Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003616

Physical Location & Seq

Genomic Coordinates Reverse (-)

6858397 .. 6858885

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46865

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTTGTGGGCGTTGGAGCTGCGAGAGTGAGGAAGCTTTTTAATGCTGCAAAAGAGAAATCTCCCAGCATTATATTTATTGACGAAATAGATGCTGTTGGGGGACAACGAAGATCCGATGGCTATAGGGATACAGTGAACCAGTTGCTAGTCAAACTAGATGGCTTCAAACAAAATGATGGAGTAATTGTGATAGGTGCGACTAACTTTCCGGAATTATTGGATAAAGCTCTAGTGAGAGCTGGACGATTTGACCGTCAAGTTTTTATCCATATGCCAGATGTTAAAGGACGGAGGGAGATATTGGAATCATACATGTCGAAAGTAGTTGCGGCAGATGGTGTAAACCTGGGCGTTATTGCTAGAGGAACTACGGGGTTTTCAGCTGCTGATCTTGCAAACTTGGTCAACATTGCAGCCGTGAAAGTAGCAGTTGATGGTTCTAAACAAGTGAGCATGGCTGATCTTCATCGAACATGCCAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

162

Amino Acids

17.45

Weight (kDa)

9.37

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	2 - 91	1.5e-26	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	115 - 156	1.4e-08	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26140
fragaria_vesca	FvH4_1g07720 FvH4_2g31730 FvH4_2g31730
malus_domestica	MD08G1063300.v1.1 MD15G1058100.v1.1 MD15G1058500.v1.1
prunus_persica	Prupe.1G410800_v2.0.a1
pyrus_communis	pycom08g05200 pycom15g05470 pycom15g05500
rosa_chinensis	RchiOBHm_Chr2g0093601 RchiOBHm_Chr6g0311091
rosa_laevigata	RLG00000010436 RLG00000016420
rosa_multiflora	Rmu_co8327861.1_g000001 Rmu_co8491229.1_g000001 Rmu_sc0002126.1_g000022 Rmu_sc0008967.1_g000002 Rmu_sc0012235.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147960 Rroxscaffold_7G00158030
rosa_rugosa	Rorug02G0037800 Rorug02G0037800 Rorug06G0385300 Rorug06G0385400
rosa_samantha	Rh2AG084300 Rh2BG084900 Rh2CG087200 Rh2DG082900 Rh6AG499400 Rh6BG509900 Rh6CG515700 Rh6DG502300
rosa_wichuraiana	Rw6G043500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	5 cut(s)	20, 37, 230, 242, 386
AluI	AGCT	5 cut(s)	20, 37, 230, 242, 386
AlwI	GGATC	1 cut(s)	108
AlwNI	CAGNNNCTG	1 cut(s)	389
Aor13HI	TCCGGA	1 cut(s)	211
ApeKI	GCWGC	4 cut(s)	20, 47, 386, 416
BbvI	GCAGC	4 cut(s)	7, 34, 373, 428
BccI	CCATC	5 cut(s)	113, 155, 173, 332, 431
BceAI	ACGGC	1 cut(s)	404
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	1 cut(s)	350
BciVI	GTATCC	1 cut(s)	124
BfaI	CTAG	4 cut(s)	149, 158, 233, 363
BfmI	CTRYAG	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	5 cut(s)	21, 48, 333, 387, 417
BlsI	GCNGC	5 cut(s)	22, 49, 334, 388, 418
Bme1390I	CCNGG	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	349, 481
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	468
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	349, 481
BseJI	GATNNNNATC	1 cut(s)	468
BseMI	GCAATG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	142
BseXI	GCAGC	4 cut(s)	7, 34, 373, 428
BseYI	CCCAGC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	3 cut(s)	113, 391, 463
BspACI	CCGC	1 cut(s)	332
BspEI	TCCGGA	1 cut(s)	211
BspPI	GGATC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	349, 481
BssMI	GATC	3 cut(s)	113, 391, 463
BssT1I	CCWWGG	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	136, 257
BstKTI	GATC	3 cut(s)	116, 394, 466
BstMBI	GATC	3 cut(s)	113, 391, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	2 cut(s)	319, 480
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	124
BstV1I	GCAGC	4 cut(s)	7, 34, 373, 428
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	389
CviAII	CATG	3 cut(s)	316, 457, 477
CviJI	RGCY	9 cut(s)	20, 37, 123, 165, 230, 242, 386, 419, 461
CviKI_1	RGCY	9 cut(s)	20, 37, 123, 165, 230, 242, 386, 419, 461
DpnI	GATC	3 cut(s)	115, 393, 465
DpnII	GATC	3 cut(s)	113, 391, 463
Eco130I	CCWWGG	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	3 cut(s)	319, 460, 480
FaiI	YATR	8 cut(s)	74, 126, 273, 275, 313, 317, 458, 478
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	3 cut(s)	315, 456, 476
FauNDI	CATATG	1 cut(s)	273
Fnu4HI	GCNGC	5 cut(s)	21, 48, 333, 387, 417
Fsp4HI	GCNGC	5 cut(s)	21, 48, 333, 387, 417
FspBI	CTAG	4 cut(s)	149, 158, 233, 363
GluI	GCNGC	5 cut(s)	21, 48, 333, 387, 417
GsaI	CCCAGC	1 cut(s)	69
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	3 cut(s)	319, 460, 480
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	1 cut(s)	212
Hpy166II	GTNNAC	3 cut(s)	139, 346, 409
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	3 cut(s)	139, 346, 409
HpyCH4III	ACNGT	2 cut(s)	136, 257
HpyCH4V	TGCA	3 cut(s)	50, 398, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
Hsp92II	CATG	3 cut(s)	319, 460, 480
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	113, 391, 463
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	7 cut(s)	79, 155, 225, 228, 291, 335, 362
Lsp1109I	GCAGC	4 cut(s)	7, 34, 373, 428
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	4 cut(s)	149, 158, 233, 363
MalI	GATC	3 cut(s)	115, 393, 465
MboI	GATC	3 cut(s)	113, 391, 463
MboII	GAAGA	2 cut(s)	123, 458
MflI	RGATCY	1 cut(s)	113
MluCI	AATT	2 cut(s)	186, 215
MnlI	CCTC	3 cut(s)	24, 288, 359
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	2 cut(s)	42, 285
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	395
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	3 cut(s)	113, 391, 463
NlaIII	CATG	3 cut(s)	319, 460, 480
NspI	RCATGY	2 cut(s)	319, 480
PciI	ACATGT	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	5 cut(s)	22, 49, 334, 388, 418
PscI	ACATGT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	386
SaqAI	TTAA	2 cut(s)	42, 285
SatI	GCNGC	5 cut(s)	21, 48, 333, 387, 417
Sau3AI	GATC	3 cut(s)	113, 391, 463
ScrFI	CCNGG	1 cut(s)	350
SetI	ASST	7 cut(s)	22, 39, 199, 232, 244, 351, 388
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	186, 215
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	4 cut(s)	149, 158, 233, 363
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	2 cut(s)	136, 257
TaqI	TCGA	2 cut(s)	320, 472
TasI	AATT	2 cut(s)	186, 215
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	42, 285
Tru9I	TTAA	2 cut(s)	42, 285
TscAI	CASTG	1 cut(s)	141
TseI	GCWGC	4 cut(s)	20, 47, 386, 416
TspDTI	ATGAA	1 cut(s)	458
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	141
XceI	RCATGY	2 cut(s)	319, 480
XspI	CTAG	4 cut(s)	149, 158, 233, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.