Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003616

Physical Location & Seq

Genomic Coordinates Forward (+)

1632148 .. 1636782

Gene Structure 4635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010436

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2154 bp

ATGGCCCTGAGACGCCTGCTGACTCAGGTATCTAGGCATCGATCAGAGTTGGGACAGCTGAAACAAGTTGTTTCTAGAACATATTTTCCGGTCAACAGGGTTGCAGGAGGTGCTGGAGGGAATACAATTTTTAATACTCAAGAGAGGTGTCAGTCAAGCTATGTGCGCAATTTGGCTCGCAGAGGACGTGATGTTGATGAAGCTAATGAACTTGCCTATCTAAAAGAACTGTCCATGCGAAATGACCCTGAAGAAGTGATAAGATTATTTGAAAGTCAACCATCATTGCATTCCAACTCTTCGGCGCTTTCAGAATATGTGAAAGCATTGGTAAAAGTTGGCAGGCTGGATGAGAGTGAGTTACTGAAGACAGTGCAGAGAGGTGTATCCAACTCTGCAAGGGAGGATGAAAGCATGGGTGGCTTCTCAGTTCTTAGGAACGTTGGGAAGTCTACAAAAGATGGCGTTCTTGGAACTGCAAGTGCACCTATTCATATGGTGGCTAGAGAAGGAGGTCATTTTAAAGAGCAGCTGTGGCGTACAGTTCGCACAATTGCACTAGCCTTTCTTTTGATATCTGGCGTAGGAGCACTCATTGAGGATAGAGGAATAAGCAAAGGACTTGGATTAAATGAAGAGGTCCAACCTAGCATGGAATCTAGCACTAAGTTTAGCGATGTCAAAGGAGTTGATGAGGCTAAGGCGGAGCTAGAAGAAATTGTTCACTATCTCCGAGATCCCAAGCGTTTCACTCGTCTAGGTGGCAAGCTACCAAAGGGTGTTTTGCTTGTTGGCCCACCTGGCACTGGAAAGACAATGTTAGCAAGAGCAATTGCCGGAGAAGCAGGGGTACCTTTCTTTTCATGCAGTGGCAGTGAATTTGAAGAGATGTTTGTTGGCGTTGGAGCTCGAAGGGTGAGGGATCTCTTTGCAGCTGCAAAGAAGCGGTCACCGTGTATTATATTTATTGATGAGATAGATGCCATAGGAGGAAGTCGCAACCCAAAGGATCAGCAATACATGAAGATGACTCTGAATCAGTTACTCGTTGAACTTGATGGTTTTAAACAAAATGAAGGAATTATTGTTATTGCCGCTACTAATTTCCCCGAGTCACTGGACAAGGCATTAGTGAGACCTGGACGGTTTGATCGCCACATTGTTGTTCCCAATCCTGATGTTGAAGGGCGGAGGCAGATTATGGAAGTTCACATGTCTAAGGTTATGAAGGCTGATGATGTTGATTTGATGATCATTGCTAGAGGAACTCCTGGGTTCTCCGGTGCTGATCTAGCCAACTTGATCAACGTAGCTGCTCTTAAGGCTGCCATGGATGGCGCTAAAGCAGTGAGTATGGCTGATCTGGAGTATGCAAAAGACAAGATTATGATGGGAAGTGAGCGAAAGTCGGCTGTCATATCTGATGAGTCACGAAAGCTAACAGCTTTTCATGAGGGTGGCCATGCACTTGTGGCTATTCACACTGATGGTGCTCATCCAGTTCACAAGGCAACAATAGTTCCCCGTGGTATGGCACTTGGCATGGTTGCCCAGTTGCCCGAAAAGGATGAGACAAGTGTGTCACGGAAACAGATGCTTGCGCGGCTTGATGTTTGCATGGGGGGACGGGTTGCAGAAGAGCTCATCTTTGGTGAAAGTGAAGTAACTTCTGGTGCTTCTGATGATCTCCGGCAAGCAACTGCTCTTGCCAGAGCAATGGTTACAAAGTATGGTATGAGCAAAGAAGTGGGGCTTGTCACTCACAATTATGACGACAATGGGAAGAGCATGAGCACAGAAACTAGGCTGCTTATTGAAGAAGAAGTGAAGCACCTCTTGGAAACGGCTTACAACAATGCAAAGAATATACTTACCACACATCACAAGGAGCTCCATGCTCTTGCTAATGCCTTATTGGAGCAAGAGACACTCACCGGAAAACAGATCAAGGTCTTGCTTGCTAACGTAAACTCTCAGCAGAACCAACAACCGCAACAGCAAGTTGTTGCAGAAACGTCACAGTCAAAACCAGTGCCGCCTCCATCACCACCCAATGCAGCTCAGTCTGCTGCAGCAGCAGCAGCCGCAGCCGCCGCGGCCGCCGCTGCAACTGCTGCAGCCAAATCAAAAGGCATGGCTCCTGTGGGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009888 GO:0009941 GO:0010073 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

718

Amino Acids

77.37

Weight (kDa)

8.39

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49	PF06068	206 - 294	5.5e-06	TIP49 P-loop domain
AAA_5	PF07728	260 - 330	4.4e-06	AAA domain (dynein-related subfamily)
AAA	PF00004	261 - 390	3.8e-46	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	413 - 456	5.4e-12	AAA+ lid domain
Peptidase_M41	PF01434	472 - 650	2.8e-67	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26140
fragaria_vesca	FvH4_1g07720 FvH4_2g31730 FvH4_2g31730
malus_domestica	MD08G1063300.v1.1 MD15G1058100.v1.1 MD15G1058500.v1.1
prunus_persica	Prupe.1G410800_v2.0.a1
pyrus_communis	pycom08g05200 pycom15g05470 pycom15g05500
rosa_chinensis	RchiOBHm_Chr2g0093601 RchiOBHm_Chr6g0311091
rosa_laevigata	RLG00000010436 RLG00000016420
rosa_multiflora	Rmu_co8327861.1_g000001 Rmu_co8491229.1_g000001 Rmu_sc0002126.1_g000022 Rmu_sc0008967.1_g000002 Rmu_sc0012235.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147960 Rroxscaffold_7G00158030
rosa_rugosa	Rorug02G0037800 Rorug02G0037800 Rorug06G0385300 Rorug06G0385400
rosa_samantha	Rh2AG084300 Rh2BG084900 Rh2CG087200 Rh2DG082900 Rh6AG499400 Rh6BG509900 Rh6CG515700 Rh6DG502300
rosa_wichuraiana	Rw6G043500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1579
Acc16I	TGCGCA	1 cut(s)	167
Acc65I	GGTACC	1 cut(s)	850
AccB1I	GGYRCC	1 cut(s)	850
AccI	GTMKAC	1 cut(s)	452
AccII	CGCG	2 cut(s)	1603, 2096
AclI	AACGTT	1 cut(s)	441
AclWI	GGATC	3 cut(s)	731, 930, 1017
AcoI	YGGCCR	2 cut(s)	1459, 2097
AcsI	RAATTY	1 cut(s)	878
AcuI	CTGAAG	2 cut(s)	270, 386
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	2 cut(s)	541, 852
AfiI	CCNNNNNNNGG	2 cut(s)	806, 1531
AflII	CTTAAG	1 cut(s)	1319
AflIII	ACRYGT	1 cut(s)	1212
AgsI	TTSAA	5 cut(s)	272, 884, 1052, 1184, 1817
AjiI	CACGTC	1 cut(s)	188
AjnI	CCWGG	3 cut(s)	799, 1138, 1270
AjuI	GAANNNNNNNTTGG	2 cut(s)	1820, 1852
AloI	GAACNNNNNNTCC	2 cut(s)	70, 102
Alw21I	GWGCWC	7 cut(s)	487, 592, 910, 1495, 1644, 1796, 1893
Alw26I	GTCTC	4 cut(s)	4, 1129, 1565, 1919
Alw44I	GTGCAC	1 cut(s)	483
AlwI	GGATC	3 cut(s)	731, 930, 1017
Ama87I	CYCGRG	1 cut(s)	1109
AoxI	GGCC	4 cut(s)	3, 793, 1459, 2097
ApaLI	GTGCAC	1 cut(s)	483
ApoI	RAATTY	1 cut(s)	878
ArsI	GACNNNNNNTTYG	2 cut(s)	932, 964
Asp700I	GAANNNNTTC	1 cut(s)	720
Asp718I	GGTACC	1 cut(s)	850
AspLEI	GCGC	4 cut(s)	168, 307, 1340, 1603
AspS9I	GGNCC	3 cut(s)	4, 640, 794
AsuHPI	GGTGA	5 cut(s)	928, 942, 1664, 1924, 2037
AvaI	CYCGRG	1 cut(s)	1109
AvaII	GGWCC	1 cut(s)	640
BaeGI	GKGCMC	1 cut(s)	487
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BalI	TGGCCA	1 cut(s)	1461
BanI	GGYRCC	1 cut(s)	850
BanII	GRGCYC	3 cut(s)	910, 1644, 1893
BarI	GAAGNNNNNNTAC	2 cut(s)	834, 866
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	7 cut(s)	487, 592, 910, 1495, 1644, 1796, 1893
BccI	CCATC	7 cut(s)	289, 455, 1052, 1328, 1384, 1481, 2050
BceAI	ACGGC	1 cut(s)	1860
BciT130I	CCWGG	3 cut(s)	801, 1140, 1272
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	2 cut(s)	1251, 1302
BcoDI	GTCTC	4 cut(s)	4, 1129, 1565, 1919
BfmI	CTRYAG	2 cut(s)	2070, 2115
BfoI	RGCGCY	2 cut(s)	308, 1341
BfrI	CTTAAG	1 cut(s)	1319
BfuI	GTATCC	1 cut(s)	397
BglI	GCCNNNNNGGC	2 cut(s)	801, 2096
Bme1390I	CCNGG	3 cut(s)	801, 1140, 1272
Bme18I	GGWCC	1 cut(s)	640
BmeT110I	CYCGRG	1 cut(s)	1109
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	3 cut(s)	4, 640, 794
BmiI	GGNNCC	2 cut(s)	852, 2139
BmrFI	CCNGG	3 cut(s)	801, 1140, 1272
BmrI	ACTGGG	1 cut(s)	1546
BmsI	GCATC	3 cut(s)	46, 970, 1584
BmuI	ACTGGG	1 cut(s)	1546
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	2 cut(s)	135, 1385
Bpu10I	CCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	1129
BsaJI	CCNNGG	4 cut(s)	1271, 1329, 1525, 2094
BsaWI	WCCGGW	3 cut(s)	88, 1280, 1934
Bsc4I	CCNNNNNNNGG	2 cut(s)	806, 1531
Bse1I	ACTGG	5 cut(s)	811, 1122, 1499, 1552, 2030
Bse3DI	GCAATG	3 cut(s)	284, 1254, 1722
BseBI	CCWGG	3 cut(s)	801, 1140, 1272
BseCI	ATCGAT	1 cut(s)	40
BseDI	CCNNGG	4 cut(s)	1271, 1329, 1525, 2094
BseGI	GGATG	5 cut(s)	355, 412, 1339, 1495, 1573
BseLI	CCNNNNNNNGG	2 cut(s)	806, 1531
BseMI	GCAATG	3 cut(s)	284, 1254, 1722
BseMII	CTCAG	4 cut(s)	38, 441, 1988, 2075
BseNI	ACTGG	5 cut(s)	811, 1122, 1499, 1552, 2030
BseSI	GKGCMC	1 cut(s)	487
BseX3I	CGGCCG	1 cut(s)	2097
BsgI	GTGCAG	1 cut(s)	395
Bsh1236I	CGCG	2 cut(s)	1603, 2096
Bsh1285I	CGRYCG	1 cut(s)	2100
BshFI	GGCC	4 cut(s)	5, 795, 1461, 2099
BshNI	GGYRCC	1 cut(s)	850
BshVI	ATCGAT	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	2100
BsiHKAI	GWGCWC	7 cut(s)	487, 592, 910, 1495, 1644, 1796, 1893
BsiHKCI	CYCGRG	1 cut(s)	1109
BsiSI	CCGG	5 cut(s)	89, 837, 1281, 1690, 1935
BslFI	GGGAC	2 cut(s)	66, 1638
BslI	CCNNNNNNNGG	2 cut(s)	806, 1531
BsmAI	GTCTC	4 cut(s)	4, 1129, 1565, 1919
BsmBI	CGTCTC	1 cut(s)	4
BsmFI	GGGAC	2 cut(s)	66, 1638
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	4 cut(s)	5, 795, 1461, 2099
Bso31I	GGTCTC	1 cut(s)	1129
BsoBI	CYCGRG	1 cut(s)	1109
Bsp1286I	GDGCHC	7 cut(s)	487, 592, 910, 1495, 1644, 1796, 1893
Bsp19I	CCATGG	1 cut(s)	1329
BspANI	GGCC	4 cut(s)	5, 795, 1461, 2099
BspCNI	CTCAG	4 cut(s)	37, 440, 1987, 2074
BspDI	ATCGAT	1 cut(s)	40
BspFNI	CGCG	2 cut(s)	1603, 2096
BspHI	TCATGA	1 cut(s)	1450
BspLI	GGNNCC	2 cut(s)	852, 2139
BspMAI	CTGCAG	2 cut(s)	2074, 2119
BspPI	GGATC	3 cut(s)	731, 930, 1017
BspQI	GCTCTTC	2 cut(s)	1632, 1778
BspT107I	GGYRCC	1 cut(s)	850
BspTI	CTTAAG	1 cut(s)	1319
BspTNI	GGTCTC	1 cut(s)	1129
BsrDI	GCAATG	3 cut(s)	284, 1254, 1722
BsrI	ACTGG	5 cut(s)	811, 1122, 1499, 1552, 2030
BssECI	CCNNGG	4 cut(s)	1271, 1329, 1525, 2094
BssNI	GRCGYC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	1329
Bst2UI	CCWGG	3 cut(s)	801, 1140, 1272
Bst4CI	ACNGT	6 cut(s)	231, 373, 544, 954, 1146, 2022
Bst6I	CTCTTC	5 cut(s)	304, 630, 879, 1632, 1778
BstACI	GRCGYC	1 cut(s)	13
BstAFI	CTTAAG	1 cut(s)	1319
BstAPI	GCANNNNNTGC	2 cut(s)	110, 2114
BstC8I	GCNNGC	7 cut(s)	17, 178, 344, 767, 1599, 1695, 1959
BstDEI	CTNAG	9 cut(s)	8, 24, 427, 434, 666, 699, 1218, 1974, 2061
BstDSI	CCRYGG	3 cut(s)	1329, 1525, 2094
BstEII	GGTNACC	1 cut(s)	948
BstF5I	GGATG	5 cut(s)	355, 412, 1339, 1495, 1573
BstFNI	CGCG	2 cut(s)	1603, 2096
BstH2I	RGCGCY	2 cut(s)	308, 1341
BstHHI	GCGC	4 cut(s)	168, 307, 1340, 1603
BstMAI	GTCTC	4 cut(s)	4, 1129, 1565, 1919
BstMCI	CGRYCG	1 cut(s)	2100
BstNI	CCWGG	3 cut(s)	801, 1140, 1272
BstNSI	RCATGY	1 cut(s)	1216
BstPI	GGTNACC	1 cut(s)	948
BstSCI	CCNGG	3 cut(s)	799, 1138, 1270
BstSFI	CTRYAG	2 cut(s)	2070, 2115
BstSLI	GKGCMC	1 cut(s)	487
BstUI	CGCG	2 cut(s)	1603, 2096
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	3 cut(s)	736, 922, 2147
BstXI	CCANNNNNNTGG	1 cut(s)	1717
BstYI	RGATCY	3 cut(s)	736, 922, 2147
BstZI	CGGCCG	1 cut(s)	2097
Bsu15I	ATCGAT	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	4 cut(s)	5, 795, 1461, 2099
BsuTUI	ATCGAT	1 cut(s)	40
BtgI	CCRYGG	3 cut(s)	1329, 1525, 2094
BtgZI	GCGATG	1 cut(s)	690
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	5 cut(s)	355, 412, 1339, 1495, 1573
BtsI	GCAGTG	3 cut(s)	874, 880, 1353
BtsIMutI	CAGTG	8 cut(s)	378, 804, 874, 880, 1115, 1353, 1482, 2037
Cac8I	GCNNGC	7 cut(s)	17, 178, 344, 767, 1599, 1695, 1959
CciI	TCATGA	1 cut(s)	1450
CciNI	GCGGCCGC	1 cut(s)	2097
CfoI	GCGC	4 cut(s)	168, 307, 1340, 1603
Cfr13I	GGNCC	3 cut(s)	4, 640, 794
Cfr42I	CCGCGG	1 cut(s)	2097
ClaI	ATCGAT	1 cut(s)	40
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	540, 851
CviQI	GTAC	2 cut(s)	540, 851
DdeI	CTNAG	9 cut(s)	8, 24, 427, 434, 666, 699, 1218, 1974, 2061
DraI	TTTAAA	2 cut(s)	523, 1066
DrdI	GACNNNNNNGTC	1 cut(s)	1579
DseDI	GACNNNNNNGTC	1 cut(s)	1579
EaeI	YGGCCR	2 cut(s)	1459, 2097
EagI	CGGCCG	1 cut(s)	2097
Eam1104I	CTCTTC	5 cut(s)	304, 630, 879, 1632, 1778
EarI	CTCTTC	5 cut(s)	304, 630, 879, 1632, 1778
EciI	GGCGGA	2 cut(s)	719, 1204
Ecl136II	GAGCTC	3 cut(s)	908, 1642, 1891
EclXI	CGGCCG	1 cut(s)	2097
Eco130I	CCWWGG	1 cut(s)	1329
Eco24I	GRGCYC	3 cut(s)	910, 1644, 1893
Eco31I	GGTCTC	1 cut(s)	1129
Eco32I	GATATC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	640
Eco52I	CGGCCG	1 cut(s)	2097
Eco53kI	GAGCTC	3 cut(s)	908, 1642, 1891
Eco57I	CTGAAG	2 cut(s)	270, 386
Eco88I	CYCGRG	1 cut(s)	1109
Eco91I	GGTNACC	1 cut(s)	948
EcoICRI	GAGCTC	3 cut(s)	908, 1642, 1891
EcoO65I	GGTNACC	1 cut(s)	948
EcoRII	CCWGG	3 cut(s)	799, 1138, 1270
EcoRV	GATATC	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	1329
EcoT38I	GRGCYC	3 cut(s)	910, 1644, 1893
ErhI	CCWWGG	1 cut(s)	1329
Esp3I	CGTCTC	1 cut(s)	4
FalI	AAGNNNNNCTT	4 cut(s)	1737, 1769, 1820, 1852
FaqI	GGGAC	2 cut(s)	66, 1638
FauNDI	CATATG	1 cut(s)	495
FbaI	TGATCA	2 cut(s)	1251, 1302
FblI	GTMKAC	1 cut(s)	452
FokI	GGATG	5 cut(s)	362, 419, 1346, 1482, 1580
FriOI	GRGCYC	3 cut(s)	910, 1644, 1893
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	4 cut(s)	167, 306, 1339, 1602
GsuI	CTGGAG	2 cut(s)	135, 1385
HaeII	RGCGCY	2 cut(s)	308, 1341
HaeIII	GGCC	4 cut(s)	5, 795, 1461, 2099
HapII	CCGG	5 cut(s)	89, 837, 1281, 1690, 1935
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	4 cut(s)	168, 307, 1340, 1603
Hin1I	GRCGYC	1 cut(s)	13
Hin6I	GCGC	4 cut(s)	166, 305, 1338, 1601
HinP1I	GCGC	4 cut(s)	166, 305, 1338, 1601
HincII	GTYRAC	2 cut(s)	94, 278
HindII	GTYRAC	2 cut(s)	94, 278
HinfI	GANTC	6 cut(s)	22, 656, 1030, 1036, 1112, 1427
HpaII	CCGG	5 cut(s)	89, 837, 1281, 1690, 1935
HphI	GGTGA	5 cut(s)	928, 942, 1664, 1924, 2037
Hpy166II	GTNNAC	8 cut(s)	94, 278, 453, 485, 724, 1210, 1504, 1969
Hpy188I	TCNGA	6 cut(s)	46, 313, 734, 1035, 1423, 1681
Hpy188III	TCNNGA	6 cut(s)	75, 140, 1175, 1364, 1431, 1451
Hpy8I	GTNNAC	8 cut(s)	94, 278, 453, 485, 724, 1210, 1504, 1969
HpyAV	CCTTC	5 cut(s)	503, 906, 1070, 1178, 1222
HpyCH4III	ACNGT	6 cut(s)	231, 373, 544, 954, 1146, 2022
HpyCH4IV	ACGT	5 cut(s)	187, 441, 1308, 1965, 2015
HpyF3I	CTNAG	9 cut(s)	8, 24, 427, 434, 666, 699, 1218, 1974, 2061
HpySE526I	ACGT	5 cut(s)	187, 441, 1308, 1965, 2015
Hsp92I	GRCGYC	1 cut(s)	13
HspAI	GCGC	4 cut(s)	166, 305, 1338, 1601
KpnI	GGTACC	1 cut(s)	854
Ksp22I	TGATCA	2 cut(s)	1251, 1302
KspI	CCGCGG	1 cut(s)	2097
LguI	GCTCTTC	2 cut(s)	1632, 1778
LmnI	GCTCC	7 cut(s)	587, 706, 905, 1888, 1896, 1918, 2143
LweI	GCATC	3 cut(s)	46, 970, 1584
MaeII	ACGT	5 cut(s)	187, 441, 1308, 1965, 2015
MfeI	CAATTG	2 cut(s)	552, 831
MflI	RGATCY	3 cut(s)	736, 922, 2147
MhlI	GDGCHC	7 cut(s)	487, 592, 910, 1495, 1644, 1796, 1893
MlsI	TGGCCA	1 cut(s)	1461
MluCI	AATT	9 cut(s)	126, 169, 552, 717, 831, 878, 1080, 1102, 1765
MluNI	TGGCCA	1 cut(s)	1461
MlyI	GAGTC	4 cut(s)	16, 1024, 1121, 1436
MmeI	TCCRAC	4 cut(s)	318, 414, 667, 883
Mox20I	TGGCCA	1 cut(s)	1461
MroXI	GAANNNNTTC	1 cut(s)	720
MscI	TGGCCA	1 cut(s)	1461
MseI	TTAA	6 cut(s)	132, 522, 629, 1065, 1320, 2152
MslI	CAYNNNNRTG	4 cut(s)	1025, 1455, 1485, 1767
Msp20I	TGGCCA	1 cut(s)	1461
MspA1I	CMGCKG	5 cut(s)	58, 532, 935, 2096, 2105
MspCI	CTTAAG	1 cut(s)	1319
MspI	CCGG	5 cut(s)	89, 837, 1281, 1690, 1935
MspR9I	CCNGG	3 cut(s)	801, 1140, 1272
MunI	CAATTG	2 cut(s)	552, 831
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	3 cut(s)	801, 1140, 1272
MvnI	CGCG	2 cut(s)	1603, 2096
NcoI	CCATGG	1 cut(s)	1329
NdeI	CATATG	1 cut(s)	495
NlaIV	GGNNCC	2 cut(s)	852, 2139
NmuCI	GTSAC	6 cut(s)	948, 1113, 1428, 1581, 1756, 2016
NotI	GCGGCCGC	1 cut(s)	2097
NsbI	TGCGCA	1 cut(s)	167
NspI	RCATGY	1 cut(s)	1216
PagI	TCATGA	1 cut(s)	1450
PciI	ACATGT	1 cut(s)	1212
PciSI	GCTCTTC	2 cut(s)	1632, 1778
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PctI	GAATGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	2 cut(s)	656, 1036
PleI	GAGTC	4 cut(s)	16, 1024, 1120, 1435
PpsI	GAGTC	4 cut(s)	16, 1024, 1120, 1435
PscI	ACATGT	1 cut(s)	1212
Psp124BI	GAGCTC	3 cut(s)	910, 1644, 1893
Psp1406I	AACGTT	1 cut(s)	441
Psp6I	CCWGG	3 cut(s)	799, 1138, 1270
PspEI	GGTNACC	1 cut(s)	948
PspGI	CCWGG	3 cut(s)	799, 1138, 1270
PspN4I	GGNNCC	2 cut(s)	852, 2139
PspPI	GGNCC	3 cut(s)	4, 640, 794
PstI	CTGCAG	2 cut(s)	2074, 2119
PsuI	RGATCY	3 cut(s)	736, 922, 2147
PvuII	CAGCTG	3 cut(s)	58, 532, 935
RsaI	GTAC	2 cut(s)	541, 852
RsaNI	GTAC	2 cut(s)	540, 851
RseI	CAYNNNNRTG	4 cut(s)	1025, 1455, 1485, 1767
SacI	GAGCTC	3 cut(s)	910, 1644, 1893
SacII	CCGCGG	1 cut(s)	2097
SapI	GCTCTTC	2 cut(s)	1632, 1778
SaqAI	TTAA	6 cut(s)	132, 522, 629, 1065, 1320, 2152
Sau96I	GGNCC	3 cut(s)	4, 640, 794
SchI	GAGTC	4 cut(s)	16, 1024, 1121, 1436
ScrFI	CCNGG	3 cut(s)	801, 1140, 1272
SduI	GDGCHC	7 cut(s)	487, 592, 910, 1495, 1644, 1796, 1893
SfaNI	GCATC	3 cut(s)	46, 970, 1584
SfcI	CTRYAG	2 cut(s)	2070, 2115
Sfr303I	CCGCGG	1 cut(s)	2097
SgrBI	CCGCGG	1 cut(s)	2097
SinI	GGWCC	1 cut(s)	640
SmiMI	CAYNNNNRTG	4 cut(s)	1025, 1455, 1485, 1767
SmlI	CTYRAG	2 cut(s)	138, 1319
SmoI	CTYRAG	2 cut(s)	138, 1319
Sse9I	AATT	9 cut(s)	126, 169, 552, 717, 831, 878, 1080, 1102, 1765
SstI	GAGCTC	3 cut(s)	910, 1644, 1893
StyD4I	CCNGG	3 cut(s)	799, 1138, 1270
StyI	CCWWGG	1 cut(s)	1329
TaaI	ACNGT	6 cut(s)	231, 373, 544, 954, 1146, 2022
TaiI	ACGT	5 cut(s)	190, 444, 1311, 1968, 2018
TaqI	TCGA	2 cut(s)	40, 910
TasI	AATT	9 cut(s)	126, 169, 552, 717, 831, 878, 1080, 1102, 1765
TauI	GCSGC	9 cut(s)	1097, 1606, 2038, 2087, 2093, 2096, 2099, 2102, 2105
TfiI	GAWTC	2 cut(s)	656, 1036
Tru1I	TTAA	6 cut(s)	132, 522, 629, 1065, 1320, 2152
Tru9I	TTAA	6 cut(s)	132, 522, 629, 1065, 1320, 2152
TscAI	CASTG	8 cut(s)	378, 811, 874, 880, 1122, 1353, 1489, 2037
TseFI	GTSAC	6 cut(s)	948, 1113, 1428, 1581, 1756, 2016
Tsp45I	GTSAC	6 cut(s)	948, 1113, 1428, 1581, 1756, 2016
TspGWI	ACGGA	1 cut(s)	1600
TspRI	CASTG	8 cut(s)	378, 811, 874, 880, 1122, 1353, 1489, 2037
Vha464I	CTTAAG	1 cut(s)	1319
VneI	GTGCAC	1 cut(s)	483
VpaK11BI	GGWCC	1 cut(s)	640
XapI	RAATTY	1 cut(s)	878
XbaI	TCTAGA	1 cut(s)	74
XceI	RCATGY	1 cut(s)	1216
XmiI	GTMKAC	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.