Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003616

Physical Location & Seq

Genomic Coordinates Reverse (-)

53074748 .. 53075773

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0385400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGCATGTTCCGGGGTGCATGGAGGTTGAATGGAAGATACACCGCTCAGGACCATGGAGATCGCTTTCTGTTCACCTTGACGGATCCAACAGATCCTAACCGGATCCTTCGAGGTGGTCCTTGGGGTTTTGATAGAGCTCTAATTGTCCTAGCACCGTATGATGGGGTGGGAGCGATCAAGGATGTTCCGCTCTCTACCTTAGCTTACTGGATCAAGAAAGACACAACAGAGTTTGGAGAAGGAAGGATTCGAATCCGAGTTGAGATGGATCTTCTGCAGCCTGTGATTTTCCGACCGAGCTTCATGGTGGATGATGGGGTTGATGTGGATCTGGACTTTTTCTTTGAAAATCTCTATGGCAGATGTCAGGAGTGTGGTTTGATTACTCATGTGGGCTTACCATGTGCTGGGACACCGCTGCCAGCAGAGGCTAGGGCTGAACAATCGCCGGCACGGCGAAATCTTGAAAGGGTGTTGAACCGTGTGGAGTTGTCTCCTCATATTGGACCGCCGATGGTGTTTGGAGCACAGCTGAGTCCACAGGTCGGGCTGGAGAGATTCCTGCTAGCAGCTAAACCAAAGGGGAGGAAGGAAATTAGGTGTAAGCTTGCTACCAGCGGTGGTGAAGGAAGTTCTGGAGTGCACACTGCACCTCTGAACGAGAAGGTGGAGAATGGTAATGAAATATCTCCGGGAGGTTCAGGGCAGGAGCTGATTGGGAGTGGTAGTTCTACTGAGAAGGAGTTGATGGAGGCAGCTCCTAGTTGTGGTATGCGTAGGAAACGTGTGGATGAAGATGCACGACATCTCTCCAAAGAAGCTGCGGTTGAGTCTATCAGTGGGCAGGACAAACTTGGATGCTATGACAATGGGATTGTGTTATGTGAAAGCTATGAAGGAAGTATACAAGAAGAGGCCAGGAAGGCCAAAGGGGGCAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009888 GO:0009941 GO:0010073 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

315

Amino Acids

34.43

Weight (kDa)

5.72

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26140
fragaria_vesca	FvH4_1g07720 FvH4_2g31730 FvH4_2g31730
malus_domestica	MD08G1063300.v1.1 MD15G1058100.v1.1 MD15G1058500.v1.1
prunus_persica	Prupe.1G410800_v2.0.a1
pyrus_communis	pycom08g05200 pycom15g05470 pycom15g05500
rosa_chinensis	RchiOBHm_Chr2g0093601 RchiOBHm_Chr6g0311091
rosa_laevigata	RLG00000010436 RLG00000016420
rosa_multiflora	Rmu_co8327861.1_g000001 Rmu_co8491229.1_g000001 Rmu_sc0002126.1_g000022 Rmu_sc0008967.1_g000002 Rmu_sc0012235.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147960 Rroxscaffold_7G00158030
rosa_rugosa	Rorug02G0037800 Rorug02G0037800 Rorug06G0385300 Rorug06G0385400
rosa_samantha	Rh2AG084300 Rh2BG084900 Rh2CG087200 Rh2DG082900 Rh6AG499400 Rh6BG509900 Rh6CG515700 Rh6DG502300
rosa_wichuraiana	Rw6G043500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccBSI	CCGCTC	2 cut(s)	47, 193
AccI	GTMKAC	1 cut(s)	907
AciI	CCGC	6 cut(s)	45, 191, 419, 512, 621, 827
AclWI	GGATC	8 cut(s)	80, 89, 93, 100, 113, 221, 279, 339
AfiI	CCNNNNNNNGG	5 cut(s)	164, 410, 506, 548, 770
AflIII	ACRYGT	1 cut(s)	787
AgsI	TTSAA	4 cut(s)	31, 350, 470, 481
AjnI	CCWGG	1 cut(s)	920
AloI	GAACNNNNNNTCC	2 cut(s)	715, 747
Alw21I	GWGCWC	3 cut(s)	142, 532, 648
Alw26I	GTCTC	1 cut(s)	501
Alw44I	GTGCAC	1 cut(s)	644
AlwI	GGATC	8 cut(s)	80, 89, 93, 100, 113, 221, 279, 339
AlwNI	CAGNNNCTG	1 cut(s)	715
AoxI	GGCC	2 cut(s)	918, 927
ApaLI	GTGCAC	1 cut(s)	644
ApeKI	GCWGC	5 cut(s)	280, 421, 572, 758, 824
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspS9I	GGNCC	3 cut(s)	52, 119, 509
AsuC2I	CCSGG	2 cut(s)	14, 696
AsuHPI	GGTGA	2 cut(s)	67, 638
AsuII	TTCGAA	1 cut(s)	253
AsuNHI	GCTAGC	1 cut(s)	568
AvaII	GGWCC	3 cut(s)	52, 119, 509
BaeGI	GKGCMC	1 cut(s)	648
BamHI	GGATCC	2 cut(s)	85, 105
BanII	GRGCYC	1 cut(s)	142
BarI	GAAGNNNNNNTAC	2 cut(s)	891, 923
Bbv12I	GWGCWC	3 cut(s)	142, 532, 648
BbvI	GCAGC	5 cut(s)	292, 408, 584, 770, 811
BccI	CCATC	5 cut(s)	158, 262, 311, 511, 745
BceAI	ACGGC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	922
BcnI	CCSGG	2 cut(s)	14, 696
BcoDI	GTCTC	1 cut(s)	501
BfaI	CTAG	4 cut(s)	152, 435, 569, 765
BfmI	CTRYAG	1 cut(s)	278
BglI	GCCNNNNNGGC	2 cut(s)	457, 926
BisI	GCNGC	5 cut(s)	281, 422, 573, 759, 825
BlsI	GCNGC	5 cut(s)	282, 423, 574, 760, 826
Bme1390I	CCNGG	3 cut(s)	14, 696, 922
Bme18I	GGWCC	3 cut(s)	52, 119, 509
BmgT120I	GGNCC	3 cut(s)	52, 119, 509
BmiI	GGNNCC	2 cut(s)	87, 107
BmrFI	CCNGG	3 cut(s)	14, 696, 922
BmsI	GCATC	2 cut(s)	790, 851
BmtI	GCTAGC	1 cut(s)	572
BpmI	CTGGAG	2 cut(s)	575, 660
Bpu10I	CCTNAGC	2 cut(s)	48, 202
Bpu14I	TTCGAA	1 cut(s)	253
BpuMI	CCSGG	2 cut(s)	14, 696
BsaBI	GATNNNNATC	2 cut(s)	254, 330
BsaJI	CCNNGG	3 cut(s)	13, 55, 122
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	715, 745
Bsc4I	CCNNNNNNNGG	5 cut(s)	164, 410, 506, 548, 770
Bse118I	RCCGGY	1 cut(s)	451
Bse1I	ACTGG	1 cut(s)	215
Bse8I	GATNNNNATC	2 cut(s)	254, 330
BseBI	CCWGG	1 cut(s)	922
BseDI	CCNNGG	3 cut(s)	13, 55, 122
BseGI	GGATG	4 cut(s)	190, 319, 799, 866
BseJI	GATNNNNATC	2 cut(s)	254, 330
BseLI	CCNNNNNNNGG	5 cut(s)	164, 410, 506, 548, 770
BseMII	CTCAG	3 cut(s)	62, 527, 729
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	489
BseSI	GKGCMC	1 cut(s)	648
BseXI	GCAGC	5 cut(s)	292, 408, 584, 770, 811
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	636
Bsh1285I	CGRYCG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	920, 929
BsiEI	CGRYCG	1 cut(s)	299
BsiHKAI	GWGCWC	3 cut(s)	142, 532, 648
BsiSI	CCGG	4 cut(s)	13, 103, 452, 695
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	5 cut(s)	164, 410, 506, 548, 770
BsmAI	GTCTC	1 cut(s)	501
BsmFI	GGGAC	1 cut(s)	427
BsnI	GGCC	2 cut(s)	920, 929
Bsp119I	TTCGAA	1 cut(s)	253
Bsp1286I	GDGCHC	3 cut(s)	142, 532, 648
Bsp143I	GATC	8 cut(s)	61, 85, 94, 105, 177, 213, 271, 331
Bsp19I	CCATGG	1 cut(s)	55
BspACI	CCGC	6 cut(s)	45, 191, 419, 512, 621, 827
BspANI	GGCC	2 cut(s)	920, 929
BspCNI	CTCAG	3 cut(s)	61, 528, 730
BspLI	GGNNCC	2 cut(s)	87, 107
BspMAI	CTGCAG	1 cut(s)	282
BspOI	GCTAGC	1 cut(s)	572
BspPI	GGATC	8 cut(s)	80, 89, 93, 100, 113, 221, 279, 339
BspT104I	TTCGAA	1 cut(s)	253
BsrBI	CCGCTC	2 cut(s)	47, 193
BsrFI	RCCGGY	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	3 cut(s)	13, 55, 122
BssMI	GATC	8 cut(s)	61, 85, 94, 105, 177, 213, 271, 331
BssNAI	GTATAC	1 cut(s)	908
BssT1I	CCWWGG	2 cut(s)	55, 122
Bst1107I	GTATAC	1 cut(s)	908
Bst2UI	CCWGG	1 cut(s)	922
Bst4CI	ACNGT	2 cut(s)	159, 485
Bst6I	CTCTTC	1 cut(s)	909
BstBI	TTCGAA	1 cut(s)	253
BstC8I	GCNNGC	4 cut(s)	426, 453, 570, 612
BstDEI	CTNAG	4 cut(s)	48, 202, 536, 738
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	4 cut(s)	190, 319, 799, 866
BstKTI	GATC	8 cut(s)	64, 88, 97, 108, 180, 216, 274, 334
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	8 cut(s)	61, 85, 94, 105, 177, 213, 271, 331
BstMCI	CGRYCG	1 cut(s)	299
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 926
BstNI	CCWGG	1 cut(s)	922
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	3 cut(s)	12, 694, 920
BstSFI	CTRYAG	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	648
BstV1I	GCAGC	5 cut(s)	292, 408, 584, 770, 811
BstX2I	RGATCY	5 cut(s)	85, 94, 105, 271, 331
BstYI	RGATCY	5 cut(s)	85, 94, 105, 271, 331
BstZ17I	GTATAC	1 cut(s)	908
BsuRI	GGCC	2 cut(s)	920, 929
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	4 cut(s)	190, 319, 799, 866
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	2 cut(s)	648, 847
Cac8I	GCNNGC	4 cut(s)	426, 453, 570, 612
CaiI	CAGNNNCTG	1 cut(s)	715
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	3 cut(s)	52, 119, 509
CviAII	CATG	6 cut(s)	7, 21, 56, 307, 392, 405
DdeI	CTNAG	4 cut(s)	48, 202, 536, 738
DpnI	GATC	8 cut(s)	63, 87, 96, 107, 179, 215, 273, 333
DpnII	GATC	8 cut(s)	61, 85, 94, 105, 177, 213, 271, 331
Eam1104I	CTCTTC	1 cut(s)	909
EarI	CTCTTC	1 cut(s)	909
Ecl136II	GAGCTC	1 cut(s)	140
Eco130I	CCWWGG	2 cut(s)	55, 122
Eco24I	GRGCYC	1 cut(s)	142
Eco47I	GGWCC	3 cut(s)	52, 119, 509
Eco53kI	GAGCTC	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	920
EcoT14I	CCWWGG	2 cut(s)	55, 122
EcoT38I	GRGCYC	1 cut(s)	142
ErhI	CCWWGG	2 cut(s)	55, 122
FaeI	CATG	6 cut(s)	10, 24, 59, 310, 395, 408
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	6 cut(s)	6, 20, 55, 306, 391, 404
FblI	GTMKAC	1 cut(s)	907
Fnu4HI	GCNGC	5 cut(s)	281, 422, 573, 759, 825
FokI	GGATG	4 cut(s)	197, 326, 806, 873
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	5 cut(s)	281, 422, 573, 759, 825
FspBI	CTAG	4 cut(s)	152, 435, 569, 765
GluI	GCNGC	5 cut(s)	281, 422, 573, 759, 825
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	2 cut(s)	575, 660
HaeIII	GGCC	2 cut(s)	920, 929
HapII	CCGG	4 cut(s)	13, 103, 452, 695
Hin1II	CATG	6 cut(s)	10, 24, 59, 310, 395, 408
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	5 cut(s)	250, 255, 538, 561, 833
HpaII	CCGG	4 cut(s)	13, 103, 452, 695
HphI	GGTGA	2 cut(s)	67, 638
Hpy166II	GTNNAC	4 cut(s)	75, 542, 646, 908
Hpy188I	TCNGA	3 cut(s)	260, 296, 660
Hpy188III	TCNNGA	6 cut(s)	50, 217, 335, 371, 467, 639
Hpy8I	GTNNAC	4 cut(s)	75, 542, 646, 908
HpyAV	CCTTC	9 cut(s)	119, 236, 240, 586, 623, 661, 736, 893, 919
HpyCH4III	ACNGT	2 cut(s)	159, 485
HpyCH4IV	ACGT	1 cut(s)	787
HpyCH4V	TGCA	5 cut(s)	20, 280, 646, 653, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 926
HpyF3I	CTNAG	4 cut(s)	48, 202, 536, 738
HpySE526I	ACGT	1 cut(s)	787
Hsp92II	CATG	6 cut(s)	10, 24, 59, 310, 395, 408
KroI	GCCGGC	1 cut(s)	451
KroNI	GCCGGC	1 cut(s)	453
Kzo9I	GATC	8 cut(s)	61, 85, 94, 105, 177, 213, 271, 331
LmnI	GCTCC	4 cut(s)	173, 527, 712, 766
Lsp1109I	GCAGC	5 cut(s)	292, 408, 584, 770, 811
LweI	GCATC	2 cut(s)	790, 851
MaeI	CTAG	4 cut(s)	152, 435, 569, 765
MaeII	ACGT	1 cut(s)	787
MalI	GATC	8 cut(s)	63, 87, 96, 107, 179, 215, 273, 333
MbiI	CCGCTC	2 cut(s)	47, 193
MboI	GATC	8 cut(s)	61, 85, 94, 105, 177, 213, 271, 331
MboII	GAAGA	4 cut(s)	48, 266, 809, 926
MflI	RGATCY	5 cut(s)	85, 94, 105, 271, 331
MhlI	GDGCHC	3 cut(s)	142, 532, 648
MluCI	AATT	2 cut(s)	144, 597
MlyI	GAGTC	2 cut(s)	547, 842
MmeI	TCCRAC	2 cut(s)	113, 319
MnlI	CCTC	9 cut(s)	18, 107, 424, 510, 582, 666, 692, 748, 910
MroNI	GCCGGC	1 cut(s)	451
MspA1I	CMGCKG	3 cut(s)	421, 535, 621
MspI	CCGG	4 cut(s)	13, 103, 452, 695
MspR9I	CCNGG	3 cut(s)	14, 696, 922
MvaI	CCWGG	1 cut(s)	922
MwoI	GCNNNNNNNGC	2 cut(s)	457, 926
NaeI	GCCGGC	1 cut(s)	453
NciI	CCSGG	2 cut(s)	14, 696
NcoI	CCATGG	1 cut(s)	55
NdeII	GATC	8 cut(s)	61, 85, 94, 105, 177, 213, 271, 331
NgoMIV	GCCGGC	1 cut(s)	451
NheI	GCTAGC	1 cut(s)	568
NlaIII	CATG	6 cut(s)	10, 24, 59, 310, 395, 408
NlaIV	GGNNCC	2 cut(s)	87, 107
NspI	RCATGY	1 cut(s)	10
NspV	TTCGAA	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	250, 255, 561
PflMI	CCANNNNNTGG	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	694
PkrI	GCNGC	5 cut(s)	282, 423, 574, 760, 826
PleI	GAGTC	2 cut(s)	546, 841
PpsI	GAGTC	2 cut(s)	546, 841
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	920
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	920
PspN4I	GGNNCC	2 cut(s)	87, 107
PspPI	GGNCC	3 cut(s)	52, 119, 509
PstI	CTGCAG	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	715
PsuI	RGATCY	5 cut(s)	85, 94, 105, 271, 331
PvuII	CAGCTG	1 cut(s)	535
SacI	GAGCTC	1 cut(s)	142
SatI	GCNGC	5 cut(s)	281, 422, 573, 759, 825
Sau3AI	GATC	8 cut(s)	61, 85, 94, 105, 177, 213, 271, 331
Sau96I	GGNCC	3 cut(s)	52, 119, 509
SchI	GAGTC	2 cut(s)	547, 842
ScrFI	CCNGG	3 cut(s)	14, 696, 922
SduI	GDGCHC	3 cut(s)	142, 532, 648
SfaNI	GCATC	2 cut(s)	790, 851
SfcI	CTRYAG	1 cut(s)	278
SfiI	GGCCNNNNNGGCC	1 cut(s)	926
SfuI	TTCGAA	1 cut(s)	253
SinI	GGWCC	3 cut(s)	52, 119, 509
Sse9I	AATT	2 cut(s)	144, 597
SsiI	CCGC	6 cut(s)	45, 191, 419, 512, 621, 827
SspMI	CTAG	4 cut(s)	152, 435, 569, 765
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	3 cut(s)	12, 694, 920
StyI	CCWWGG	2 cut(s)	55, 122
TaaI	ACNGT	2 cut(s)	159, 485
TaiI	ACGT	1 cut(s)	790
TaqI	TCGA	2 cut(s)	112, 253
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	2 cut(s)	144, 597
TfiI	GAWTC	3 cut(s)	250, 255, 561
TscAI	CASTG	2 cut(s)	655, 847
TseI	GCWGC	5 cut(s)	280, 421, 572, 758, 824
TspDTI	ATGAA	4 cut(s)	295, 699, 810, 912
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	655, 847
Van91I	CCANNNNNTGG	1 cut(s)	410
VneI	GTGCAC	1 cut(s)	644
VpaK11BI	GGWCC	3 cut(s)	52, 119, 509
XceI	RCATGY	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	907
XspI	CTAG	4 cut(s)	152, 435, 569, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.