Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012235.1

Orthogroup ID

OG0003616

Physical Location & Seq

Genomic Coordinates Forward (+)

559 .. 2411

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012235.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

atgttagcaagagcaattgccggagaagcaggggtacctttcttttcatgcagtggcagtgaatttgaagagatgtttgttggcgttggagctcgaagggtgagggatctctttgcagctgcaaagaagcggtcaccgtgtattatatttattgatgagatagatgctataggaggaagtcgcaacccaaaggatcagcagtacatgaagatgactctgaatcagttacttgttgaacttgatggttttaaacaaaatgaaggaattattgttattgccgctactaatttccccgagtcactggacaaggcattggtgagacctggacggtttgatcgccacattgttgttcccaatcctgatgttgaagggcggaggcagattatggaagttcacatgtctaaggttatgaaggctgatgatgttgatttgatgatcattgctagaggaactcctgggttctctggtgccgatctggccaacttgatcaacgtagctgctcttaaggctgccatggatggcgctaaagcagtgagtatggctgatctggagtatgcaaaagacaagattatgatgggaagtgagcgaaagtcagctgtcatatctgatgagtcacgaaagctaacagcttttcatgagggtggccatgcacttgtggctgttcacactgatggtgctcatccagttcacaaggcaacaatagttccccgtggtatggcacttggcatggttgcccagttacctgaaaaggatgagacaagtgtctcacggaaacagatgcttgcgcggcttgatgtttgcatggggggacgggttgcagaagagctcatcttcggtgaaagtgaagtaacttctggtgcttctgatgatctccggcaagcaactgctcttgccagagcaatggtgacaaagtatggtatgagcaaagaagtggggcttgtcactcacaattatgacgacaatgggaagagcatgagcacagaaactaggctgcttattgaagaagaagtgaagcacctcttggaaacggcttacaacaatgcaaagaatatacttaccacacatcacaaggagctccatgctcttgctaatgccttattggagcaagagacactcaccggaaaacagatcaaggtcttgcttgctaacgtaaactctcagcagaaccaacaaccgcaacagcaagttgttgcagaaacgtcacagtcaaaaccagtgccgcctccatcaccacccaatgcagctcagtctgcagcagcagcagcagcagccgccgcggccgctgctgcaactgctgcagccaaatcaaaaggcatggctcctgtgggatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009888 GO:0009941 GO:0010073 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

444

Amino Acids

47.44

Weight (kDa)

6.33

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26140
fragaria_vesca	FvH4_1g07720 FvH4_2g31730 FvH4_2g31730
malus_domestica	MD08G1063300.v1.1 MD15G1058100.v1.1 MD15G1058500.v1.1
prunus_persica	Prupe.1G410800_v2.0.a1
pyrus_communis	pycom08g05200 pycom15g05470 pycom15g05500
rosa_chinensis	RchiOBHm_Chr2g0093601 RchiOBHm_Chr6g0311091
rosa_laevigata	RLG00000010436 RLG00000016420
rosa_multiflora	Rmu_co8327861.1_g000001 Rmu_co8491229.1_g000001 Rmu_sc0002126.1_g000022 Rmu_sc0008967.1_g000002 Rmu_sc0012235.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147960 Rroxscaffold_7G00158030
rosa_rugosa	Rorug02G0037800 Rorug02G0037800 Rorug06G0385300 Rorug06G0385400
rosa_samantha	Rh2AG084300 Rh2BG084900 Rh2CG087200 Rh2DG082900 Rh6AG499400 Rh6BG509900 Rh6CG515700 Rh6DG502300
rosa_wichuraiana	Rw6G043500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	34
AccB1I	GGYRCC	2 cut(s)	34, 467
AccII	CGCG	2 cut(s)	787, 1277
AclWI	GGATC	2 cut(s)	114, 201
AcoI	YGGCCR	3 cut(s)	477, 643, 1278
AcsI	RAATTY	1 cut(s)	62
AfaI	GTAC	2 cut(s)	36, 203
AfiI	CCNNNNNNNGG	1 cut(s)	715
AflII	CTTAAG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	4 cut(s)	68, 236, 368, 1001
AjnI	CCWGG	2 cut(s)	322, 454
AjuI	GAANNNNNNNTTGG	2 cut(s)	1004, 1036
AluBI	AGCT	9 cut(s)	92, 119, 497, 596, 622, 629, 826, 1075, 1244
AluI	AGCT	9 cut(s)	92, 119, 497, 596, 622, 629, 826, 1075, 1244
Alw21I	GWGCWC	5 cut(s)	94, 679, 828, 980, 1077
Alw26I	GTCTC	4 cut(s)	313, 749, 769, 1103
AlwI	GGATC	2 cut(s)	114, 201
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	3 cut(s)	477, 643, 1278
ApoI	RAATTY	1 cut(s)	62
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
Asp718I	GGTACC	1 cut(s)	34
AspLEI	GCGC	2 cut(s)	524, 787
AsuHPI	GGTGA	7 cut(s)	112, 126, 328, 848, 916, 1108, 1221
AvaI	CYCGRG	1 cut(s)	293
BalI	TGGCCA	2 cut(s)	479, 645
BanI	GGYRCC	2 cut(s)	34, 467
BanII	GRGCYC	3 cut(s)	94, 828, 1077
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
Bbv12I	GWGCWC	5 cut(s)	94, 679, 828, 980, 1077
BccI	CCATC	5 cut(s)	236, 512, 568, 665, 1234
BceAI	ACGGC	1 cut(s)	1044
BciT130I	CCWGG	2 cut(s)	324, 456
BclI	TGATCA	2 cut(s)	435, 486
BcoDI	GTCTC	4 cut(s)	313, 749, 769, 1103
BfaI	CTAG	2 cut(s)	444, 987
BfmI	CTRYAG	3 cut(s)	168, 1251, 1296
BfoI	RGCGCY	1 cut(s)	525
BfrI	CTTAAG	1 cut(s)	503
BglI	GCCNNNNNGGC	2 cut(s)	476, 1277
Bme1390I	CCNGG	2 cut(s)	324, 456
BmeT110I	CYCGRG	1 cut(s)	293
BmiI	GGNNCC	3 cut(s)	36, 469, 1320
BmrFI	CCNGG	2 cut(s)	324, 456
BmrI	ACTGGG	1 cut(s)	730
BmsI	GCATC	2 cut(s)	154, 768
BmuI	ACTGGG	1 cut(s)	730
BoxI	GACNNNNGTC	1 cut(s)	761
BpmI	CTGGAG	1 cut(s)	569
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	4 cut(s)	455, 513, 709, 1275
BsaWI	WCCGGW	1 cut(s)	1118
Bsc4I	CCNNNNNNNGG	1 cut(s)	715
Bse1I	ACTGG	4 cut(s)	306, 683, 736, 1214
Bse3DI	GCAATG	2 cut(s)	438, 906
BseBI	CCWGG	2 cut(s)	324, 456
BseDI	CCNNGG	4 cut(s)	455, 513, 709, 1275
BseGI	GGATG	3 cut(s)	523, 679, 757
BseLI	CCNNNNNNNGG	1 cut(s)	715
BseMI	GCAATG	2 cut(s)	438, 906
BseMII	CTCAG	2 cut(s)	1172, 1259
BseNI	ACTGG	4 cut(s)	306, 683, 736, 1214
BseX3I	CGGCCG	1 cut(s)	1278
Bsh1236I	CGCG	2 cut(s)	787, 1277
Bsh1285I	CGRYCG	1 cut(s)	1281
BshFI	GGCC	3 cut(s)	479, 645, 1280
BshNI	GGYRCC	2 cut(s)	34, 467
BsiEI	CGRYCG	1 cut(s)	1281
BsiHKAI	GWGCWC	5 cut(s)	94, 679, 828, 980, 1077
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	3 cut(s)	21, 874, 1119
BslFI	GGGAC	1 cut(s)	822
BslI	CCNNNNNNNGG	1 cut(s)	715
BsmAI	GTCTC	4 cut(s)	313, 749, 769, 1103
BsmFI	GGGAC	1 cut(s)	822
BsnI	GGCC	3 cut(s)	479, 645, 1280
Bso31I	GGTCTC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	5 cut(s)	94, 679, 828, 980, 1077
Bsp19I	CCATGG	1 cut(s)	513
BspANI	GGCC	3 cut(s)	479, 645, 1280
BspCNI	CTCAG	2 cut(s)	1171, 1258
BspFNI	CGCG	2 cut(s)	787, 1277
BspHI	TCATGA	1 cut(s)	634
BspLI	GGNNCC	3 cut(s)	36, 469, 1320
BspMAI	CTGCAG	2 cut(s)	1255, 1300
BspPI	GGATC	2 cut(s)	114, 201
BspQI	GCTCTTC	2 cut(s)	816, 962
BspT107I	GGYRCC	2 cut(s)	34, 467
BspTI	CTTAAG	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	313
BsrDI	GCAATG	2 cut(s)	438, 906
BsrI	ACTGG	4 cut(s)	306, 683, 736, 1214
BssECI	CCNNGG	4 cut(s)	455, 513, 709, 1275
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	324, 456
Bst4CI	ACNGT	3 cut(s)	138, 330, 1206
Bst6I	CTCTTC	3 cut(s)	63, 816, 962
BstAFI	CTTAAG	1 cut(s)	503
BstAPI	GCANNNNNTGC	1 cut(s)	1295
BstC8I	GCNNGC	3 cut(s)	783, 879, 1143
BstDEI	CTNAG	4 cut(s)	402, 1158, 1245, 1332
BstDSI	CCRYGG	3 cut(s)	513, 709, 1275
BstEII	GGTNACC	1 cut(s)	132
BstF5I	GGATG	3 cut(s)	523, 679, 757
BstFNI	CGCG	2 cut(s)	787, 1277
BstH2I	RGCGCY	1 cut(s)	525
BstHHI	GCGC	2 cut(s)	524, 787
BstMAI	GTCTC	4 cut(s)	313, 749, 769, 1103
BstMCI	CGRYCG	1 cut(s)	1281
BstNI	CCWGG	2 cut(s)	324, 456
BstNSI	RCATGY	1 cut(s)	400
BstPAI	GACNNNNGTC	1 cut(s)	761
BstPI	GGTNACC	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	322, 454
BstSFI	CTRYAG	3 cut(s)	168, 1251, 1296
BstUI	CGCG	2 cut(s)	787, 1277
BstX2I	RGATCY	2 cut(s)	106, 1328
BstXI	CCANNNNNNTGG	1 cut(s)	901
BstYI	RGATCY	2 cut(s)	106, 1328
BstZI	CGGCCG	1 cut(s)	1278
BsuRI	GGCC	3 cut(s)	479, 645, 1280
BtgI	CCRYGG	3 cut(s)	513, 709, 1275
BtsCI	GGATG	3 cut(s)	523, 679, 757
BtsI	GCAGTG	3 cut(s)	58, 64, 537
BtsIMutI	CAGTG	6 cut(s)	58, 64, 299, 537, 666, 1221
Cac8I	GCNNGC	3 cut(s)	783, 879, 1143
CciI	TCATGA	1 cut(s)	634
CciNI	GCGGCCGC	1 cut(s)	1278
CfoI	GCGC	2 cut(s)	524, 787
Cfr42I	CCGCGG	1 cut(s)	1278
Csp6I	GTAC	2 cut(s)	35, 202
CviQI	GTAC	2 cut(s)	35, 202
DdeI	CTNAG	4 cut(s)	402, 1158, 1245, 1332
DraI	TTTAAA	1 cut(s)	250
EaeI	YGGCCR	3 cut(s)	477, 643, 1278
EagI	CGGCCG	1 cut(s)	1278
Eam1104I	CTCTTC	3 cut(s)	63, 816, 962
EarI	CTCTTC	3 cut(s)	63, 816, 962
EciI	GGCGGA	1 cut(s)	388
Ecl136II	GAGCTC	3 cut(s)	92, 826, 1075
EclXI	CGGCCG	1 cut(s)	1278
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	3 cut(s)	94, 828, 1077
Eco31I	GGTCTC	1 cut(s)	313
Eco52I	CGGCCG	1 cut(s)	1278
Eco53kI	GAGCTC	3 cut(s)	92, 826, 1075
Eco88I	CYCGRG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	132
EcoICRI	GAGCTC	3 cut(s)	92, 826, 1075
EcoO65I	GGTNACC	1 cut(s)	132
EcoRII	CCWGG	2 cut(s)	322, 454
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	3 cut(s)	94, 828, 1077
ErhI	CCWWGG	1 cut(s)	513
FalI	AAGNNNNNCTT	4 cut(s)	921, 953, 1004, 1036
FaqI	GGGAC	1 cut(s)	822
FbaI	TGATCA	2 cut(s)	435, 486
FokI	GGATG	3 cut(s)	530, 666, 764
FriOI	GRGCYC	3 cut(s)	94, 828, 1077
FspBI	CTAG	2 cut(s)	444, 987
GlaI	GCGC	2 cut(s)	523, 786
GsuI	CTGGAG	1 cut(s)	569
HaeII	RGCGCY	1 cut(s)	525
HaeIII	GGCC	3 cut(s)	479, 645, 1280
HapII	CCGG	3 cut(s)	21, 874, 1119
HhaI	GCGC	2 cut(s)	524, 787
Hin6I	GCGC	2 cut(s)	522, 785
HinP1I	GCGC	2 cut(s)	522, 785
HinfI	GANTC	4 cut(s)	214, 220, 296, 611
HpaII	CCGG	3 cut(s)	21, 874, 1119
HphI	GGTGA	7 cut(s)	112, 126, 328, 848, 916, 1108, 1221
Hpy166II	GTNNAC	4 cut(s)	394, 664, 688, 1153
Hpy188I	TCNGA	3 cut(s)	219, 607, 865
Hpy188III	TCNNGA	4 cut(s)	359, 548, 615, 635
Hpy8I	GTNNAC	4 cut(s)	394, 664, 688, 1153
HpyAV	CCTTC	4 cut(s)	90, 254, 362, 406
HpyCH4III	ACNGT	3 cut(s)	138, 330, 1206
HpyCH4IV	ACGT	3 cut(s)	492, 1149, 1199
HpyF3I	CTNAG	4 cut(s)	402, 1158, 1245, 1332
HpySE526I	ACGT	3 cut(s)	492, 1149, 1199
HspAI	GCGC	2 cut(s)	522, 785
KpnI	GGTACC	1 cut(s)	38
Ksp22I	TGATCA	2 cut(s)	435, 486
KspI	CCGCGG	1 cut(s)	1278
LguI	GCTCTTC	2 cut(s)	816, 962
LmnI	GCTCC	5 cut(s)	89, 1072, 1080, 1102, 1324
LweI	GCATC	2 cut(s)	154, 768
MaeI	CTAG	2 cut(s)	444, 987
MaeII	ACGT	3 cut(s)	492, 1149, 1199
MaeIII	GTNAC	9 cut(s)	132, 225, 297, 612, 738, 847, 904, 940, 1200
MboII	GAAGA	7 cut(s)	80, 220, 823, 833, 979, 1013, 1016
MfeI	CAATTG	1 cut(s)	15
MflI	RGATCY	2 cut(s)	106, 1328
MhlI	GDGCHC	5 cut(s)	94, 679, 828, 980, 1077
MlsI	TGGCCA	2 cut(s)	479, 645
MluCI	AATT	5 cut(s)	15, 62, 264, 286, 949
MluNI	TGGCCA	2 cut(s)	479, 645
MlyI	GAGTC	3 cut(s)	208, 305, 620
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	7 cut(s)	96, 167, 369, 440, 631, 1028, 1233
Mox20I	TGGCCA	2 cut(s)	479, 645
MscI	TGGCCA	2 cut(s)	479, 645
MseI	TTAA	2 cut(s)	249, 504
MslI	CAYNNNNRTG	4 cut(s)	209, 639, 669, 951
Msp20I	TGGCCA	2 cut(s)	479, 645
MspA1I	CMGCKG	4 cut(s)	119, 596, 1277, 1283
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	3 cut(s)	21, 874, 1119
MspR9I	CCNGG	2 cut(s)	324, 456
MunI	CAATTG	1 cut(s)	15
MvaI	CCWGG	2 cut(s)	324, 456
MvnI	CGCG	2 cut(s)	787, 1277
NcoI	CCATGG	1 cut(s)	513
NlaIV	GGNNCC	3 cut(s)	36, 469, 1320
NmuCI	GTSAC	6 cut(s)	132, 297, 612, 904, 940, 1200
NotI	GCGGCCGC	1 cut(s)	1278
NspI	RCATGY	1 cut(s)	400
PagI	TCATGA	1 cut(s)	634
PciI	ACATGT	1 cut(s)	396
PciSI	GCTCTTC	2 cut(s)	816, 962
PfeI	GAWTC	1 cut(s)	220
PleI	GAGTC	3 cut(s)	208, 304, 619
PpsI	GAGTC	3 cut(s)	208, 304, 619
PscI	ACATGT	1 cut(s)	396
PshAI	GACNNNNGTC	1 cut(s)	761
Psp124BI	GAGCTC	3 cut(s)	94, 828, 1077
Psp6I	CCWGG	2 cut(s)	322, 454
PspEI	GGTNACC	1 cut(s)	132
PspGI	CCWGG	2 cut(s)	322, 454
PspN4I	GGNNCC	3 cut(s)	36, 469, 1320
PstI	CTGCAG	2 cut(s)	1255, 1300
PsuI	RGATCY	2 cut(s)	106, 1328
PvuII	CAGCTG	2 cut(s)	119, 596
RsaI	GTAC	2 cut(s)	36, 203
RsaNI	GTAC	2 cut(s)	35, 202
RseI	CAYNNNNRTG	4 cut(s)	209, 639, 669, 951
SacI	GAGCTC	3 cut(s)	94, 828, 1077
SacII	CCGCGG	1 cut(s)	1278
SapI	GCTCTTC	2 cut(s)	816, 962
SaqAI	TTAA	2 cut(s)	249, 504
SchI	GAGTC	3 cut(s)	208, 305, 620
ScrFI	CCNGG	2 cut(s)	324, 456
SduI	GDGCHC	5 cut(s)	94, 679, 828, 980, 1077
SfaNI	GCATC	2 cut(s)	154, 768
SfcI	CTRYAG	3 cut(s)	168, 1251, 1296
Sfr303I	CCGCGG	1 cut(s)	1278
SgrBI	CCGCGG	1 cut(s)	1278
SmiMI	CAYNNNNRTG	4 cut(s)	209, 639, 669, 951
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	5 cut(s)	15, 62, 264, 286, 949
SspMI	CTAG	2 cut(s)	444, 987
SstI	GAGCTC	3 cut(s)	94, 828, 1077
StyD4I	CCNGG	2 cut(s)	322, 454
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	138, 330, 1206
TaiI	ACGT	3 cut(s)	495, 1152, 1202
TaqI	TCGA	1 cut(s)	94
TasI	AATT	5 cut(s)	15, 62, 264, 286, 949
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	7 cut(s)	281, 790, 1222, 1274, 1277, 1280, 1283
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	249, 504
Tru9I	TTAA	2 cut(s)	249, 504
TscAI	CASTG	6 cut(s)	58, 64, 306, 537, 673, 1221
TseFI	GTSAC	6 cut(s)	132, 297, 612, 904, 940, 1200
Tsp45I	GTSAC	6 cut(s)	132, 297, 612, 904, 940, 1200
TspDTI	ATGAA	5 cut(s)	36, 221, 273, 425, 623
TspGWI	ACGGA	1 cut(s)	784
TspRI	CASTG	6 cut(s)	58, 64, 306, 537, 673, 1221
Vha464I	CTTAAG	1 cut(s)	503
XapI	RAATTY	1 cut(s)	62
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	2 cut(s)	444, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.