 1991, 2078
BseNI	ACTGG	5 cut(s)	814, 1125, 1502, 1555, 2033
BseSI	GKGCMC	2 cut(s)	490, 1498
BseX3I	CGGCCG	1 cut(s)	2097
Bsh1236I	CGCG	2 cut(s)	1606, 2096
Bsh1285I	CGRYCG	1 cut(s)	2100
BshFI	GGCC	5 cut(s)	5, 798, 1298, 1464, 2099
BshNI	GGYRCC	2 cut(s)	853, 1493
BshVI	ATCGAT	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	2100
BsiHKAI	GWGCWC	6 cut(s)	490, 595, 913, 1647, 1799, 1896
BsiHKCI	CYCGRG	1 cut(s)	1112
BsiSI	CCGG	5 cut(s)	89, 840, 1284, 1693, 1938
BslFI	GGGAC	1 cut(s)	1641
BslI	CCNNNNNNNGG	2 cut(s)	809, 1534
BsmAI	GTCTC	6 cut(s)	4, 46, 1132, 1568, 1588, 1922
BsmBI	CGTCTC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	1641
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	5 cut(s)	5, 798, 1298, 1464, 2099
Bso31I	GGTCTC	1 cut(s)	1132
BsoBI	CYCGRG	1 cut(s)	1112
Bsp1286I	GDGCHC	7 cut(s)	490, 595, 913, 1498, 1647, 1799, 1896
Bsp19I	CCATGG	1 cut(s)	1332
BspANI	GGCC	5 cut(s)	5, 798, 1298, 1464, 2099
BspCNI	CTCAG	4 cut(s)	37, 443, 1990, 2077
BspDI	ATCGAT	1 cut(s)	40
BspFNI	CGCG	2 cut(s)	1606, 2096
BspHI	TCATGA	1 cut(s)	1453
BspLI	GGNNCC	3 cut(s)	855, 1495, 2139
BspMAI	CTGCAG	2 cut(s)	2077, 2119
BspPI	GGATC	3 cut(s)	734, 933, 1020
BspQI	GCTCTTC	2 cut(s)	1635, 1781
BspT107I	GGYRCC	2 cut(s)	853, 1493
BspTI	CTTAAG	1 cut(s)	1322
BspTNI	GGTCTC	1 cut(s)	1132
BsrDI	GCAATG	4 cut(s)	287, 374, 1257, 1725
BsrI	ACTGG	5 cut(s)	814, 1125, 1502, 1555, 2033
BssECI	CCNNGG	4 cut(s)	1274, 1332, 1528, 2094
BssNI	GRCGYC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	1332
Bst2UI	CCWGG	3 cut(s)	804, 1143, 1275
Bst4CI	ACNGT	5 cut(s)	234, 547, 957, 1149, 2025
Bst6I	CTCTTC	5 cut(s)	307, 633, 882, 1635, 1781
BstACI	GRCGYC	1 cut(s)	13
BstAFI	CTTAAG	1 cut(s)	1322
BstAPI	GCANNNNNTGC	2 cut(s)	110, 2114
BstC8I	GCNNGC	7 cut(s)	17, 181, 347, 770, 1602, 1698, 1962
BstDSI	CCRYGG	3 cut(s)	1332, 1528, 2094
BstEII	GGTNACC	1 cut(s)	951
BstF5I	GGATG	5 cut(s)	358, 415, 1342, 1498, 1576
BstFNI	CGCG	2 cut(s)	1606, 2096
BstH2I	RGCGCY	2 cut(s)	311, 1344
BstHHI	GCGC	4 cut(s)	171, 310, 1343, 1606
BstMAI	GTCTC	6 cut(s)	4, 46, 1132, 1568, 1588, 1922
BstMCI	CGRYCG	1 cut(s)	2100
BstNI	CCWGG	3 cut(s)	804, 1143, 1275
BstNSI	RCATGY	1 cut(s)	1219
BstPAI	GACNNNNGTC	1 cut(s)	1580
BstPI	GGTNACC	1 cut(s)	951
BstSCI	CCNGG	3 cut(s)	802, 1141, 1273
BstSFI	CTRYAG	3 cut(s)	987, 2073, 2115
BstSLI	GKGCMC	2 cut(s)	490, 1498
BstUI	CGCG	2 cut(s)	1606, 2096
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	3 cut(s)	739, 925, 2147
BstXI	CCANNNNNNTGG	1 cut(s)	1720
BstYI	RGATCY	3 cut(s)	739, 925, 2147
BstZI	CGGCCG	1 cut(s)	2097
Bsu15I	ATCGAT	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	5 cut(s)	5, 798, 1298, 1464, 2099
BsuTUI	ATCGAT	1 cut(s)	40
BtgI	CCRYGG	3 cut(s)	1332, 1528, 2094
BtgZI	GCGATG	1 cut(s)	693
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	5 cut(s)	358, 415, 1342, 1498, 1576
BtsI	GCAGTG	3 cut(s)	877, 883, 1356
BtsIMutI	CAGTG	7 cut(s)	807, 877, 883, 1118, 1356, 1485, 2040
Cac8I	GCNNGC	7 cut(s)	17, 181, 347, 770, 1602, 1698, 1962
CciI	TCATGA	1 cut(s)	1453
CciNI	GCGGCCGC	1 cut(s)	2097
CfoI	GCGC	4 cut(s)	171, 310, 1343, 1606
Cfr13I	GGNCC	3 cut(s)	4, 643, 797
Cfr42I	CCGCGG	1 cut(s)	2097
ClaI	ATCGAT	1 cut(s)	40
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	3 cut(s)	543, 854, 1021
CviQI	GTAC	3 cut(s)	543, 854, 1021
DraI	TTTAAA	2 cut(s)	526, 1069
EaeI	YGGCCR	3 cut(s)	1296, 1462, 2097
EagI	CGGCCG	1 cut(s)	2097
Eam1104I	CTCTTC	5 cut(s)	307, 633, 882, 1635, 1781
EarI	CTCTTC	5 cut(s)	307, 633, 882, 1635, 1781
EciI	GGCGGA	2 cut(s)	722, 1207
Ecl136II	GAGCTC	3 cut(s)	911, 1645, 1894
EclXI	CGGCCG	1 cut(s)	2097
Eco130I	CCWWGG	1 cut(s)	1332
Eco24I	GRGCYC	3 cut(s)	913, 1647, 1896
Eco31I	GGTCTC	1 cut(s)	1132
Eco32I	GATATC	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	643
Eco47III	AGCGCT	1 cut(s)	309
Eco52I	CGGCCG	1 cut(s)	2097
Eco53kI	GAGCTC	3 cut(s)	911, 1645, 1894
Eco57I	CTGAAG	3 cut(s)	273, 288, 389
Eco88I	CYCGRG	1 cut(s)	1112
Eco91I	GGTNACC	1 cut(s)	951
EcoICRI	GAGCTC	3 cut(s)	911, 1645, 1894
EcoO65I	GGTNACC	1 cut(s)	951
EcoRII	CCWGG	3 cut(s)	802, 1141, 1273
EcoRV	GATATC	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	1332
EcoT38I	GRGCYC	3 cut(s)	913, 1647, 1896
ErhI	CCWWGG	1 cut(s)	1332
Esp3I	CGTCTC	1 cut(s)	4
FalI	AAGNNNNNCTT	4 cut(s)	1740, 1772, 1823, 1855
FaqI	GGGAC	1 cut(s)	1641
FauNDI	CATATG	1 cut(s)	498
FbaI	TGATCA	2 cut(s)	1254, 1305
FblI	GTMKAC	1 cut(s)	455
FokI	GGATG	5 cut(s)	365, 422, 1349, 1485, 1583
FriOI	GRGCYC	3 cut(s)	913, 1647, 1896
FspBI	CTAG	8 cut(s)	75, 507, 563, 651, 663, 713, 1263, 1806
FspI	TGCGCA	1 cut(s)	170
GlaI	GCGC	4 cut(s)	170, 309, 1342, 1605
GsuI	CTGGAG	2 cut(s)	138, 1388
HaeII	RGCGCY	2 cut(s)	311, 1344
HaeIII	GGCC	5 cut(s)	5, 798, 1298, 1464, 2099
HapII	CCGG	5 cut(s)	89, 840, 1284, 1693, 1938
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	4 cut(s)	171, 310, 1343, 1606
Hin1I	GRCGYC	1 cut(s)	13
Hin6I	GCGC	4 cut(s)	169, 308, 1341, 1604
HinP1I	GCGC	4 cut(s)	169, 308, 1341, 1604
HincII	GTYRAC	2 cut(s)	94, 281
HindII	GTYRAC	2 cut(s)	94, 281
HinfI	GANTC	5 cut(s)	659, 1033, 1039, 1115, 1430
HpaII	CCGG	5 cut(s)	89, 840, 1284, 1693, 1938
HphI	GGTGA	6 cut(s)	931, 945, 1147, 1667, 1927, 2040
Hpy166II	GTNNAC	9 cut(s)	94, 281, 456, 488, 727, 1213, 1483, 1507, 1972
Hpy188I	TCNGA	5 cut(s)	46, 316, 1038, 1426, 1684
Hpy188III	TCNNGA	7 cut(s)	75, 143, 737, 1178, 1367, 1434, 1454
Hpy8I	GTNNAC	9 cut(s)	94, 281, 456, 488, 727, 1213, 1483, 1507, 1972
HpyAV	CCTTC	5 cut(s)	506, 909, 1073, 1181, 1225
HpyCH4III	ACNGT	5 cut(s)	234, 547, 957, 1149, 2025
HpyCH4IV	ACGT	5 cut(s)	190, 444, 1311, 1968, 2018
HpySE526I	ACGT	5 cut(s)	190, 444, 1311, 1968, 2018
Hsp92I	GRCGYC	1 cut(s)	13
HspAI	GCGC	4 cut(s)	169, 308, 1341, 1604
KpnI	GGTACC	1 cut(s)	857
Ksp22I	TGATCA	2 cut(s)	1254, 1305
KspI	CCGCGG	1 cut(s)	2097
LguI	GCTCTTC	2 cut(s)	1635, 1781
LmnI	GCTCC	7 cut(s)	590, 709, 908, 1891, 1899, 1921, 2143
LweI	GCATC	3 cut(s)	46, 973, 1587
MaeI	CTAG	8 cut(s)	75, 507, 563, 651, 663, 713, 1263, 1806
MaeII	ACGT	5 cut(s)	190, 444, 1311, 1968, 2018
MaeIII	GTNAC	9 cut(s)	363, 951, 1044, 1116, 1431, 1666, 1723, 1759, 2019
MfeI	CAATTG	2 cut(s)	555, 834
MflI	RGATCY	3 cut(s)	739, 925, 2147
MhlI	GDGCHC	7 cut(s)	490, 595, 913, 1498, 1647, 1799, 1896
MlsI	TGGCCA	2 cut(s)	1298, 1464
MluCI	AATT	9 cut(s)	129, 172, 555, 720, 834, 881, 1083, 1105, 1768
MluNI	TGGCCA	2 cut(s)	1298, 1464
MlyI	GAGTC	3 cut(s)	1027, 1124, 1439
MmeI	TCCRAC	5 cut(s)	321, 417, 568, 670, 886
Mox20I	TGGCCA	2 cut(s)	1298, 1464
MroXI	GAANNNNTTC	1 cut(s)	723
MscI	TGGCCA	2 cut(s)	1298, 1464
MseI	TTAA	5 cut(s)	135, 525, 632, 1068, 1323
MslI	CAYNNNNRTG	4 cut(s)	1028, 1458, 1488, 1770
Msp20I	TGGCCA	2 cut(s)	1298, 1464
MspA1I	CMGCKG	6 cut(s)	58, 535, 938, 1415, 2096, 2105
MspCI	CTTAAG	1 cut(s)	1322
MspI	CCGG	5 cut(s)	89, 840, 1284, 1693, 1938
MspR9I	CCNGG	3 cut(s)	804, 1143, 1275
MunI	CAATTG	2 cut(s)	555, 834
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	3 cut(s)	804, 1143, 1275
MvnI	CGCG	2 cut(s)	1606, 2096
NcoI	CCATGG	1 cut(s)	1332
NdeI	CATATG	1 cut(s)	498
NlaIV	GGNNCC	3 cut(s)	855, 1495, 2139
NmuCI	GTSAC	5 cut(s)	951, 1116, 1431, 1759, 2019
NotI	GCGGCCGC	1 cut(s)	2097
NsbI	TGCGCA	1 cut(s)	170
NspI	RCATGY	1 cut(s)	1219
PagI	TCATGA	1 cut(s)	1453
PciI	ACATGT	1 cut(s)	1215
PciSI	GCTCTTC	2 cut(s)	1635, 1781
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PctI	GAATGC	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	659, 1039
PleI	GAGTC	3 cut(s)	1027, 1123, 1438
PpsI	GAGTC	3 cut(s)	1027, 1123, 1438
PscI	ACATGT	1 cut(s)	1215
PshAI	GACNNNNGTC	1 cut(s)	1580
Psp124BI	GAGCTC	3 cut(s)	913, 1647, 1896
Psp1406I	AACGTT	1 cut(s)	444
Psp6I	CCWGG	3 cut(s)	802, 1141, 1273
PspEI	GGTNACC	1 cut(s)	951
PspGI	CCWGG	3 cut(s)	802, 1141, 1273
PspN4I	GGNNCC	3 cut(s)	855, 1495, 2139
PspPI	GGNCC	3 cut(s)	4, 643, 797
PstI	CTGCAG	2 cut(s)	2077, 2119
PsuI	RGATCY	3 cut(s)	739, 925, 2147
PvuII	CAGCTG	4 cut(s)	58, 535, 938, 1415
RsaI	GTAC	3 cut(s)	544, 855, 1022
RsaNI	GTAC	3 cut(s)	543, 854, 1021
RseI	CAYNNNNRTG	4 cut(s)	1028, 1458, 1488, 1770
SacI	GAGCTC	3 cut(s)	913, 1647, 1896
SacII	CCGCGG	1 cut(s)	2097
SapI	GCTCTTC	2 cut(s)	1635, 1781
SaqAI	TTAA	5 cut(s)	135, 525, 632, 1068, 1323
Sau96I	GGNCC	3 cut(s)	4, 643, 797
SchI	GAGTC	3 cut(s)	1027, 1124, 1439
ScrFI	CCNGG	3 cut(s)	804, 1143, 1275
SduI	GDGCHC	7 cut(s)	490, 595, 913, 1498, 1647, 1799, 1896
SfaNI	GCATC	3 cut(s)	46, 973, 1587
SfcI	CTRYAG	3 cut(s)	987, 2073, 2115
Sfr303I	CCGCGG	1 cut(s)	2097
SgrBI	CCGCGG	1 cut(s)	2097
SinI	GGWCC	1 cut(s)	643
SmiMI	CAYNNNNRTG	4 cut(s)	1028, 1458, 1488, 1770
SmlI	CTYRAG	2 cut(s)	141, 1322
SmoI	CTYRAG	2 cut(s)	141, 1322
Sse9I	AATT	9 cut(s)	129, 172, 555, 720, 834, 881, 1083, 1105, 1768
SspMI	CTAG	8 cut(s)	75, 507, 563, 651, 663, 713, 1263, 1806
SstI	GAGCTC	3 cut(s)	913, 1647, 1896
StyD4I	CCNGG	3 cut(s)	802, 1141, 1273
StyI	CCWWGG	1 cut(s)	1332
TaaI	ACNGT	5 cut(s)	234, 547, 957, 1149, 2025
TaiI	ACGT	5 cut(s)	193, 447, 1314, 1971, 2021
TaqI	TCGA	3 cut(s)	40, 736, 913
TasI	AATT	9 cut(s)	129, 172, 555, 720, 834, 881, 1083, 1105, 1768
TatI	WGTACW	1 cut(s)	1020
TauI	GCSGC	9 cut(s)	1100, 1609, 2041, 2090, 2093, 2096, 2099, 2102, 2105
TfiI	GAWTC	2 cut(s)	659, 1039
Tru1I	TTAA	5 cut(s)	135, 525, 632, 1068, 1323
Tru9I	TTAA	5 cut(s)	135, 525, 632, 1068, 1323
TscAI	CASTG	7 cut(s)	814, 877, 883, 1125, 1356, 1492, 2040
TseFI	GTSAC	5 cut(s)	951, 1116, 1431, 1759, 2019
Tsp45I	GTSAC	5 cut(s)	951, 1116, 1431, 1759, 2019
TspGWI	ACGGA	1 cut(s)	1603
TspRI	CASTG	7 cut(s)	814, 877, 883, 1125, 1356, 1492, 2040
Vha464I	CTTAAG	1 cut(s)	1322
VneI	GTGCAC	1 cut(s)	486
VpaK11BI	GGWCC	1 cut(s)	643
XapI	RAATTY	2 cut(s)	881, 1105
XbaI	TCTAGA	1 cut(s)	74
XceI	RCATGY	1 cut(s)	1219
XmiI	GTMKAC	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	8 cut(s)	75, 507, 563, 651, 663, 713, 1263, 1806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.