Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327861.1

Orthogroup ID

OG0003616

Physical Location & Seq

Genomic Coordinates Reverse (-)

295 .. 792

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327861.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgttaggcgtatccaactctgcaagggaggatgacagcatgggtggcttctcagttcttaggaacgttgggaagtctacaaaagatggtgttcttggaactgcaagtgcacctattcatatggtggctagagaaggaggtcattttaaagagcagctgtggcgtacagttcgcacaattgcactagcctttcttttgatatctggcgtaggagcactcattgaggatagaggaataagcaaaggacttggattaaatgaagaggtccaacctagcatggaatctagcactaagtttagcgatgtcaaaggagttgatgaggctaaggcggagctagaagaaattgttcactatctccgagatcccaaggtagatgcatttagctttacaaccagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009888 GO:0009941 GO:0010073 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

132

Amino Acids

14.2

Weight (kDa)

5.36

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26140
fragaria_vesca	FvH4_1g07720 FvH4_2g31730 FvH4_2g31730
malus_domestica	MD08G1063300.v1.1 MD15G1058100.v1.1 MD15G1058500.v1.1
prunus_persica	Prupe.1G410800_v2.0.a1
pyrus_communis	pycom08g05200 pycom15g05470 pycom15g05500
rosa_chinensis	RchiOBHm_Chr2g0093601 RchiOBHm_Chr6g0311091
rosa_laevigata	RLG00000010436 RLG00000016420
rosa_multiflora	Rmu_co8327861.1_g000001 Rmu_co8491229.1_g000001 Rmu_sc0002126.1_g000022 Rmu_sc0008967.1_g000002 Rmu_sc0012235.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147960 Rroxscaffold_7G00158030
rosa_rugosa	Rorug02G0037800 Rorug02G0037800 Rorug06G0385300 Rorug06G0385400
rosa_samantha	Rh2AG084300 Rh2BG084900 Rh2CG087200 Rh2DG082900 Rh6AG499400 Rh6BG509900 Rh6CG515700 Rh6DG502300
rosa_wichuraiana	Rw6G043500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	77
AciI	CCGC	1 cut(s)	329
AclI	AACGTT	1 cut(s)	66
AclWI	GGATC	1 cut(s)	356
AfaI	GTAC	1 cut(s)	166
AluBI	AGCT	4 cut(s)	157, 334, 384, 396
AluI	AGCT	4 cut(s)	157, 334, 384, 396
Alw21I	GWGCWC	2 cut(s)	112, 217
Alw44I	GTGCAC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	356
ApaLI	GTGCAC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	154
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	112
Bbv12I	GWGCWC	2 cut(s)	112, 217
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	22
BfaI	CTAG	5 cut(s)	129, 185, 273, 285, 335
BfuI	GTATCC	1 cut(s)	22
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmsI	GCATC	1 cut(s)	364
Bpu10I	CCTNAGC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	166
BsiHKAI	GWGCWC	2 cut(s)	112, 217
Bsp1286I	GDGCHC	2 cut(s)	112, 217
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	65
BspPI	GGATC	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	255
BstDEI	CTNAG	4 cut(s)	52, 59, 291, 324
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 160
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	2 cut(s)	40, 277
CviJI	RGCY	8 cut(s)	48, 128, 157, 188, 323, 334, 384, 396
CviKI_1	RGCY	8 cut(s)	48, 128, 157, 188, 323, 334, 384, 396
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	4 cut(s)	52, 59, 291, 324
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DraI	TTTAAA	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	43, 280
FaiI	YATR	4 cut(s)	41, 120, 122, 278
FatI	CATG	2 cut(s)	39, 276
FauNDI	CATATG	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	5 cut(s)	129, 185, 273, 285, 335
GluI	GCNGC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	43, 280
HinfI	GANTC	1 cut(s)	281
Hpy166II	GTNNAC	3 cut(s)	78, 110, 349
Hpy188I	TCNGA	1 cut(s)	359
Hpy8I	GTNNAC	3 cut(s)	78, 110, 349
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	5 cut(s)	23, 104, 110, 182, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 160
HpyF3I	CTNAG	4 cut(s)	52, 59, 291, 324
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	43, 280
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	2 cut(s)	212, 331
LpnPI	CCDG	1 cut(s)	189
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	5 cut(s)	129, 185, 273, 285, 335
MaeII	ACGT	1 cut(s)	66
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	2 cut(s)	272, 350
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	2 cut(s)	112, 217
MluCI	AATT	2 cut(s)	177, 342
MmeI	TCCRAC	2 cut(s)	39, 292
MnlI	CCTC	6 cut(s)	22, 131, 217, 224, 256, 313
Mph1103I	ATGCAT	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	2 cut(s)	147, 254
MspA1I	CMGCKG	2 cut(s)	157, 396
MunI	CAATTG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	45, 160
NdeI	CATATG	1 cut(s)	120
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	2 cut(s)	43, 280
NsiI	ATGCAT	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	156
Psp1406I	AACGTT	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	2 cut(s)	157, 396
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	147, 254
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	1 cut(s)	265
SduI	GDGCHC	2 cut(s)	112, 217
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	2 cut(s)	177, 342
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	5 cut(s)	129, 185, 273, 285, 335
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	69
TasI	AATT	2 cut(s)	177, 342
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	147, 254
Tru9I	TTAA	2 cut(s)	147, 254
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	107, 273
VneI	GTGCAC	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	5 cut(s)	129, 185, 273, 285, 335
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.