Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003616

Physical Location & Seq

Genomic Coordinates Reverse (-)

6493054 .. 6493341

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG082900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTATGGAATGAGCTTGAAGATTGGGCTTGTTTTCCATAACTACGAAGAAAGTTTCAGAAGTACTTTGAGTGCCGAAACTAGATCTCTTATTGAGAATGATGTGAAAGAACTGTTAGAAAAGGCTTACAAGAATGCAAAAAACATATTGACGACTCATCTTGAAGAGCTTCATGCACTAGCTAATGCATTACTCGAGCATGAGACTCTTTCTGAGAGTCAGATTAAGGAATTACTTGTTCAGGTGAACTCTCTTCCGTCTGCGCAAAACACCCATGAATCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

95

Amino Acids

10.77

Weight (kDa)

5.26

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	2 - 78	2.1e-16	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26140
fragaria_vesca	FvH4_1g07720 FvH4_2g31730 FvH4_2g31730
malus_domestica	MD08G1063300.v1.1 MD15G1058100.v1.1 MD15G1058500.v1.1
prunus_persica	Prupe.1G410800_v2.0.a1
pyrus_communis	pycom08g05200 pycom15g05470 pycom15g05500
rosa_chinensis	RchiOBHm_Chr2g0093601 RchiOBHm_Chr6g0311091
rosa_laevigata	RLG00000010436 RLG00000016420
rosa_multiflora	Rmu_co8327861.1_g000001 Rmu_co8491229.1_g000001 Rmu_sc0002126.1_g000022 Rmu_sc0008967.1_g000002 Rmu_sc0012235.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147960 Rroxscaffold_7G00158030
rosa_rugosa	Rorug02G0037800 Rorug02G0037800 Rorug06G0385300 Rorug06G0385400
rosa_samantha	Rh2AG084300 Rh2BG084900 Rh2CG087200 Rh2DG082900 Rh6AG499400 Rh6BG509900 Rh6CG515700 Rh6DG502300
rosa_wichuraiana	Rw6G043500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	264
AfaI	GTAC	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	19, 164
AluBI	AGCT	3 cut(s)	15, 169, 182
AluI	AGCT	3 cut(s)	15, 169, 182
Alw26I	GTCTC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	3 cut(s)	81, 179, 286
BglII	AGATCT	1 cut(s)	83
BmcAI	AGTACT	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	159
BssMI	GATC	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	114
Bst6I	CTCTTC	2 cut(s)	159, 258
BstDEI	CTNAG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	86
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
CfoI	GCGC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	3 cut(s)	173, 200, 275
CviJI	RGCY	5 cut(s)	15, 28, 125, 169, 182
CviKI_1	RGCY	5 cut(s)	15, 28, 125, 169, 182
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
Eam1104I	CTCTTC	2 cut(s)	159, 258
EarI	CTCTTC	2 cut(s)	159, 258
Eco88I	CYCGRG	1 cut(s)	194
EcoT22I	ATGCAT	1 cut(s)	190
FaeI	CATG	3 cut(s)	176, 203, 278
FaiI	YATR	6 cut(s)	6, 39, 146, 174, 201, 276
FatI	CATG	3 cut(s)	172, 199, 274
FspBI	CTAG	3 cut(s)	81, 179, 286
FspEI	CC	8 cut(s)	9, 10, 50, 88, 107, 212, 227, 270
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	1 cut(s)	264
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	176, 203, 278
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	4 cut(s)	154, 205, 217, 278
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	3 cut(s)	59, 214, 222
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	137, 176, 188
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	176, 203, 278
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	83
LguI	GCTCTTC	1 cut(s)	159
LpnPI	CCDG	1 cut(s)	227
MaeI	CTAG	3 cut(s)	81, 179, 286
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	4 cut(s)	31, 59, 176, 245
MflI	RGATCY	1 cut(s)	83
MluCI	AATT	1 cut(s)	230
MlyI	GAGTC	3 cut(s)	148, 199, 226
Mph1103I	ATGCAT	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	1 cut(s)	225
Mva1269I	GAATGC	1 cut(s)	139
NdeII	GATC	1 cut(s)	83
NlaIII	CATG	3 cut(s)	176, 203, 278
NsbI	TGCGCA	1 cut(s)	264
NsiI	ATGCAT	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	159
PctI	GAATGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	278
PleI	GAGTC	3 cut(s)	148, 199, 225
PpsI	GAGTC	3 cut(s)	148, 199, 225
PspXI	VCTCGAGB	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	83
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	3 cut(s)	148, 199, 226
SetI	ASST	4 cut(s)	17, 171, 184, 246
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	230
SspMI	CTAG	3 cut(s)	81, 179, 286
TaaI	ACNGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	246
XhoI	CTCGAG	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	3 cut(s)	81, 179, 286
ZrmI	AGTACT	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.