Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003616

Physical Location & Seq

Genomic Coordinates Reverse (-)

6536748 .. 6537950

Gene Structure 1203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016420

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAAATCCAATACAACATTCAAAGATGTCAAGGGTGTAGATGAGGCTAAAGCTGAGCTCGAGGAAATTGTTCACTATCTTCGAAATCCCGAGCAATTCACCCGCTCAGGAGGTAGACTTCCGAAAGGTGTTTCACCCGCTCAGAAGCCGACGTTCCATTCTTTGCATGTAGTGGTAGCGAGTTTGATGAGATTGATGTTTGTGGGCGTGGGGGCTGCGAGAGTGAGGAAGCTTTTTAATGCTGCAAAAGAGAAATCTCCCAGCATTATATTTATTGACGAAATAGATGCTGTTGGGGGACAACGAAGATCCGATGGCTATAGGGATACAGTGAACCAGTTGCTAGTCGAACTAGATGACTTCAAACAAAATGATGGAGTAATTGTGATAGATGTTAAAGGATGGAGGGAGATATTGGAATCATACATGTCGAAAGTAGTTGCGGCAGATGGTGTAAACCTGGGCGTTATTGCTAGAGGAACTACGGGGGTTTCAACTGCTGATCTTGCAAACTTGGTCAACATTGCAGCCGTGAAAGCAGCAGTTGATGGTTCTAAACAAGTGAGCATGTCTGCTGACCTTGAACATGCCAAGGATAGGATCATGATGGGAACCGAGCGAAAATCTGCAGTTAAATCTGAAGAATTACGAAAGCTCACAGCTTTTCACGAGAGTGGCCATGCACTTGTAGCCATTCATGCCGATGGGGCACTTCCGATTCACAAGGCTACGATTGTATCACGAGGAATGTCTTTCGGCATGGTTGATCAACTGACTGAAAAGGATGATGAGATGAGAAGAACGCGGAAGCAGATGCTTGCTGAGCTTGATGTTTGTATGGGAGGTCGTGCTGCAGAGGAGCTAGTATTTGGAGAAAATGAAGTTACTTCCGGCGCATCATCTGATATTCAGAAGGCAACTTCTTTGGCAACAAATATGGTCACAAAGTATGGAATGAGCTTGAAGATTGTGCTTGTTTTCCACAACTACGAAGAAAGTTTCAGAAGTACGTTGAGTGCCGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

343

Amino Acids

37.3

Weight (kDa)

6.53

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	55 - 130	1.5e-16	ATPase family associated with various cellular activities (AAA)
Peptidase_M41	PF01434	211 - 333	2.1e-41	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26140
fragaria_vesca	FvH4_1g07720 FvH4_2g31730 FvH4_2g31730
malus_domestica	MD08G1063300.v1.1 MD15G1058100.v1.1 MD15G1058500.v1.1
prunus_persica	Prupe.1G410800_v2.0.a1
pyrus_communis	pycom08g05200 pycom15g05470 pycom15g05500
rosa_chinensis	RchiOBHm_Chr2g0093601 RchiOBHm_Chr6g0311091
rosa_laevigata	RLG00000010436 RLG00000016420
rosa_multiflora	Rmu_co8327861.1_g000001 Rmu_co8491229.1_g000001 Rmu_sc0002126.1_g000022 Rmu_sc0008967.1_g000002 Rmu_sc0012235.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147960 Rroxscaffold_7G00158030
rosa_rugosa	Rorug02G0037800 Rorug02G0037800 Rorug06G0385300 Rorug06G0385400
rosa_samantha	Rh2AG084300 Rh2BG084900 Rh2CG087200 Rh2DG082900 Rh6AG499400 Rh6BG509900 Rh6CG515700 Rh6DG502300
rosa_wichuraiana	Rw6G043500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	105, 140
AccI	GTMKAC	1 cut(s)	115
AccII	CGCG	1 cut(s)	805
AciI	CCGC	4 cut(s)	103, 138, 443, 805
AclWI	GGATC	2 cut(s)	303, 608
AcoI	YGGCCR	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	1 cut(s)	1009
AfiI	CCNNNNNNNGG	1 cut(s)	597
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	5 cut(s)	22, 364, 495, 584, 964
AjnI	CCWGG	1 cut(s)	459
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AleI	CACNNNNGTG	1 cut(s)	672
AluBI	AGCT	8 cut(s)	53, 58, 232, 655, 662, 826, 862, 960
AluI	AGCT	8 cut(s)	53, 58, 232, 655, 662, 826, 862, 960
Alw21I	GWGCWC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	303, 608
Ama87I	CYCGRG	2 cut(s)	59, 89
AoxI	GGCC	1 cut(s)	676
ApeKI	GCWGC	5 cut(s)	215, 242, 527, 539, 851
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	896
AsuHPI	GGTGA	2 cut(s)	91, 126
AsuII	TTCGAA	1 cut(s)	82
AvaI	CYCGRG	2 cut(s)	59, 89
BaeGI	GKGCMC	1 cut(s)	712
BaeI	ACNNNNGTAYC	2 cut(s)	720, 753
BalI	TGGCCA	1 cut(s)	678
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	2 cut(s)	668, 741
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	5 cut(s)	202, 229, 539, 551, 838
BccI	CCATC	7 cut(s)	308, 368, 396, 443, 542, 601, 698
BceAI	ACGGC	1 cut(s)	515
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	1 cut(s)	461
BciVI	GTATCC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	766
BfaI	CTAG	4 cut(s)	344, 353, 474, 863
BfmI	CTRYAG	3 cut(s)	319, 627, 852
BfuI	GTATCC	1 cut(s)	319
BglI	GCCNNNNNGGC	1 cut(s)	707
BisI	GCNGC	6 cut(s)	216, 243, 444, 528, 540, 852
BlpI	GCTNAGC	2 cut(s)	54, 822
BlsI	GCNGC	6 cut(s)	217, 244, 445, 529, 541, 853
Bme1390I	CCNGG	1 cut(s)	461
BmeT110I	CYCGRG	2 cut(s)	59, 89
BmiI	GGNNCC	1 cut(s)	613
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	3 cut(s)	277, 804, 905
Bpu10I	CCTNAGC	1 cut(s)	106
Bpu1102I	GCTNAGC	2 cut(s)	54, 822
Bpu14I	TTCGAA	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	460, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	597
Bse1I	ACTGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	2 cut(s)	460, 591
BseGI	GGATG	2 cut(s)	407, 790
BseLI	CCNNNNNNNGG	1 cut(s)	597
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	4 cut(s)	45, 120, 155, 813
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	872
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	5 cut(s)	202, 229, 539, 551, 838
BseYI	CCCAGC	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	805
BshFI	GGCC	1 cut(s)	678
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	2 cut(s)	59, 89
BsiSI	CCGG	1 cut(s)	891
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	597
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	678
BsoBI	CYCGRG	2 cut(s)	59, 89
Bsp119I	TTCGAA	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	60, 712
Bsp143I	GATC	4 cut(s)	308, 502, 600, 766
Bsp1720I	GCTNAGC	2 cut(s)	54, 822
BspACI	CCGC	4 cut(s)	103, 138, 443, 805
BspANI	GGCC	1 cut(s)	678
BspCNI	CTCAG	4 cut(s)	46, 119, 154, 814
BspFNI	CGCG	1 cut(s)	805
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	1 cut(s)	613
BspMAI	CTGCAG	2 cut(s)	631, 856
BspPI	GGATC	2 cut(s)	303, 608
BspT104I	TTCGAA	1 cut(s)	82
BsrBI	CCGCTC	2 cut(s)	105, 140
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	460, 591
BssMI	GATC	4 cut(s)	308, 502, 600, 766
BssSI	CACGAG	2 cut(s)	668, 741
BssT1I	CCWWGG	1 cut(s)	591
Bst2BI	CACGAG	2 cut(s)	668, 741
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	1 cut(s)	331
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	819
BstDEI	CTNAG	4 cut(s)	54, 106, 141, 822
BstF5I	GGATG	2 cut(s)	407, 790
BstFNI	CGCG	1 cut(s)	805
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	4 cut(s)	311, 505, 603, 769
BstMBI	GATC	4 cut(s)	308, 502, 600, 766
BstMWI	GCNNNNNNNGC	6 cut(s)	506, 536, 689, 698, 707, 823
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	4 cut(s)	170, 430, 571, 590
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	3 cut(s)	319, 627, 852
BstSLI	GKGCMC	1 cut(s)	712
BstUI	CGCG	1 cut(s)	805
BstV1I	GCAGC	5 cut(s)	202, 229, 539, 551, 838
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	678
BtsCI	GGATG	2 cut(s)	407, 790
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	819
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	1 cut(s)	896
Csp6I	GTAC	1 cut(s)	1008
CviAII	CATG	9 cut(s)	167, 427, 568, 587, 604, 680, 698, 760, 1026
CviQI	GTAC	1 cut(s)	1008
DdeI	CTNAG	4 cut(s)	54, 106, 141, 822
DpnI	GATC	4 cut(s)	310, 504, 602, 768
DpnII	GATC	4 cut(s)	308, 502, 600, 766
EaeI	YGGCCR	1 cut(s)	676
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	660
Eco88I	CYCGRG	2 cut(s)	59, 89
EcoICRI	GAGCTC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	9 cut(s)	170, 430, 571, 590, 607, 683, 701, 763, 1029
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	9 cut(s)	166, 426, 567, 586, 603, 679, 697, 759, 1025
FauI	CCCGC	2 cut(s)	110, 145
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	6 cut(s)	216, 243, 444, 528, 540, 852
FokI	GGATG	2 cut(s)	414, 797
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	6 cut(s)	216, 243, 444, 528, 540, 852
FspBI	CTAG	4 cut(s)	344, 353, 474, 863
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	6 cut(s)	216, 243, 444, 528, 540, 852
GsaI	CCCAGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	1 cut(s)	891
HhaI	GCGC	1 cut(s)	896
Hin1II	CATG	9 cut(s)	170, 430, 571, 590, 607, 683, 701, 763, 1029
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	419, 718
HpaII	CCGG	1 cut(s)	891
HphI	GGTGA	2 cut(s)	91, 126
Hpy166II	GTNNAC	5 cut(s)	73, 116, 334, 457, 520
Hpy188I	TCNGA	8 cut(s)	123, 144, 313, 640, 717, 904, 912, 1004
Hpy188III	TCNNGA	5 cut(s)	89, 108, 604, 668, 741
Hpy8I	GTNNAC	5 cut(s)	73, 116, 334, 457, 520
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	907
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	2 cut(s)	152, 1010
HpyCH4V	TGCA	7 cut(s)	166, 245, 509, 527, 629, 683, 854
HpyF10VI	GCNNNNNNNGC	6 cut(s)	506, 536, 689, 698, 707, 823
HpyF3I	CTNAG	4 cut(s)	54, 106, 141, 822
HpySE526I	ACGT	2 cut(s)	152, 1010
Hsp92II	CATG	9 cut(s)	170, 430, 571, 590, 607, 683, 701, 763, 1029
HspAI	GCGC	1 cut(s)	894
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	4 cut(s)	308, 502, 600, 766
LmnI	GCTCC	1 cut(s)	859
LpnPI	CCDG	6 cut(s)	93, 274, 350, 446, 473, 904
Lsp1109I	GCAGC	5 cut(s)	202, 229, 539, 551, 838
LweI	GCATC	3 cut(s)	277, 804, 905
MaeI	CTAG	4 cut(s)	344, 353, 474, 863
MaeII	ACGT	2 cut(s)	152, 1010
MaeIII	GTNAC	2 cut(s)	883, 940
MalI	GATC	4 cut(s)	310, 504, 602, 768
MbiI	CCGCTC	2 cut(s)	105, 140
MboI	GATC	4 cut(s)	308, 502, 600, 766
MboII	GAAGA	6 cut(s)	71, 318, 653, 810, 976, 1004
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	2 cut(s)	60, 712
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	4 cut(s)	66, 95, 381, 644
MluNI	TGGCCA	1 cut(s)	678
MnlI	CCTC	9 cut(s)	37, 55, 104, 219, 399, 470, 737, 836, 850
Mox20I	TGGCCA	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	69
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	3 cut(s)	237, 396, 633
MslI	CAYNNNNRTG	2 cut(s)	672, 702
Msp20I	TGGCCA	1 cut(s)	678
MspI	CCGG	1 cut(s)	891
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	805
MwoI	GCNNNNNNNGC	6 cut(s)	506, 536, 689, 698, 707, 823
NdeII	GATC	4 cut(s)	308, 502, 600, 766
NlaIII	CATG	9 cut(s)	170, 430, 571, 590, 607, 683, 701, 763, 1029
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	940
NspI	RCATGY	4 cut(s)	170, 430, 571, 590
NspV	TTCGAA	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	672
PaeR7I	CTCGAG	1 cut(s)	59
PagI	TCATGA	1 cut(s)	603
PciI	ACATGT	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	419, 718
PkrI	GCNGC	6 cut(s)	217, 244, 445, 529, 541, 853
PscI	ACATGT	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	459
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	613
PspXI	VCTCGAGB	1 cut(s)	59
PstI	CTGCAG	2 cut(s)	631, 856
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	1 cut(s)	1009
RsaNI	GTAC	1 cut(s)	1008
RseI	CAYNNNNRTG	2 cut(s)	672, 702
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	237, 396, 633
SatI	GCNGC	6 cut(s)	216, 243, 444, 528, 540, 852
Sau3AI	GATC	4 cut(s)	308, 502, 600, 766
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	2 cut(s)	60, 712
SfaNI	GCATC	3 cut(s)	277, 804, 905
SfcI	CTRYAG	3 cut(s)	319, 627, 852
Sfr274I	CTCGAG	1 cut(s)	59
SfuI	TTCGAA	1 cut(s)	82
SlaI	CTCGAG	1 cut(s)	59
SmiMI	CAYNNNNRTG	2 cut(s)	672, 702
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	4 cut(s)	66, 95, 381, 644
SsiI	CCGC	4 cut(s)	103, 138, 443, 805
SspMI	CTAG	4 cut(s)	344, 353, 474, 863
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	459
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	2 cut(s)	155, 1013
TaqI	TCGA	4 cut(s)	60, 82, 348, 431
TasI	AATT	4 cut(s)	66, 95, 381, 644
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	2 cut(s)	419, 718
Tru1I	TTAA	3 cut(s)	237, 396, 633
Tru9I	TTAA	3 cut(s)	237, 396, 633
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	940
TseI	GCWGC	5 cut(s)	215, 242, 527, 539, 851
Tsp45I	GTSAC	1 cut(s)	940
TspDTI	ATGAA	3 cut(s)	17, 686, 894
TspRI	CASTG	1 cut(s)	336
XceI	RCATGY	4 cut(s)	170, 430, 571, 590
XhoI	CTCGAG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	4 cut(s)	344, 353, 474, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.