Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003616

Physical Location & Seq

Genomic Coordinates Forward (+)

85636803 .. 85637606

Gene Structure 804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTCGAAAGTAGTTGCGGCAGATGGTGTAAACCTGGGCGTTGTTGCTAGAGGAACTACGGGGTTTTCAGCTGCTGATCTTGCAAACTTGGTCAACATTGCAGCCGTGAAAGCAGCAGTTGATGGTTCTAAACAAGTGAGCATGGCTGATCTTGAACAAGCCAAGGATAGGATCATGATGGGAACCGAGCGAAAATCTGCAGTTAAATCTGAAGAATTACGAAAGCTCACAGCTTTACACGAGAGTGGCCATGCACTTGTAGCCATTCATGCCGATGGAGCACTTCCGATTCACAAGGCTACGATTGTATCACGAGGAACGTCTCTCGGCATGGTTACTCAACTGACTGAAAAGGATGATGAGAAGAGAAGAACGCGGAAGCAGATGCTTGCTGAGCTTGATGTTTATATGGGAGGTCGTGCTGCAGAGGAGCTAATATTTGGAGAAAATGACGTTACTTCCGGCGCATCATCTGATATTCAGGAGGCAACTTCTTTGGCAACAAATATGGTCACAAAGTATGGAATGAGCTTGAAGATTCTGTTTGAAAAGGCTTACAAGAATGCAAAAAACATATTGACAACTCATCTTGAAGAGCTTCATGCACTAGCTAATGCATTACTCGGGCACGAGAATCTTTCTGGGAGTCAGATTAAGGAATTACTTGTTCTGGTGAACTCTCTTCCGTCTTCCCAAAACACCCATGAATCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

238

Amino Acids

25.41

Weight (kDa)

6.25

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_3	PF17862	10 - 53	1e-09	AAA+ lid domain
Peptidase_M41	PF01434	68 - 180	2.8e-39	Peptidase family M41
Peptidase_M41	PF01434	179 - 221	9.5e-06	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26140
fragaria_vesca	FvH4_1g07720 FvH4_2g31730 FvH4_2g31730
malus_domestica	MD08G1063300.v1.1 MD15G1058100.v1.1 MD15G1058500.v1.1
prunus_persica	Prupe.1G410800_v2.0.a1
pyrus_communis	pycom08g05200 pycom15g05470 pycom15g05500
rosa_chinensis	RchiOBHm_Chr2g0093601 RchiOBHm_Chr6g0311091
rosa_laevigata	RLG00000010436 RLG00000016420
rosa_multiflora	Rmu_co8327861.1_g000001 Rmu_co8491229.1_g000001 Rmu_sc0002126.1_g000022 Rmu_sc0008967.1_g000002 Rmu_sc0012235.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147960 Rroxscaffold_7G00158030
rosa_rugosa	Rorug02G0037800 Rorug02G0037800 Rorug06G0385300 Rorug06G0385400
rosa_samantha	Rh2AG084300 Rh2BG084900 Rh2CG087200 Rh2DG082900 Rh6AG499400 Rh6BG509900 Rh6CG515700 Rh6DG502300
rosa_wichuraiana	Rw6G043500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	376
AciI	CCGC	2 cut(s)	17, 376
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	4 cut(s)	155, 535, 548, 593
AjnI	CCWGG	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	8 cut(s)	71, 226, 233, 397, 433, 531, 598, 611
AluI	AGCT	8 cut(s)	71, 226, 233, 397, 433, 531, 598, 611
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	4 cut(s)	71, 101, 113, 422
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	685
AvaI	CYCGRG	1 cut(s)	623
BaeGI	GKGCMC	1 cut(s)	630
BaeI	ACNNNNGTAYC	2 cut(s)	291, 324
BalI	TGGCCA	1 cut(s)	249
BauI	CACGAG	3 cut(s)	239, 312, 629
BbsI	GAAGAC	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	4 cut(s)	58, 113, 125, 409
BccI	CCATC	4 cut(s)	17, 116, 172, 269
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	3 cut(s)	48, 608, 715
BfmI	CTRYAG	2 cut(s)	198, 423
BisI	GCNGC	5 cut(s)	18, 72, 102, 114, 423
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	5 cut(s)	19, 73, 103, 115, 424
Bme1390I	CCNGG	1 cut(s)	35
BmeT110I	CYCGRG	1 cut(s)	623
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	2 cut(s)	375, 476
BpiI	GAAGAC	1 cut(s)	681
Bpu1102I	GCTNAGC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	34, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	34, 162
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	443
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	4 cut(s)	58, 113, 125, 409
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	283
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	327
BsmBI	CGTCTC	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	623
Bsp1286I	GDGCHC	2 cut(s)	283, 630
Bsp143I	GATC	3 cut(s)	76, 148, 171
Bsp1720I	GCTNAGC	1 cut(s)	393
BspACI	CCGC	2 cut(s)	17, 376
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	2 cut(s)	202, 427
BspPI	GGATC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	588
BsrDI	GCAATG	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	34, 162
BssMI	GATC	3 cut(s)	76, 148, 171
BssSI	CACGAG	3 cut(s)	239, 312, 629
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	3 cut(s)	239, 312, 629
Bst2UI	CCWGG	1 cut(s)	35
Bst6I	CTCTTC	3 cut(s)	359, 588, 687
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	3 cut(s)	79, 151, 174
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	3 cut(s)	76, 148, 171
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 110, 260, 269, 278, 394
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	2 cut(s)	198, 423
BstSLI	GKGCMC	1 cut(s)	630
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	4 cut(s)	58, 113, 125, 409
BstV2I	GAAGAC	1 cut(s)	681
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	390
CaiI	CAGNNNCTG	1 cut(s)	74
CciI	TCATGA	1 cut(s)	174
CfoI	GCGC	1 cut(s)	467
CviAII	CATG	7 cut(s)	142, 175, 251, 269, 331, 602, 704
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	3 cut(s)	78, 150, 173
DpnII	GATC	3 cut(s)	76, 148, 171
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	3 cut(s)	359, 588, 687
EarI	CTCTTC	3 cut(s)	359, 588, 687
Eco130I	CCWWGG	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	327
FaeI	CATG	7 cut(s)	145, 178, 254, 272, 334, 605, 707
FatI	CATG	7 cut(s)	141, 174, 250, 268, 330, 601, 703
Fnu4HI	GCNGC	5 cut(s)	18, 72, 102, 114, 423
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	5 cut(s)	18, 72, 102, 114, 423
FspBI	CTAG	3 cut(s)	48, 608, 715
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	5 cut(s)	18, 72, 102, 114, 423
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	1 cut(s)	462
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	7 cut(s)	145, 178, 254, 272, 334, 605, 707
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	5 cut(s)	289, 538, 634, 646, 707
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	1 cut(s)	685
Hpy166II	GTNNAC	3 cut(s)	31, 94, 676
Hpy188I	TCNGA	4 cut(s)	211, 288, 475, 651
Hpy188III	TCNNGA	5 cut(s)	152, 175, 312, 482, 590
Hpy8I	GTNNAC	3 cut(s)	31, 94, 676
HpyCH4IV	ACGT	2 cut(s)	320, 453
HpyCH4V	TGCA	8 cut(s)	83, 101, 200, 254, 425, 566, 605, 617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 110, 260, 269, 278, 394
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	2 cut(s)	320, 453
Hsp92II	CATG	7 cut(s)	145, 178, 254, 272, 334, 605, 707
HspAI	GCGC	1 cut(s)	465
Kzo9I	GATC	3 cut(s)	76, 148, 171
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	2 cut(s)	278, 430
LpnPI	CCDG	6 cut(s)	20, 47, 467, 475, 627, 656
Lsp1109I	GCAGC	4 cut(s)	58, 113, 125, 409
LweI	GCATC	2 cut(s)	375, 476
MaeI	CTAG	3 cut(s)	48, 608, 715
MaeII	ACGT	2 cut(s)	320, 453
MaeIII	GTNAC	3 cut(s)	334, 454, 511
MalI	GATC	3 cut(s)	78, 150, 173
MboI	GATC	3 cut(s)	76, 148, 171
MboII	GAAGA	7 cut(s)	224, 376, 381, 547, 605, 674, 681
MhlI	GDGCHC	2 cut(s)	283, 630
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	2 cut(s)	215, 659
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	655
MnlI	CCTC	5 cut(s)	44, 308, 407, 421, 478
Mox20I	TGGCCA	1 cut(s)	249
Mph1103I	ATGCAT	1 cut(s)	619
MroXI	GAANNNNTTC	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	2 cut(s)	204, 654
MslI	CAYNNNNRTG	2 cut(s)	243, 273
Msp20I	TGGCCA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	6 cut(s)	80, 110, 260, 269, 278, 394
NdeII	GATC	3 cut(s)	76, 148, 171
NlaIII	CATG	7 cut(s)	145, 178, 254, 272, 334, 605, 707
NlaIV	GGNNCC	1 cut(s)	184
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	511
NsiI	ATGCAT	1 cut(s)	619
OliI	CACNNNNGTG	1 cut(s)	243
PagI	TCATGA	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	588
PctI	GAATGC	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	4 cut(s)	289, 538, 634, 707
PkrI	GCNGC	5 cut(s)	19, 73, 103, 115, 424
PleI	GAGTC	1 cut(s)	654
PpsI	GAGTC	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	184
PstI	CTGCAG	2 cut(s)	202, 427
PstNI	CAGNNNCTG	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	71
RseI	CAYNNNNRTG	2 cut(s)	243, 273
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	2 cut(s)	204, 654
SatI	GCNGC	5 cut(s)	18, 72, 102, 114, 423
Sau3AI	GATC	3 cut(s)	76, 148, 171
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	2 cut(s)	283, 630
SfaNI	GCATC	2 cut(s)	375, 476
SfcI	CTRYAG	2 cut(s)	198, 423
SmiMI	CAYNNNNRTG	2 cut(s)	243, 273
Sse9I	AATT	2 cut(s)	215, 659
SsiI	CCGC	2 cut(s)	17, 376
SspI	AATATT	1 cut(s)	438
SspMI	CTAG	3 cut(s)	48, 608, 715
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	162
TaiI	ACGT	2 cut(s)	323, 456
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	215, 659
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	4 cut(s)	289, 538, 634, 707
Tru1I	TTAA	2 cut(s)	204, 654
Tru9I	TTAA	2 cut(s)	204, 654
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	4 cut(s)	71, 101, 113, 422
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	2 cut(s)	257, 590
TspGWI	ACGGA	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	3 cut(s)	48, 608, 715
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.